RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SYCP2L (Homo sapiens)

Ensembl gene IDs: ENSG00000153157

Ensembl transcript IDs: ENST00000283141.11, ENST00000341041.8, ENST00000487561.2, ENST00000543878.5

Found 192 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAGGAAATTaGATGCGTACAGAGCACGAAGTCTGGCTAACAAGGCCTGAGCCA +
Preference number: 1 (lower is better)
Translates to: LNSAVPRDDVWRGGN*MRTEHEVWLTRPEP
Trigger: TGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTCTGTACGCATTCAATTTCCTCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
3UTR CCA 90 bp GAGGCAGGTTCCCCAATAACAGGTGGCTCAGATTGGTCATTTAAGTaGAGAGTTATTAGGCAGCGGTCATCTTCAGCACTCATAAACTCC +
Preference number: 1 (lower is better)
Translates to: EAGSPITGGSDWSFK*RVIRQRSSSALINS
Trigger: GGAGTTTATGAGTGCTGAAGATGACCGCTGCCTAATAACTCTCCACTTAAATGACCAATCTGAGCCACCTGTTATTGGGGAACCTGCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR TCA 90 bp AAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATaGTGTTTGGAGGGGAGGAAATTGAATGCGTACAGAGCACGAAGT +
Preference number: 1 (lower is better)
Translates to: KLPTYILSELSSSQG*CLEGRKLNAYRARS
Trigger: ACTTCGTGCTCTGTACGCATTCAATTTCCTCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
3UTR TCA 90 bp ACTGGGACTCTCCCTGTCTTCTTTATCAGACTTACTAAAAAGTTCTaGGGAGATTTTCGTCTGGTCAGGCAACATCTGTTTGTCTTCTCC +
Preference number: 1 (lower is better)
Translates to: TGTLPVFFIRLTKKF*GDFRLVRQHLFVFS
Trigger: GGAGAAGACAAACAGATGTTGCCTGACCAGACGAAAATCTCCTCAGAACTTTTTAGTAAGTCTGATAAAGAAGACAGGGAGAGTCCCAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR TCA 90 bp AAATGGATAATAACCCAACTGCAAACTACCAACATATATTCTATCTaGACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAGGAAATT +
Preference number: 1 (lower is better)
Translates to: KWIITQLQTTNIYSI*TQQFPGMMFGGEEI
Trigger: AATTTCCTCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATTATCCATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
3UTR GCA 90 bp TCTTGGAATTTTTGTTCAGAAGTCTTTGGAGATGTGGTGTTATTTTaGTCGGGTATTTCTTTCTCTGATGGTGATAGAAGCTTAGCTTGG +
Preference number: 1 (lower is better)
Translates to: SWNFCSEVFGDVVLF*SGISFSDGDRSLAW
Trigger: CCAAGCTAAGCTTCTATCACCATCAGAGAAAGAAATACCCGAGCAAAATAACACCACATCTCCAAAGACTTCTGAACAAAAATTCCAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR TCA 90 bp GAGAAAGGGGATCCCGGAGCAACCTCTTCTTCCAATCTTGATTGTTGTGACTTAAGCAGTTCCCAGGGATaGTGTTTGGAGGGGAGGAAA +
Preference number: 2 (lower is better)
Translates to: EKGDPGATSSSNLDCCDLSSSQG*CLEGRK
Trigger: TTTCCTCCCCTCCAAACATCATCCCTGGGAACTGCT...TAAGTCACAACAATCAAGATTGGAAGAAGAGGTTGCTCCGGGATCCCCTTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR GCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAGCCCAGGCTGAGGGCTaGAATCATAAAACCAGGCTT +
Preference number: 2 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGAQAEG*NHKTRL
Trigger: AAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGC...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
3UTR-3UTR TCA 90 bp ATGGCAGAACCGTTCAAGTTCTCTGGCACAACTTCTAGGGATGAAGTGGAAATTTGGAGGGGAGGAAATTaGATGCGTACAGAGCACGAA +
Preference number: 2 (lower is better)
Translates to: MAEPFKFSGTTSRDEVEIWRGGN*MRTEHE
Trigger: TTCGTGCTCTGTACGCATTCAATTTCCTCCCCTCCA...AATTTCCACTTCATCCCTAGAAGTTGTGCCAGAGAACTTGAACGGTTCTGCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR CCA 90 bp ATGGCAGAACCGTTCAAGTTCTCTGGCACAACTTCTAGGGATGAAGTGGAAATTCTCTTTCAAGGCCACTaGGACTCTCCCTGTCTTCTT +
Preference number: 2 (lower is better)
Translates to: MAEPFKFSGTTSRDEVEILFQGH*DSPCLL
Trigger: AAGAAGACAGGGAGAGTCCCAGTGGCCTTGAAAGAG...AATTTCCACTTCATCCCTAGAAGTTGTGCCAGAGAACTTGAACGGTTCTGCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR CCA 90 bp GTGGTGTTATTTTGCTCGGGTATTTCTTTCTCTGATGGTGATAGAAGCTTAGCTACAGAGCACGAAGTCTaGCTAACAAGGCCTGAGCCA +
Preference number: 2 (lower is better)
Translates to: VVLFCSGISFSDGDRSLATEHEV*LTRPEP
Trigger: TGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTCTGT...AGCTAAGCTTCTATCACCATCAGAGAAAGAAATACCCGAGCAAAATAACACCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR GCA 90 bp TCTTTGGAGATGTGGTGTTATTTTGCTCGGGTATTTCTTTCTCTGATGGTGATAGCCCAGGCTGAGGGCTaGAATCATAAAACCAGGCTT +
Preference number: 2 (lower is better)
Translates to: SLEMWCYFARVFLSLMVIAQAEG*NHKTRL
Trigger: AAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGC...TATCACCATCAGAGAAAGAAATACCCGAGCAAAATAACACCACATCTCCAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR CCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCACAGAGCACGAAGTCTaGCTAACAAGGCCTGAGCCA +
Preference number: 2 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPTEHEV*LTRPEP
Trigger: TGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTCTGT...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
3UTR-3UTR CCA 90 bp ATGGCAGAACCGTTCAAGTTCTCTGGCACAACTTCTAGGGATGAAGTGGAAATTTCTATAGGACAGTGCTaGTCTAGAGTAAGCCTCCAT +
Preference number: 2 (lower is better)
Translates to: MAEPFKFSGTTSRDEVEISIGQC*SRVSLH
Trigger: ATGGAGGCTTACTCTAGACCAGCACTGTCCTATAGA...AATTTCCACTTCATCCCTAGAAGTTGTGCCAGAGAACTTGAACGGTTCTGCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR TCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCTGGAGGGGAGGAAATTaGATGCGTACAGAGCACGAA +
