Pregenerated sensors for TDG (Homo sapiens)
Ensembl gene IDs: ENSG00000139372Ensembl transcript IDs: ENST00000266775.13, ENST00000436021.6, ENST00000544060.1, ENST00000544861.5, ENST00000545698.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCCCAGAGACCTGGGCCCGATGGCTGGCAGTACCCAGACAGTGGCTaGACTCAAGCTCCTCCTCCAGGCTTCTACCGTCCCCCACGGACC | + |
|
Preference number: 5 (lower is better) Translates to: PQRPGPDGWQYPDSG*TQAPPPGFYRPPRT Trigger: GGTCCGTGGGGGACGGTAGAAGCCTGGAGGAGGAGCTTGAGTCCAGCCACTGTCTGGGTACTGCCAGCCATCGGGCCCAGGTCTCTGGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000266775.13 ENST00000436021.6 ENST00000544861.5 ENST00000545698.1 |
||
| CDS TCA 90 bp | TCCTTTATGATCCCAGGCCTCGCACCCTCACCAACTGGGCTGCTTTaGGTCTGGAAAGACAGGTCCTGGAACAATCAATCTGAGCCCATG | + |
|
Preference number: 5 (lower is better) Translates to: SFMIPGLAPSPTGLL*VWKDRSWNNQSEPM Trigger: CATGGGCTCAGATTGATTGTTCCAGGACCTGTCTTTCCAGACTCAAAGCAGCCCAGTTGGTGAGGGTGCGAGGCCTGGGATCATAAAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000544060.1 |
||
| CDS TCA 90 bp | CCCATGTTTCTTACTACTACTCTCAGAATTTCACATGTCCCATTTTaGGCACTTCATGAAAATGCAAACTGCCCGCGTTCTCCGCTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: PMFLTTTLRISHVPF*ALHENANCPRSPLP Trigger: TGGAAGCGGAGAACGCGGGCAGTTTGCATTTTCATGAAGTGCTCAAAATGGGACATGTGAAATTCTGAGAGTAGTAGTAAGAAACATGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000266775.13 |
||
| CDS TCA 90 bp | AAATTAGTGCTGCCATGTATCAGGTCTCCACAGGCATCATTCAGTTaGAGTGATTCACATGGATTCTCTCATTTACTTGCAACCCTATCG | + |
|
Preference number: 5 (lower is better) Translates to: KLVLPCIRSPQASFS*SDSHGFSHLLATLS Trigger: CGATAGGGTTGCAAGTAAATGAGAGAATCCATGTGAATCACTTCAACTGAATGATGCCTGTGGAGACCTGATACATGGCAGCACTAATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000544060.1 ENST00000545698.1 |
||
| CDS CCA 72 bp | CCTGGGCCCGATGGCTGGCAGTACCCAGACAGTGGCTaGACTCAAGCTCCTCCTCCAGGCTTCTACCGTCCC | + |
|
Preference number: 6 (lower is better) Translates to: PGPDGWQYPDSG*TQAPPPGFYRP Trigger: GGGACGGTAGAAGCCTGGAGGAGGAGCTTGAGTCCAGCCACTGTCTGGGTACTGCCAGCCATCGGGCCCAGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000266775.13 ENST00000436021.6 ENST00000544861.5 ENST00000545698.1 |
||
| CDS CCA 72 bp | CTCCTTTATGATCCCAGGCCTCGCACCCTCACCAACTaGGCTGCTTTGAGTCTGGAAAGACAGGTCCTGGAA | + |
|
Preference number: 6 (lower is better) Translates to: LLYDPRPRTLTN*AALSLERQVLE Trigger: TTCCAGGACCTGTCTTTCCAGACTCAAAGCAGCCCAGTTGGTGAGGGTGCGAGGCCTGGGATCATAAAGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000544060.1 |
||
| CDS TCA 72 bp | ATCCCAGGCCTCGCACCCTCACCAACTGGGCTGCTTTaGGTCTGGAAAGACAGGTCCTGGAACAATCAATCT | + |
|
Preference number: 6 (lower is better) Translates to: IPGLAPSPTGLL*VWKDRSWNNQS Trigger: AGATTGATTGTTCCAGGACCTGTCTTTCCAGACTCAAAGCAGCCCAGTTGGTGAGGGTGCGAGGCCTGGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000544060.1 |
||
| CDS TCA 72 bp | TCTCAGAATTTCACATGTCCCATTTTGAGCACTTCATaGAAATGCAAACTGCCCGCGTTCTCCGCTTCCATT | + |
|
Preference number: 6 (lower is better) Translates to: SQNFTCPILSTS*KCKLPAFSASI Trigger: AATGGAAGCGGAGAACGCGGGCAGTTTGCATTTTCATGAAGTGCTCAAAATGGGACATGTGAAATTCTGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000266775.13 |
||
| CDS TCA 72 bp | CTTACTACTACTCTCAGAATTTCACATGTCCCATTTTaGGCACTTCATGAAAATGCAAACTGCCCGCGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: LTTTLRISHVPF*ALHENANCPRS Trigger: AGAACGCGGGCAGTTTGCATTTTCATGAAGTGCTCAAAATGGGACATGTGAAATTCTGAGAGTAGTAGTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000266775.13 |
||
| CDS TCA 72 bp | AGAAAGGTTAATAAGACTTATCCAAGATTATACTTGTaGCAGGATTTGAACCCAGACAGTCTAAATTTGGAG | + |
|
Preference number: 6 (lower is better) Translates to: RKVNKTYPRLYL*QDLNPDSLNLE Trigger: CTCCAAATTTAGACTGTCTGGGTTCAAATCCTGTCACAAGTATAATCTTGGATAAGTCTTATTAACCTTTCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000544060.1 ENST00000545698.1 |
||