Pregenerated sensors for SYNJ2-IT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000233496

Ensembl transcript IDs: ENST00000442328.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GTATGCCTCCTTGTGCTACATGAGATCCAGGAAGGAGCACAGCTTTaGGAACTGAGGGAGCCTGAGCAGGGAAGCCACGCACCCTGTCAC	+
Preference number: 5 (lower is better) Translates to: VCLLVLHEIQEGAQL*ELREPEQGSHAPCH Trigger: GTGACAGGGTGCGTGGCTTCCCTGCTCAGGCTCCCTCAGTTCCCAAAGCTGTGCTCCTTCCTGGATCTCATGTAGCACAAGGAGGCATAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000442328.1
CDS GCA 90 bp	GTCAAGATGGCTGTGTTTTTCTCCGGCCACATTCAGCAACACAAGTaGATGCAGGGTGCAGAGGAGGGCGGGAGAGGGCTAGAGTCACTA	+
Preference number: 5 (lower is better) Translates to: VKMAVFFSGHIQQHK*MQGAEEGGRGLESL Trigger: TAGTGACTCTAGCCCTCTCCCGCCCTCCTCTGCACCCTGCATGCACTTGTGTTGCTGAATGTGGCCGGAGAAAAACACAGCCATCTTGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000442328.1
CDS GCA 90 bp	GCACCCTGTCACACTTCAATTTCACCACTCAGCAAAGGGTCTAGATaGCCACTGTGTGCCAGGCATGGTTCTAGGCTCTTTGGCTGGGCG	+
Preference number: 5 (lower is better) Translates to: APCHTSISPLSKGSR*PLCARHGSRLFGWA Trigger: CGCCCAGCCAAAGAGCCTAGAACCATGCCTGGCACACAGTGGGCATCTAGACCCTTTGCTGAGTGGTGAAATTGAAGTGTGACAGGGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000442328.1
CDS CCA 72 bp	CTTGTGCTACATGAGATCCAGGAAGGAGCACAGCTTTaGGAACTGAGGGAGCCTGAGCAGGGAAGCCACGCA	+
Preference number: 6 (lower is better) Translates to: LVLHEIQEGAQL*ELREPEQGSHA Trigger: TGCGTGGCTTCCCTGCTCAGGCTCCCTCAGTTCCCAAAGCTGTGCTCCTTCCTGGATCTCATGTAGCACAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000442328.1
CDS GCA 72 bp	AGAAGCCATGTGGTGCGACCCACGTATGCCTCCTTGTaGTACATGAGATCCAGGAAGGAGCACAGCTTTGGG	+
Preference number: 6 (lower is better) Translates to: RSHVVRPTYASL*YMRSRKEHSFG Trigger: CCCAAAGCTGTGCTCCTTCCTGGATCTCATGTAGCACAAGGAGGCATACGTGGGTCGCACCACATGGCTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000442328.1
CDS CAA 72 bp	TCTAGAAGCCATGTGGTGCGACCCACGTATGCCTCCTaGTGCTACATGAGATCCAGGAAGGAGCACAGCTTT	+
Preference number: 6 (lower is better) Translates to: SRSHVVRPTYAS*CYMRSRKEHSF Trigger: AAAGCTGTGCTCCTTCCTGGATCTCATGTAGCACAAGGAGGCATACGTGGGTCGCACCACATGGCTTCTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000442328.1
CDS GCA 72 bp	CACACTTCAATTTCACCACTCAGCAAAGGGTCTAGATaGCCACTGTGTGCCAGGCATGGTTCTAGGCTCTTT	+
Preference number: 6 (lower is better) Translates to: HTSISPLSKGSR*PLCARHGSRLF Trigger: AAAGAGCCTAGAACCATGCCTGGCACACAGTGGGCATCTAGACCCTTTGCTGAGTGGTGAAATTGAAGTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000442328.1

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