Preference number: 2 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPWRGGN*MRTEHE
Trigger: TTCGTGCTCTGTACGCATTCAATTTCCTCCCCTCCA...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
3UTR-3UTR GCA 90 bp GGTGCTTTCTTTGCATTTTCTGAATTAAACGGACGCTTTCTGTACCTAAGCTCAGGGGAGGAAATTGAATaGGTACAGAGCACGAAGTCT +
Preference number: 2 (lower is better)
Translates to: GAFFAFSELNGRFLYLSSGEEIE*VQSTKS
Trigger: AGACTTCGTGCTCTGTACGCATTCAATTTCCTCCCC...TGAGCTTAGGTACAGAAAGCGTCCGTTTAATTCAGAAAATGCAAAGAAAGCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR TCA 90 bp GTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGATGTCTATATAAAAAGTaGCACTCTGACTTCCTAGGT +
Preference number: 2 (lower is better)
Translates to: VMLKFITASFGSVTESHRCLYKK*HSDFLG
Trigger: ACCTAGGAAGTCAGAGTGTCACTTTTTATATAGACA...TCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000341041.8
ENST00000487561.2
3UTR-3UTR GCA 90 bp TTTATCTTCTCCGTTTCTGTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGGTTTTCTCATCTCATaGTCATCAGCAAAAGCAGCA +
Preference number: 2 (lower is better)
Translates to: FIFSVSVMLKFITASFGSGFLIS*SSAKAA
Trigger: TGCTGCTTTTGCTGATGAGCATGAGATGAGAAAACC...ACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAACAGAAACGGAGAAGATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000487561.2
3UTR CAA 90 bp GGGATTTCTTTTTCTGGTTACTGGTCCAAGATAGTTCACTGGTACTaGAATCTTGATTACTCTCAGAGAAGAGATGTTTTCTGTAATGAG +
Preference number: 2 (lower is better)
Translates to: GISFSGYWSKIVHWY*NLDYSQRRDVFCNE
Trigger: CTCATTACAGAAAACATCTCTTCTCTGAGAGTAATCAAGATTCAAGTACCAGTGAACTATCTTGGACCAGTAACCAGAAAAAGAAATCCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR TCA 90 bp GCTGATAATCATGGGCTTCTTCAGGTAAATGATAAATATCTTTATCTTCTCCGTAACATATATTCTATCTaGACTCAGCAGTTCCCAGGG +
Preference number: 2 (lower is better)
Translates to: ADNHGLLQVNDKYLYLLRNIYSI*TQQFPG
Trigger: CCCTGGGAACTGCTGAGTTCAGATAGAATATATGTT...ACGGAGAAGATAAAGATATTTATCATTTACCTGAAGAAGCCCATGATTATCAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR TCA 90 bp TCTTTGGAGATGTGGTGTTATTTTGCTCGGGTATTTCTTTCTCTGATGGTGATATGTCTATATAAAAAGTaGCACTCTGACTTCCTAGGT +
Preference number: 2 (lower is better)
Translates to: SLEMWCYFARVFLSLMVICLYKK*HSDFLG
Trigger: ACCTAGGAAGTCAGAGTGTCACTTTTTATATAGACA...TATCACCATCAGAGAAAGAAATACCCGAGCAAAATAACACCACATCTCCAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR-3UTR TCA 90 bp GCTGATAATCATGGGCTTCTTCAGGTAAATGATAAATATCTTTATCTTCTCCGTTCTGACTTCCTAGGTTaGAGTCGATCCAAAATTTCT +
Preference number: 2 (lower is better)
Translates to: ADNHGLLQVNDKYLYLLRSDFLG*SRSKIS
Trigger: AGAAATTTTGGATCGACTTCAACCTAGGAAGTCAGA...ACGGAGAAGATAAAGATATTTATCATTTACCTGAAGAAGCCCATGATTATCAGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341041.8
ENST00000487561.2
3UTR-3UTR CAA 90 bp GAAGTCAGGGACCCCGAACGGAGGGACCGGCTGAAGGTGACTATCAGAGGCAGGTTGGAGGGGAGGAAATaGAATGCGTACAGAGCACGA +
Preference number: 3 (lower is better)
Translates to: EVRDPERRDRLKVTIRGRLEGRK*NAYRAR
Trigger: TCGTGCTCTGTACGCATTCAATTTCCTCCCCTCCAA...CCTGCCTCTGATAGTCACCTTCAGCCGGTCCCTCCGTTCGGGGTCCCTGACTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR TCA 72 bp GCAGTTCCCAGGGATGATGTTTGGAGGGGAGGAAATTaGATGCGTACAGAGCACGAAGTCTGGCTAACAAGG +
Preference number: 3 (lower is better)
Translates to: AVPRDDVWRGGN*MRTEHEVWLTR
Trigger: CCTTGTTAGCCAGACTTCGTGCTCTGTACGCATTCAATTTCCTCCCCTCCAAACATCATCCCTGGGAACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
3UTR-3UTR CAA 90 bp CCTTCTGGCAACTCTCTTTCTTCTGTTATTGAGAAAGGGGATCCCGGAGCAACCGTAATGAGACTTAGGTaGTTGCGGGAAGTCAGGGAC +
Preference number: 3 (lower is better)
Translates to: PSGNSLSSVIEKGDPGATVMRLR*LREVRD
Trigger: GTCCCTGACTTCCCGCAACAACCTAAGTCTCATTAC...GGTTGCTCCGGGATCCCCTTTCTCAATAACAGAAGAAAGAGAGTTGCCAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR CCA 72 bp TCAGAGGCAGGTTCCCCAATAACAGGTGGCTCAGATTaGTCATTTAAGTGGAGAGTTATTAGGCAGCGGTCA +
Preference number: 3 (lower is better)
Translates to: SEAGSPITGGSD*SFKWRVIRQRS
Trigger: TGACCGCTGCCTAATAACTCTCCACTTAAATGACCAATCTGAGCCACCTGTTATTGGGGAACCTGCCTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR CCA 72 bp TCCCCAATAACAGGTGGCTCAGATTGGTCATTTAAGTaGAGAGTTATTAGGCAGCGGTCATCTTCAGCACTC +
Preference number: 3 (lower is better)
Translates to: SPITGGSDWSFK*RVIRQRSSSAL
Trigger: GAGTGCTGAAGATGACCGCTGCCTAATAACTCTCCACTTAAATGACCAATCTGAGCCACCTGTTATTGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR GCA 72 bp GAATTGAACCTCAGCACTTGCAGATCACAGAAAGATTaGAGATCAGCAGACTGTTTCCCCCAGAATTCCAGA +
Preference number: 3 (lower is better)
Translates to: ELNLSTCRSQKD*RSADCFPQNSR
Trigger: TCTGGAATTCTGGGGGAAACAGTCTGCTGATCTGCAATCTTTCTGTGATCTGCAAGTGCTGAGGTTCAATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR TCA 72 bp ACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATaGTGTTTGGAGGGGAGGAAATTGAATGCGTACAGA +
Preference number: 3 (lower is better)
Translates to: TYILSELSSSQG*CLEGRKLNAYR
Trigger: TCTGTACGCATTCAATTTCCTCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
3UTR-3UTR CAA 90 bp ATGGCAGAACCGTTCAAGTTCTCTGGCACAACTTCTAGGGATGAAGTGGAAATTAGATGTGGTGTTATTTaGCTCGGGTATTTCTTTCTC +
Preference number: 3 (lower is better)
