Pregenerated sensors for TBC1D3I (Homo sapiens)

Ensembl gene IDs: ENSG00000274933, ENSG00000282144

Ensembl transcript IDs: ENST00000616671.4

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	TCTTATGTGCCATGGGACTGCAAAACATCATTATTAGGGGCAGCTGGATGGAAGACCCTTGCTCGGGTTTaGCTGGGGGTGGCAGGTCCC	+
Preference number: 2 (lower is better) Translates to: SYVPWDCKTSLLGAAGWKTLARV*LGVAGP Trigger: GGGACCTGCCACCCCCAGCCAAACCCGAGCAAGGGT...CTTCCATCCAGCTGCCCCTAATAATGATGTTTTGCAGTCCCATGGCACATAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000616671.4
3UTR-3UTR CCA 90 bp	CAAAACATCATTATTAGGGGCAGCTGGATGGAAGGTATAGGAGGATACTATAGTTTGCTCGGGTTTGGCTaGGGGTGGCAGGTCCCCCTG	+
Preference number: 2 (lower is better) Translates to: QNIIIRGSWMEGIGGYYSLLGFG*GWQVPL Trigger: CAGGGGGACCTGCCACCCCCAGCCAAACCCGAGCAA...ACTATAGTATCCTCCTATACCTTCCATCCAGCTGCCCCTAATAATGATGTTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000616671.4
3UTR-3UTR CAA 90 bp	TCTTATGTGCCATGGGACTGCAAAACATCATTATTAGGGGCAGCTGGATGGAAGGACCCTTGCTCGGGTTaGGCTGGGGGTGGCAGGTCC	+
Preference number: 3 (lower is better) Translates to: SYVPWDCKTSLLGAAGWKDPCSG*AGGGRS Trigger: GGACCTGCCACCCCCAGCCAAACCCGAGCAAGGGTC...CTTCCATCCAGCTGCCCCTAATAATGATGTTTTGCAGTCCCATGGCACATAAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000616671.4
CDS-3UTR TCA 90 bp	TCTTATGTGCCATGGGACTGCAAAACATCATTATTAGGGGCAGCTGGATGGAAGACCTGGACGTCTTCGTaGGGCGCTCTGATGCCCCAT	+
Preference number: 4 (lower is better) Translates to: SYVPWDCKTSLLGAAGWKTWTSS*GALMPH Trigger: ATGGGGCATCAGAGCGCCTCACGAAGACGTCCAGGT...CTTCCATCCAGCTGCCCCTAATAATGATGTTTTGCAGTCCCATGGCACATAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000616671.4
CDS-3UTR GCA 90 bp	TCTTATGTGCCATGGGACTGCAAAACATCATTATTAGGGGCAGCTGGATGGAAGCTCGACCTCTCAAATTaGTGGGATTACAGGTGTGAG	+
Preference number: 4 (lower is better) Translates to: SYVPWDCKTSLLGAAGWKLDLSN*WDYRCE Trigger: CTCACACCTGTAATCCCAGCAATTTGAGAGGTCGAG...CTTCCATCCAGCTGCCCCTAATAATGATGTTTTGCAGTCCCATGGCACATAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000616671.4
CDS-3UTR CCA 90 bp	TCTTATGTGCCATGGGACTGCAAAACATCATTATTAGGGGCAGCTGGATGGAAGATTATTAGGGGCAGCTaGATGGAAGGTATAGGAGGA	+
Preference number: 4 (lower is better) Translates to: SYVPWDCKTSLLGAAGWKIIRGS*MEGIGG Trigger: TCCTCCTATACCTTCCATCCAGCTGCCCCTAATAAT...CTTCCATCCAGCTGCCCCTAATAATGATGTTTTGCAGTCCCATGGCACATAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000616671.4
CDS-3UTR GCA 90 bp	TCTTATGTGCCATGGGACTGCAAAACATCATTATTAGGGGCAGCTGGATGGAAGTATGTGCCATGGGACTaGAAAACATCATTATTAGGG	+
Preference number: 4 (lower is better) Translates to: SYVPWDCKTSLLGAAGWKYVPWD*KTSLLG Trigger: CCCTAATAATGATGTTTTGCAGTCCCATGGCACATA...CTTCCATCCAGCTGCCCCTAATAATGATGTTTTGCAGTCCCATGGCACATAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000616671.4
CDS-3UTR CCA 90 bp	TCTTATGTGCCATGGGACTGCAAAACATCATTATTAGGGGCAGCTGGATGGAAGATTTCTTATGTGCCATaGGACTGCAAAACATCATTA	+
Preference number: 4 (lower is better) Translates to: SYVPWDCKTSLLGAAGWKISYVP*DCKTSL Trigger: TAATGATGTTTTGCAGTCCCATGGCACATAAGAAAT...CTTCCATCCAGCTGCCCCTAATAATGATGTTTTGCAGTCCCATGGCACATAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000616671.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu