Pregenerated sensors for SYCP3 (Homo sapiens)
Ensembl gene IDs: ENSG00000139351Ensembl transcript IDs: ENST00000392927.7, ENST00000478139.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACCATATTTAGATGCTTCCTGACGCAATGGCCGAGGACCAGTTACTaGTCGTCGACAGGCGTCCTCCACAACTCCTCCACAAGCGCGCTT | + |
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Preference number: 5 (lower is better) Translates to: TIFRCFLTQWPRTSY*SSTGVLHNSSTSAL Trigger: AAGCGCGCTTGTGGAGGAGTTGTGGAGGACGCCTGTCGACGACCAGTAACTGGTCCTCGGCCATTGCGTCAGGAAGCATCTAAATATGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS CCA 90 bp | TGTCATCCCTACCCCCAATATCCTCACTTGCAGGTAACACAAGTCTaGCCATTAAAAGTCAACAATGTTCTGACTACAGACATCCTTAGG | + |
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Preference number: 5 (lower is better) Translates to: CHPYPQYPHLQVTQV*PLKVNNVLTTDILR Trigger: CCTAAGGATGTCTGTAGTCAGAACATTGTTGACTTTTAATGGCCAGACTTGTGTTACCTGCAAGTGAGGATATTGGGGGTAGGGATGACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS TCA 90 bp | ACTGCCCAACATGAGATGTACTGCACCTTCAATAACATCTTCCTCTaGTCCACTCAGATCTTTCTTATCTTCAGTCTCAAAGTCATAGGC | + |
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Preference number: 5 (lower is better) Translates to: TAQHEMYCTFNNIFL*STQIFLIFSLKVIG Trigger: GCCTATGACTTTGAGACTGAAGATAAGAAAGATCTGAGTGGATCAGAGGAAGATGTTATTGAAGGTGCAGTACATCTCATGTTGGGCAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS TCA 90 bp | AAACTAAGTTGTACGATAGTCTCAATGGGTTCAAAACAAATGAACTaGAGGACATCACTGCCCAACATGAGATGTACTGCACCTTCAATA | + |
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Preference number: 5 (lower is better) Translates to: KLSCTIVSMGSKQMN*RTSLPNMRCTAPSI Trigger: TATTGAAGGTGCAGTACATCTCATGTTGGGCAGTGATGTCCTTCAGTTCATTTGTTTTGAACCCATTGAGACTATCGTACAACTTAGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS CCA 90 bp | CTACAATTGCTCAAACAAGAATTTGATCCAAAACAGTATTGTTGCTaGCATCCAGGCTCTAACCATTATACATACTGTTTCTCTGTCTAT | + |
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Preference number: 5 (lower is better) Translates to: LQLLKQEFDPKQYCC*HPGSNHYTYCFSVY Trigger: ATAGACAGAGAAACAGTATGTATAATGGTTAGAGCCTGGATGCCAGCAACAATACTGTTTTGGATCAAATTCTTGTTTGAGCAATTGTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS TCA 72 bp | GCGTCCTCCACAACTCCTCCACAAGCGCGCTTCACCTaGGGTGGCCCCTTCTCCGCGACGCTTCTGAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: ASSTTPPQARFT*GGPFSATLLRQ Trigger: TTGCCTCAGAAGCGTCGCGGAGAAGGGGCCACCTCAGGTGAAGCGCGCTTGTGGAGGAGTTGTGGAGGACGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000392927.7 ENST00000478139.1 |
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| CDS CCA 72 bp | AGATGCTTCCTGACGCAATGGCCGAGGACCAGTTACTaGTCGTCGACAGGCGTCCTCCACAACTCCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: RCFLTQWPRTSY*SSTGVLHNSST Trigger: TGTGGAGGAGTTGTGGAGGACGCCTGTCGACGACCAGTAACTGGTCCTCGGCCATTGCGTCAGGAAGCATCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS CCA 72 bp | TACCCCCAATATCCTCACTTGCAGGTAACACAAGTCTaGCCATTAAAAGTCAACAATGTTCTGACTACAGAC | + |