Translates to: MAEPFKFSGTTSRDEVEIRCGVI*LGYFFL
Trigger: GAGAAAGAAATACCCGAGCAAAATAACACCACATCT...AATTTCCACTTCATCCCTAGAAGTTGTGCCAGAGAACTTGAACGGTTCTGCCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR TCA 72 bp CTCCCTGTCTTCTTTATCAGACTTACTAAAAAGTTCTaGGGAGATTTTCGTCTGGTCAGGCAACATCTGTTT +
Preference number: 3 (lower is better)
Translates to: LPVFFIRLTKKF*GDFRLVRQHLF
Trigger: AAACAGATGTTGCCTGACCAGACGAAAATCTCCTCAGAACTTTTTAGTAAGTCTGATAAAGAAGACAGGGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR GCA 72 bp TTTTGTTCAGAAGTCTTTGGAGATGTGGTGTTATTTTaGTCGGGTATTTCTTTCTCTGATGGTGATAGAAGC +
Preference number: 3 (lower is better)
Translates to: FCSEVFGDVVLF*SGISFSDGDRS
Trigger: GCTTCTATCACCATCAGAGAAAGAAATACCCGAGCAAAATAACACCACATCTCCAAAGACTTCTGAACAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
3UTR CCA 72 bp ATTTCTTTTTCTGGTTACTGGTCCAAGATAGTTCACTaGTACTTGAATCTTGATTACTCTCAGAGAAGAGAT +
Preference number: 3 (lower is better)
Translates to: ISFSGYWSKIVH*YLNLDYSQRRD
Trigger: ATCTCTTCTCTGAGAGTAATCAAGATTCAAGTACCAGTGAACTATCTTGGACCAGTAACCAGAAAAAGAAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp GAAGTCAGGGACCCCGAACGGAGGGACCGGCTGAAGGTGACTATCAGAGGCAGGCCGAAAGAGCCCTGGTaGCGGACCGCTCTTCGAGTC +
Preference number: 4 (lower is better)
Translates to: EVRDPERRDRLKVTIRGRPKEPW*RTALRV
Trigger: GACTCGAAGAGCGGTCCGCCACCAGGGCTCTTTCGG...CCTGCCTCTGATAGTCACCTTCAGCCGGTCCCTCCGTTCGGGGTCCCTGACTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp GAAGTCAGGGACCCCGAACGGAGGGACCGGCTGAAGGTGACTATCAGAGGCAGGGGCCACTGCCACTACTaGGAGGGAAAACTGGCAAGA +
Preference number: 4 (lower is better)
Translates to: EVRDPERRDRLKVTIRGRGHCHY*EGKLAR
Trigger: TCTTGCCAGTTTTCCCTCCCAGTAGTGGCAGTGGCC...CCTGCCTCTGATAGTCACCTTCAGCCGGTCCCTCCGTTCGGGGTCCCTGACTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR GCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGGCCGCTCAGCTTTGTTaGGCTCGGTCGGCCCTCTCC +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLAAQLC*ARSALS
Trigger: GGAGAGGGCCGACCGAGCGCAACAAAGCTGAGCGGC...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp GTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAGCCCGCTGGGGGCGCTaGCGAAAGAGCCCTGGTGGC +
Preference number: 4 (lower is better)
Translates to: VMLKFITASFGSVTESHRARWGR*RKSPGG
Trigger: GCCACCAGGGCTCTTTCGGCAGCGCCCCCAGCGGGC...TCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGCTGCCGAAAGAGCCCTaGTGGCGGACCGCTCTTCGA +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLLPKEP*WRTALR
Trigger: TCGAAGAGCGGTCCGCCACCAGGGCTCTTTCGGCAG...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR GCA 90 bp GTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGACGGTCGGCCCTCTCCTaGTTCCCCGCCCAAGAGCCC +
Preference number: 4 (lower is better)
Translates to: VMLKFITASFGSVTESHRRSALS*FPAQEP
Trigger: GGGCTCTTGGGCGGGGAAGCAGGAGAGGGCCGACCG...TCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAAAGAGCCCCGCCCGCTaGGGGCGCTGCCGAAAGAGC +
Preference number: 4 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGKSPAR*GRCRKS
Trigger: GCTCTTTCGGCAGCGCCCCCAGCGGGCGGGGCTCTT...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR GCA 90 bp GTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAGCCGCTCAGCTTTGTTaGGCTCGGTCGGCCCTCTCC +
Preference number: 4 (lower is better)
Translates to: VMLKFITASFGSVTESHRAAQLC*ARSALS
Trigger: GGAGAGGGCCGACCGAGCGCAACAAAGCTGAGCGGC...TCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTGGCCACTGCCACTACTaGGAGGGAAAACTGGCAAGA +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFGHCHY*EGKLAR
Trigger: TCTTGCCAGTTTTCCCTCCCAGTAGTGGCAGTGGCC...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp ATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAGTAAGGCTTCTTCGTTCCTaGAGCGACGCGCCGCTCAGC +
Preference number: 4 (lower is better)
Translates to: MLKFITASFGSVTESHRVRLLRS*SDAPLS
Trigger: GCTGAGCGGCGCGTCGCTTCAGGAACGAAGAAGCCT...TACTCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp GAAGTCAGGGACCCCGAACGGAGGGACCGGCTGAAGGTGACTATCAGAGGCAGGCTTACTAAAAAGTTCTaGGGAGATTTTCGTCTGGTC +
Preference number: 4 (lower is better)
Translates to: EVRDPERRDRLKVTIRGRLTKKF*GDFRLV
Trigger: GACCAGACGAAAATCTCCTCAGAACTTTTTAGTAAG...CCTGCCTCTGATAGTCACCTTCAGCCGGTCCCTCCGTTCGGGGTCCCTGACTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp GAAGTCAGGGACCCCGAACGGAGGGACCGGCTGAAGGTGACTATCAGAGGCAGGCTGGTACTTGAATCTTaGTTACTCTCAGAGAAGAGA +
Preference number: 4 (lower is better)
Translates to: EVRDPERRDRLKVTIRGRLVLES*LLSEKR
Trigger: TCTCTTCTCTGAGAGTAATCAAGATTCAAGTACCAG...CCTGCCTCTGATAGTCACCTTCAGCCGGTCCCTCCGTTCGGGGTCCCTGACTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTAGCAGTTCCCAGGGATaGTGTTTGGAGGGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFSSSQG*CLEGRK
Trigger: TTTCCTCCCCTCCAAACATCATCCCTGGGAACTGCT...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGTTCCGCAACTGTAATTaGCGAATCCGCCCCCTGAAG +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLFRNCN*RIRPLK
Trigger: CTTCAGGGGGCGGATTCGTCAATTACAGTTGCGGAA...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR GCA 90 bp GAAGTCAGGGACCCCGAACGGAGGGACCGGCTGAAGGTGACTATCAGAGGCAGGAGATCACAGAAAGATTaGAGATCAGCAGACTGTTTC +
Preference number: 4 (lower is better)
Translates to: EVRDPERRDRLKVTIRGRRSQKD*RSADCF
Trigger: GAAACAGTCTGCTGATCTGCAATCTTTCTGTGATCT...CCTGCCTCTGATAGTCACCTTCAGCCGGTCCCTCCGTTCGGGGTCCCTGACTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp GAAGTCAGGGACCCCGAACGGAGGGACCGGCTGAAGGTGACTATCAGAGGCAGGTCTTCTCCTAAAGCTTaGATGGAAACTTGTGATATG +
Preference number: 4 (lower is better)
Translates to: EVRDPERRDRLKVTIRGRSSPKA*METCDM
Trigger: CATATCACAAGTTTCCATTCAAGCTTTAGGAGAAGA...CCTGCCTCTGATAGTCACCTTCAGCCGGTCCCTCCGTTCGGGGTCCCTGACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTAGGTGTTCCAGGGCCTaGATATCCTGCTTAAGACTG +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFRCSRA*ISCLRL
Trigger: CAGTCTTAAGCAGGATATTCAGGCCCTGGAACACCT...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGTGGAGGGGAGGAAATTaGATGCGTACAGAGCACGAA +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLWRGGN*MRTEHE
Trigger: TTCGTGCTCTGTACGCATTCAATTTCCTCCCCTCCA...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTCTCTTTCAAGGCCACTaGGACTCTCCCTGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFLFQGH*DSPCLL
Trigger: AAGAAGACAGGGAGAGTCCCAGTGGCCTTGAAAGAG...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGTCTTTCTTCTGTTATTaGGAAAGGGGATCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLSFFCY*ERGSRS
Trigger: GCTCCGGGATCCCCTTTCTCAATAACAGAAGAAAGA...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTTTTGGGATCAGTCCCTaGCGAATTAGCAGAGGTTCA +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFFGISP*RISRGS
Trigger: TGAACCTCTGCTAATTCGGCAGGGACTGATCCCAAA...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCGCCCAGGCTGAGGGCTaGAATCATAAAACCAGGCTT +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLAQAEG*NHKTRL
Trigger: AAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGC...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCGCTTGGTCTTTCTCATaGCCACTGCCACTACTGGGA +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLAWSFS*PLPLLG
Trigger: TCCCAGTAGTGGCAGTGGCCATGAGAAAGACCAAGC...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGGAGGAGATTTTCGTCTaGTCAGGCAACATCTGTTTG +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLEEIFV*SGNICL
Trigger: CAAACAGATGTTGCCTGACCAGACGAAAATCTCCTC...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCCTCTTTCAAGGCCACTaGGACTCTCCCTGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLLFQGH*DSPCLL
Trigger: AAGAAGACAGGGAGAGTCCCAGTGGCCTTGAAAGAG...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTGATAGAAGCTTAGCTTaGTCTTTCTCATGGCCACTG +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFDRSLA*SFSWPL
Trigger: CAGTGGCCATGAGAAAGACCAAGCTAAGCTTCTATC...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCAGGCTTCTTCGTTCCTaGAGCGACGCGCCGCTCAGC +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPRLLRS*SDAPLS
Trigger: GCTGAGCGGCGCGTCGCTTCAGGAACGAAGAAGCCT...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTTCTACGAGGAATCGCTaGATACATTTCAGCAACAGT +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFSTRNR*IHFSNS
Trigger: ACTGTTGCTGAAATGTATTCAGCGATTCCTCGTAGA...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGTTGAACCTCAGCACTTaGAGATCACAGAAAGATTGC +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLLNLST*RSQKDC
Trigger: GCAATCTTTCTGTGATCTGCAAGTGCTGAGGTTCAA...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCGGGGAGGAAATTGAATaGGTACAGAGCACGAAGTCT +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLGEEIE*VQSTKS
Trigger: AGACTTCGTGCTCTGTACGCATTCAATTTCCTCCCC...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTACAGGTGGCTCAGATTaGTCATTTAAGTGGAGAGTT +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFTGGSD*SFKWRV
Trigger: AACTCTCCACTTAAATGACCAATCTGAGCCACCTGT...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTAGTCTGTTGTTTAGGTaGTTGAGAAAACGTCTACTG +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFSLLFR*LRKRLL
Trigger: CAGTAGACGTTTTCTCAATCACCTAAACAACAGACT...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTTCTTTGTTTTTCGCTTaGATAACGAGGCTTCTTCGT +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFSLFFA*ITRLLR
Trigger: ACGAAGAAGCCTCGTTATGCAAGCGAAAAACAAAGA...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGACTGGGAGGGAAAACTaGCAAGATTCTCAAATTACT +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLTGREN*QDSQIT
Trigger: AGTAATTTGAGAATCTTGCCAGTTTTCCCTCCCAGT...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGAAGTCTTTGGAGATGTaGTGTTATTTTGCTCGGGTA +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLKSLEM*CYFARV
Trigger: TACCCGAGCAAAATAACACCACATCTCCAAAGACTT...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp TCTTTGGAGATGTGGTGTTATTTTGCTCGGGTATTTCTTTCTCTGATGGTGATAACAGGCCAAACCACCTaGGCGCACGCACTCACCCTT +
Preference number: 4 (lower is better)
Translates to: SLEMWCYFARVFLSLMVITGQTT*AHALTL
Trigger: AAGGGTGAGTGCGTGCGCCCAGGTGGTTTGGCCTGT...TATCACCATCAGAGAAAGAAATACCCGAGCAAAATAACACCACATCTCCAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGAGACGATTATATTTTTaGGGAAAGTGGCTCTCTTTC +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLRRLYF*GKWLSF