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Preference number: 6 (lower is better) Translates to: YPQYPHLQVTQV*PLKVNNVLTTD Trigger: GTCTGTAGTCAGAACATTGTTGACTTTTAATGGCCAGACTTGTGTTACCTGCAAGTGAGGATATTGGGGGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS TCA 72 bp | GCTAACTATACAATGATTGGTTCAAGAATGGGCAAATaGTCCAAACTCCCATCAGTCATATTTTCCCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: ANYTMIGSRMGK*SKLPSVIFSQR Trigger: CCTCTGGGAAAATATGACTGATGGGAGTTTGGATCATTTGCCCATTCTTGAACCAATCATTGTATAGTTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS CAA 90 bp | ATAATCTGTCCATGGTTTCACAGCTACAATTGCTCAAACAAGAATTaGATCCAAAACAGTATTGTTGCTGGCATCCAGGCTCTAACCATT | + |
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Preference number: 6 (lower is better) Translates to: IICPWFHSYNCSNKN*IQNSIVAGIQALTI Trigger: AATGGTTAGAGCCTGGATGCCAGCAACAATACTGTTTTGGATCAAATTCTTGTTTGAGCAATTGTAGCTGTGAAACCATGGACAGATTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS CAA 90 bp | ATGAGTAAACTGAGGCATAATCTGTCCATGGTTTCACAGCTACAATaGCTCAAACAAGAATTTGATCCAAAACAGTATTGTTGCTGGCAT | + |
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Preference number: 6 (lower is better) Translates to: MSKLRHNLSMVSQLQ*LKQEFDPKQYCCWH Trigger: ATGCCAGCAACAATACTGTTTTGGATCAAATTCTTGTTTGAGCAATTGTAGCTGTGAAACCATGGACAGATTATGCCTCAGTTTACTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS GCA 72 bp | TTGCTCAAACAAGAATTTGATCCAAAACAGTATTGTTaGTGGCATCCAGGCTCTAACCATTATACATACTGT | + |
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Preference number: 6 (lower is better) Translates to: LLKQEFDPKQYC*WHPGSNHYTYC Trigger: ACAGTATGTATAATGGTTAGAGCCTGGATGCCAGCAACAATACTGTTTTGGATCAAATTCTTGTTTGAGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS CAA 72 bp | AGATGCTCGAGTTCCTGTTACAAAATGGCATCATATTaGCATATAACCAATGCACATCCTTCCACATACTTT | + |
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Preference number: 6 (lower is better) Translates to: RCSSSCYKMASY*HITNAHPSTYF Trigger: AAAGTATGTGGAAGGATGTGCATTGGTTATATGCAAATATGATGCCATTTTGTAACAGGAACTCGAGCATCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS GCA 72 bp | CCAAACAATATAAATGCCTTTTATGAGTATGGTATGTaGCTATACGTCTGTGGTTTACAGTTCAGTAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: PNNINAFYEYGM*LYVCGLQFSRF Trigger: AAACCTACTGAACTGTAAACCACAGACGTATAGGCACATACCATACTCATAAAAGGCATTTATATTGTTTGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS CAA 72 bp | GGGAAGACCATACCTGAAAATGCTTTACAAACTAAGTaGTACGATAGTCTCAATGGGTTCAAAACAAATGAA | + |
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Preference number: 6 (lower is better) Translates to: GKTIPENALQTK*YDSLNGFKTNE Trigger: TTCATTTGTTTTGAACCCATTGAGACTATCGTACAACTTAGTTTGTAAAGCATTTTCAGGTATGGTCTTCCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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| CDS CCA 72 bp | AATAAAAGGCTAGGTTGTCCATTCCTACTTGAGACTTaGTTGATTATAAACCTAATCATGATACCAACAAGT | + |
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Preference number: 6 (lower is better) Translates to: NKRLGCPFLLET*LIINLIMIPTS Trigger: ACTTGTTGGTATCATGATTAGGTTTATAATCAACCAAGTCTCAAGTAGGAATGGACAACCTAGCCTTTTATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478139.1 |
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