Trigger: GAAAGAGAGCCACTTTCCTCAAAAATATAATCGTCT...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTTGTCTATATAAAAAGTaGCACTCTGACTTCCTAGGT +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFCLYKK*HSDFLG
Trigger: ACCTAGGAAGTCAGAGTGTCACTTTTTATATAGACA...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGTGTCTATATAAAAAGTaGCACTCTGACTTCCTAGGT +
Preference number: 4 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLCLYKK*HSDFLG
Trigger: ACCTAGGAAGTCAGAGTGTCACTTTTTATATAGACA...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTTCTTCTCCTAAAGCTTaGATGGAAACTTGTGATATG +
Preference number: 4 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFSSPKA*METCDM
Trigger: CATATCACAAGTTTCCATTCAAGCTTTAGGAGAAGA...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp ATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAGTATCTTTCTTCTGTTATTaGGAAAGGGGATCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: MLKFITASFGSVTESHRVSFFCY*ERGSRS
Trigger: GCTCCGGGATCCCCTTTCTCAATAACAGAAGAAAGA...TACTCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR GCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCTTGAACCTCAGCACTTaGAGATCACAGAAAGATTGC +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLLNLST*RSQKDC
Trigger: GCAATCTTTCTGTGATCTGCAAGTGCTGAGGTTCAA...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCACAGGTGGCTCAGATTaGTCATTTAAGTGGAGAGTT +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLTGGSD*SFKWRV
Trigger: AACTCTCCACTTAAATGACCAATCTGAGCCACCTGT...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCTCTTTGTTTTTCGCTTaGATAACGAGGCTTCTTCGT +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLSLFFA*ITRLLR
Trigger: ACGAAGAAGCCTCGTTATGCAAGCGAAAAACAAAGA...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp GTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAGTGGATTCTTCTGCCTaGTCTGTTTCTCTTTCAAGG +
Preference number: 4 (lower is better)
Translates to: VMLKFITASFGSVTESHRVDSSA*SVSLSR
Trigger: CCTTGAAAGAGAAACAGAGCAGGCAGAAGAATCCAC...TCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp GAGAAAGGGGATCCCGGAGCAACCTCTTCTTCCAATCTTGATTGTTGTGACTTAGAGGAGATTTTCGTCTaGTCAGGCAACATCTGTTTG +
Preference number: 4 (lower is better)
Translates to: EKGDPGATSSSNLDCCDLEEIFV*SGNICL
Trigger: CAAACAGATGTTGCCTGACCAGACGAAAATCTCCTC...TAAGTCACAACAATCAAGATTGGAAGAAGAGGTTGCTCCGGGATCCCCTTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp CCTTCTGGCAACTCTCTTTCTTCTGTTATTGAGAAAGGGGATCCCGGAGCAACCTCTTTTTCTGGTTACTaGTCCAAGATAGTTCACTGG +
Preference number: 4 (lower is better)
Translates to: PSGNSLSSVIEKGDPGATSFSGY*SKIVHW
Trigger: CCAGTGAACTATCTTGGACCAGTAACCAGAAAAAGA...GGTTGCTCCGGGATCCCCTTTCTCAATAACAGAAGAAAGAGAGTTGCCAGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCACTGGGAGGGAAAACTaGCAAGATTCTCAAATTACT +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLTGREN*QDSQIT
Trigger: AGTAATTTGAGAATCTTGCCAGTTTTCCCTCCCAGT...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp GGTGCTTTCTTTGCATTTTCTGAATTAAACGGACGCTTTCTGTACCTAAGCTCAGCTTGGTCTTTCTCATaGCCACTGCCACTACTGGGA +
Preference number: 4 (lower is better)
Translates to: GAFFAFSELNGRFLYLSSAWSFS*PLPLLG
Trigger: TCCCAGTAGTGGCAGTGGCCATGAGAAAGACCAAGC...TGAGCTTAGGTACAGAAAGCGTCCGTTTAATTCAGAAAATGCAAAGAAAGCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCAGTGGAAATTCCTTCTaGCAACTCTCTTTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLSGNSF*QLSFFC
Trigger: ACAGAAGAAAGAGAGTTGCCAGAAGGAATTTCCACT...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp GTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGATCCGTAATAAGTGATTaGAGCCAGAAAGCATCATCC +
Preference number: 4 (lower is better)
Translates to: VMLKFITASFGSVTESHRSVISD*SQKASS
Trigger: GGATGATGCTTTCTGGCTTCAATCACTTATTACGGA...TCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCAGACGATTATATTTTTaGGGAAAGTGGCTCTCTTTC +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLRRLYF*GKWLSF
Trigger: GAAAGAGAGCCACTTTCCTCAAAAATATAATCGTCT...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp GAGAAAGGGGATCCCGGAGCAACCTCTTCTTCCAATCTTGATTGTTGTGACTTAAACATATATTCTATCTaGACTCAGCAGTTCCCAGGG +
Preference number: 4 (lower is better)
Translates to: EKGDPGATSSSNLDCCDLNIYSI*TQQFPG
Trigger: CCCTGGGAACTGCTGAGTTCAGATAGAATATATGTT...TAAGTCACAACAATCAAGATTGGAAGAAGAGGTTGCTCCGGGATCCCCTTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCGACGAATCCGCCCCCTaGAGTTTACTAGAGCTCTGT +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPDESAP*SLLELC
Trigger: ACAGAGCTCTAGTAAACTTCAGGGGGCGGATTCGTC...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCCAGAAAGCATCATCCTaGGCCTTCCCAGTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPQKASS*AFPVLS
Trigger: AGACAGGACTGGGAAGGCCCAGGATGATGCTTTCTG...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCAGCAAAACTACCTTCTaGTATGTCTTTGTCTTCCAA +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLSKTTF*YVFVFQ
Trigger: TTGGAAGACAAAGACATACCAGAAGGTAGTTTTGCT...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp CCTTCTGGCAACTCTCTTTCTTCTGTTATTGAGAAAGGGGATCCCGGAGCAACCAGCAAAACTACCTTCTaGTATGTCTTTGTCTTCCAA +
Preference number: 4 (lower is better)
Translates to: PSGNSLSSVIEKGDPGATSKTTF*YVFVFQ
Trigger: TTGGAAGACAAAGACATACCAGAAGGTAGTTTTGCT...GGTTGCTCCGGGATCCCCTTTCTCAATAACAGAAGAAAGAGAGTTGCCAGAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGATGCATCCGTAATAAGTaGTTGAAGCCAGAAAGCATC +
Preference number: 4 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGCIRNK*LKPESI
Trigger: GATGCTTTCTGGCTTCAATCACTTATTACGGATGCA...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAAGCAATACACGGAAATaGATACACCCTTCTTTGGTC +
Preference number: 4 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGSNTRK*IHPSLV
Trigger: GACCAAAGAAGGGTGTATTCATTTCCGTGTATTGCT...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000283141.11
CDS-3UTR TCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCAGAGAGCTCACTCAGTaGGTGAGGATCTTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPRELTQ*VRILKL
Trigger: GAGCTTCAAGATCCTCACTCACTGAGTGAGCTCTCT...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp TCTTCTTCCAATCTTGATTGTTGTGACTTAGCAAAACTACCTTCTGGTATGTCTAGCAGTTCCCAGGGATaGTGTTTGGAGGGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: SSSNLDCCDLAKLPSGMSSSSQG*CLEGRK
Trigger: TTTCCTCCCCTCCAAACATCATCCCTGGGAACTGCT...AGACATACCAGAAGGTAGTTTTGCTAAGTCACAACAATCAAGATTGGAAGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAAACATATATTCTATCTaGACTCAGCAGTTCCCAGGG +
Preference number: 4 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGNIYSI*TQQFPG
Trigger: CCCTGGGAACTGCTGAGTTCAGATAGAATATATGTT...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp ATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAGTATCTACTGTCATAAGATaGCACATGCCTTCTGACAAA +
Preference number: 4 (lower is better)
Translates to: MLKFITASFGSVTESHRVSTVIR*HMPSDK
Trigger: TTTGTCAGAAGGCATGTGTCATCTTATGACAGTAGA...TACTCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487561.2
CDS-3UTR GCA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCCCTGGAAATAATCAATaGAGTGTCAAAGAAATCTTC +
Preference number: 4 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLPGNNQ*SVKEIF
Trigger: GAAGATTTCTTTGACACTGCATTGATTATTTCCAGG...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp AAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAGTATTCTCAGGTTTTCTCATCTCATaGTCATCAGCAAAAGCAGCA +
Preference number: 4 (lower is better)
Translates to: KFITASFGSVTESHRVFSGFLIS*SSAKAA
Trigger: TGCTGCTTTTGCTGATGAGCATGAGATGAGAAAACC...TGAGAATACTCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000487561.2
CDS-3UTR CCA 90 bp TGCCGGACATTTTACTCATCACTCCAGGGAAAGTCTGTTATGCTGAAATTCATCTCTATAGGACAGTGCTaGTCTAGAGTAAGCCTCCAT +
Preference number: 4 (lower is better)
Translates to: CRTFYSSLQGKSVMLKFISIGQC*SRVSLH
Trigger: ATGGAGGCTTACTCTAGACCAGCACTGTCCTATAGA...GATGAATTTCAGCATAACAGACTTTCCCTGGAGTGATGAGTAAAATGTCCGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAAGGTCTTTCATAAGATaGCACATGCCTTCTGACAAA +
Preference number: 4 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGRSFIR*HMPSDK
Trigger: TTTGTCAGAAGGCATGTGTCATCTTATGAAAGACCT...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp AAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAGTATTCTCAAGTCTGTTGTTTAGGTaGTTGAGAAAACGTCTACTG +
Preference number: 4 (lower is better)
Translates to: KFITASFGSVTESHRVFSSLLFR*LRKRLL
Trigger: CAGTAGACGTTTTCTCAATCACCTAAACAACAGACT...TGAGAATACTCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000341041.8
ENST00000487561.2
CDS-3UTR TCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGATCTGACTTCCTAGGTTaGAGTCGATCCAAAATTTCT +
Preference number: 4 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGSDFLG*SRSKIS
Trigger: AGAAATTTTGGATCGACTTCAACCTAGGAAGTCAGA...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGACTTTCTTATGAAGTCTaGGTTGAATTGAACCTCAGC +
Preference number: 4 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGLSYEV*VELNLS
Trigger: GCTGAGGTTCAATTCAACTCAGACTTCATAAGAAAG...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAAGATCACAGAAAGATTaGAGATCAGCAGACTGTTTC +
Preference number: 4 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGRSQKD*RSADCF
Trigger: GAAACAGTCTGCTGATCTGCAATCTTTCTGTGATCT...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp TCTTTGGAGATGTGGTGTTATTTTGCTCGGGTATTTCTTTCTCTGATGGTGATAGGGGAGGAAATTGAATaGGTACAGAGCACGAAGTCT +
Preference number: 4 (lower is better)
Translates to: SLEMWCYFARVFLSLMVIGEEIE*VQSTKS
Trigger: AGACTTCGTGCTCTGTACGCATTCAATTTCCTCCCC...TATCACCATCAGAGAAAGAAATACCCGAGCAAAATAACACCACATCTCCAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp GCTGATAATCATGGGCTTCTTCAGGTAAATGATAAATATCTTTATCTTCTCCGTCAGAAAGCATCATCCTaGGCCTTCCCAGTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: ADNHGLLQVNDKYLYLLRQKASS*AFPVLS
Trigger: AGACAGGACTGGGAAGGCCCAGGATGATGCTTTCTG...ACGGAGAAGATAAAGATATTTATCATTTACCTGAAGAAGCCCATGATTATCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAGAATACACCCTTCTTTaGTCACCAAGTCTGTTGTTT +
Preference number: 4 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGEYTLL*SPSLLF
Trigger: AAACAACAGACTTGGTGACCAAAGAAGGGTGTATTC...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000283141.11
CDS-3UTR CCA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGATCTTTTTCTGGTTACTaGTCCAAGATAGTTCACTGG +
Preference number: 4 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGSFSGY*SKIVHW
Trigger: CCAGTGAACTATCTTGGACCAGTAACCAGAAAAAGA...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp ATGGCAGAACCGTTCAAGTTCTCTGGCACAACTTCTAGGGATGAAGTGGAAATTAAGTCTTTGGAGATGTaGTGTTATTTTGCTCGGGTA +
Preference number: 4 (lower is better)
Translates to: MAEPFKFSGTTSRDEVEIKSLEM*CYFARV
Trigger: TACCCGAGCAAAATAACACCACATCTCCAAAGACTT...AATTTCCACTTCATCCCTAGAAGTTGTGCCAGAGAACTTGAACGGTTCTGCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp GCTGATAATCATGGGCTTCTTCAGGTAAATGATAAATATCTTTATCTTCTCCGTACAGAGCACGAAGTCTaGCTAACAAGGCCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: ADNHGLLQVNDKYLYLLRTEHEV*LTRPEP
Trigger: TGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTCTGT...ACGGAGAAGATAAAGATATTTATCATTTACCTGAAGAAGCCCATGATTATCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp TGCCGGACATTTTACTCATCACTCCAGGGAAAGTCTGTTATGCTGAAATTCATCAGTCTGTTGTTTAGGTaGTTGAGAAAACGTCTACTG +
Preference number: 4 (lower is better)
Translates to: CRTFYSSLQGKSVMLKFISLLFR*LRKRLL
Trigger: CAGTAGACGTTTTCTCAATCACCTAAACAACAGACT...GATGAATTTCAGCATAACAGACTTTCCCTGGAGTGATGAGTAAAATGTCCGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp TTTATCTTCTCCGTTTCTGTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTAGCAATACACGGAAATaGATACACCCTTCTTTGGTC +
Preference number: 4 (lower is better)
Translates to: FIFSVSVMLKFITASFGSSNTRK*IHPSLV
Trigger: GACCAAAGAAGGGTGTATTCATTTCCGTGTATTGCT...ACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAACAGAAACGGAGAAGATAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487561.2
CDS-3UTR TCA 90 bp CTTTATCTTCTCCGTTTCTGTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTCTGACTTCCTAGGTTaGAGTCGATCCAAAATTTCT +
Preference number: 4 (lower is better)
Translates to: LYLLRFCYAEIHHRFLRKSDFLG*SRSKIS
Trigger: AGAAATTTTGGATCGACTTCAACCTAGGAAGTCAGA...CTTCCGAAGGAAGCGGTGATGAATTTCAGCATAACAGAAACGGAGAAGATAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000487561.2
CDS-3UTR TCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCCCGTTTCTGTTATGCTaGAATTCATCACCGCTTCCT +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPPFLLC*NSSPLP
Trigger: AGGAAGCGGTGATGAATTTCAGCATAACAGAAACGG...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000283141.11
CDS-3UTR TCA 90 bp ATGGATTTCTATTTTCATGACTTCTTTGTAGCTGATAATCATGGGCTTCTTCAGAGGTGTTCCAGGGCCTaGATATCCTGCTTAAGACTG +
Preference number: 4 (lower is better)
Translates to: MDFYFHDFFVADNHGLLQRCSRA*ISCLRL
Trigger: CAGTCTTAAGCAGGATATTCAGGCCCTGGAACACCT...CTGAAGAAGCCCATGATTATCAGCTACAAAGAAGTCATGAAAATAGAAATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR GCA 90 bp GTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGACCTGGAAATAATCAATaGAGTGTCAAAGAAATCTTC +
Preference number: 4 (lower is better)
Translates to: VMLKFITASFGSVTESHRPGNNQ*SVKEIF
Trigger: GAAGATTTCTTTGACACTGCATTGATTATTTCCAGG...TCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000341041.8
ENST00000487561.2
CDS-3UTR GCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCGTGGATTCTTCTGCCTaGTCTGTTTCTCTTTCAAGG +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPVDSSA*SVSLSR
Trigger: CCTTGAAAGAGAAACAGAGCAGGCAGAAGAATCCAC...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR GCA 90 bp AAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAGTATTCTCAGATGTGGTGTTATTTTaGTCGGGTATTTCTTTCTCT +
Preference number: 4 (lower is better)
Translates to: KFITASFGSVTESHRVFSDVVLF*SGISFS
Trigger: AGAGAAAGAAATACCCGAGCAAAATAACACCACATC...TGAGAATACTCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCGATAGAAGCTTAGCTTaGTCTTTCTCATGGCCACTG +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPDRSLA*SFSWPL
Trigger: CAGTGGCCATGAGAAAGACCAAGCTAAGCTTCTATC...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp GAGAAAGGGGATCCCGGAGCAACCTCTTCTTCCAATCTTGATTGTTGTGACTTATTTTCTCATCTTCTTTaGTCACCAAGTCTGTTGTTT +
Preference number: 4 (lower is better)
Translates to: EKGDPGATSSSNLDCCDLFSHLL*SPSLLF
Trigger: AAACAACAGACTTGGTGACCAAAGAAGATGAGAAAA...TAAGTCACAACAATCAAGATTGGAAGAAGAGGTTGCTCCGGGATCCCCTTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCTCCGTAATAAGTGATTaGAGCCAGAAAGCATCATCC +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPSVISD*SQKASS
Trigger: GGATGATGCTTTCTGGCTTCAATCACTTATTACGGA...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp CTTTATCTTCTCCGTTTCTGTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCTATATAAAAAGTaGCACTCTGACTTCCTAGGT +
Preference number: 4 (lower is better)
Translates to: LYLLRFCYAEIHHRFLRKCLYKK*HSDFLG
Trigger: ACCTAGGAAGTCAGAGTGTCACTTTTTATATAGACA...CTTCCGAAGGAAGCGGTGATGAATTTCAGCATAACAGAAACGGAGAAGATAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000487561.2
CDS-3UTR GCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCGGTTTTCTCATCTCATaGTCATCAGCAAAAGCAGCA +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPGFLIS*SSAKAA
Trigger: TGCTGCTTTTGCTGATGAGCATGAGATGAGAAAACC...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000283141.11
CDS-3UTR CCA 90 bp ATGGCAGAACCGTTCAAGTTCTCTGGCACAACTTCTAGGGATGAAGTGGAAATTTCCAAGATAGTTCACTaGTACTTGAATCTTGATTAC +
Preference number: 4 (lower is better)
Translates to: MAEPFKFSGTTSRDEVEISKIVH*YLNLDY
Trigger: GTAATCAAGATTCAAGTACCAGTGAACTATCTTGGA...AATTTCCACTTCATCCCTAGAAGTTGTGCCAGAGAACTTGAACGGTTCTGCCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp GGGCTTCTTCAGGTAAATGATAAATATCTTTATCTTCTCCGTTTCTGTTATGCTCCGTTTCTGTTATGCTaGAATTCATCACCGCTTCCT +
Preference number: 4 (lower is better)
Translates to: GLLQVNDKYLYLLRFCYAPFLLC*NSSPLP
Trigger: AGGAAGCGGTGATGAATTTCAGCATAACAGAAACGG...AGCATAACAGAAACGGAGAAGATAAAGATATTTATCATTTACCTGAAGAAGCCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487561.2
CDS-3UTR TCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCCTTACTAAAAAGTTCTaGGGAGATTTTCGTCTGGTC +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPLTKKF*GDFRLV
Trigger: GACCAGACGAAAATCTCCTCAGAACTTTTTAGTAAG...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCCTGGTACTTGAATCTTaGTTACTCTCAGAGAAGAGA +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPLVLES*LLSEKR
Trigger: TCTCTTCTCTGAGAGTAATCAAGATTCAAGTACCAG...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCCTTTCTTATGAAGTCTaGGTTGAATTGAACCTCAGC +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPLSYEV*VELNLS
Trigger: GCTGAGGTTCAATTCAACTCAGACTTCATAAGAAAG...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR TCA 90 bp ATGGATTTCTATTTTCATGACTTCTTTGTAGCTGATAATCATGGGCTTCTTCAGTCTACGAGGAATCGCTaGATACATTTCAGCAACAGT +
Preference number: 4 (lower is better)
Translates to: MDFYFHDFFVADNHGLLQSTRNR*IHFSNS
Trigger: ACTGTTGCTGAAATGTATTCAGCGATTCCTCGTAGA...CTGAAGAAGCCCATGATTATCAGCTACAAAGAAGTCATGAAAATAGAAATCCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp GCTGATAATCATGGGCTTCTTCAGGTAAATGATAAATATCTTTATCTTCTCCGTGAAAGTCTGTTATGCTaGAATTCATCACCGCTTCCT +
Preference number: 4 (lower is better)
Translates to: ADNHGLLQVNDKYLYLLRESLLC*NSSPLP
Trigger: AGGAAGCGGTGATGAATTTCAGCATAACAGACTTTC...ACGGAGAAGATAAAGATATTTATCATTTACCTGAAGAAGCCCATGATTATCAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR GCA 90 bp ATCTTTATCTTCTCCGTTTCTGTTATGCTGAAATTCATCACCGCTTCCTTCGGACCTGGAAATAATCAATaGAGTGTCAAAGAAATCTTC +
Preference number: 4 (lower is better)
Translates to: IFIFSVSVMLKFITASFGPGNNQ*SVKEIF
Trigger: GAAGATTTCTTTGACACTGCATTGATTATTTCCAGG...TCCGAAGGAAGCGGTGATGAATTTCAGCATAACAGAAACGGAGAAGATAAAGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487561.2
CDS-3UTR GCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCGATGTGGTGTTATTTTaGTCGGGTATTTCTTTCTCT +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPDVVLF*SGISFS
Trigger: AGAGAAAGAAATACCCGAGCAAAATAACACCACATC...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
3UTR CAA 72 bp TTTTCTGGTTACTGGTCCAAGATAGTTCACTGGTACTaGAATCTTGATTACTCTCAGAGAAGAGATGTTTTC +
Preference number: 4 (lower is better)
Translates to: FSGYWSKIVHWY*NLDYSQRRDVF
Trigger: GAAAACATCTCTTCTCTGAGAGTAATCAAGATTCAAGTACCAGTGAACTATCTTGGACCAGTAACCAGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR TCA 90 bp GCTGATAATCATGGGCTTCTTCAGGTAAATGATAAATATCTTTATCTTCTCCGTAGGTCTTTCATAAGATaGCACATGCCTTCTGACAAA +
Preference number: 4 (lower is better)
Translates to: ADNHGLLQVNDKYLYLLRRSFIR*HMPSDK
Trigger: TTTGTCAGAAGGCATGTGTCATCTTATGAAAGACCT...ACGGAGAAGATAAAGATATTTATCATTTACCTGAAGAAGCCCATGATTATCAGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCTCATCAAACCATTTATaGACAAGTTCATCCCTTGAT +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPSSNHL*TSSSLD
Trigger: ATCAAGGGATGAACTTGTCCATAAATGGTTTGATGA...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCTCCAAGATAGTTCACTaGTACTTGAATCTTGATTAC +
Preference number: 4 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPSKIVH*YLNLDY
Trigger: GTAATCAAGATTCAAGTACCAGTGAACTATCTTGGA...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CCA 90 bp GCTGATAATCATGGGCTTCTTCAGGTAAATGATAAATATCTTTATCTTCTCCGTAGTGGAAATTCCTTCTaGCAACTCTCTTTCTTCTGT +
Preference number: 4 (lower is better)
Translates to: ADNHGLLQVNDKYLYLLRSGNSF*QLSFFC
Trigger: ACAGAAGAAAGAGAGTTGCCAGAAGGAATTTCCACT...ACGGAGAAGATAAAGATATTTATCATTTACCTGAAGAAGCCCATGATTATCAGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CCA 90 bp TCTTCTTCCAATCTTGATTGTTGTGACTTAGCAAAACTACCTTCTGGTATGTCTTCATCAAACCATTTATaGACAAGTTCATCCCTTGAT +
Preference number: 4 (lower is better)
Translates to: SSSNLDCCDLAKLPSGMSSSNHL*TSSSLD
Trigger: ATCAAGGGATGAACTTGTCCATAAATGGTTTGATGA...AGACATACCAGAAGGTAGTTTTGCTAAGTCACAACAATCAAGATTGGAAGAAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS CCA 90 bp CCCGCCCAAGAGCCCCGCCCGCTGGGGGCGCTGCCGAAAGAGCCCTaGTGGCGGACCGCTCTTCGAGTCGAGTCTTCTTCCGCAACTGTA +
Preference number: 5 (lower is better)
Translates to: PAQEPRPLGALPKEP*WRTALRVESSSATV
Trigger: TACAGTTGCGGAAGAAGACTCGACTCGAAGAGCGGTCCGCCACCAGGGCTCTTTCGGCAGCGCCCCCAGCGGGCGGGGCTCTTGGGCGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS GCA 90 bp AACGAGGCTTCTTCGTTCCTGAAGCGACGCGCCGCTCAGCTTTGTTaGGCTCGGTCGGCCCTCTCCTGCTTCCCCGCCCAAGAGCCCCGC +
Preference number: 5 (lower is better)
Translates to: NEASSFLKRRAAQLC*ARSALSCFPAQEPR
Trigger: GCGGGGCTCTTGGGCGGGGAAGCAGGAGAGGGCCGACCGAGCGCAACAAAGCTGAGCGGCGCGTCGCTTCAGGAACGAAGAAGCCTCGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS CCA 90 bp GCCCAAGAGCCCCGCCCGCTGGGGGCGCTGCCGAAAGAGCCCTGGTaGCGGACCGCTCTTCGAGTCGAGTCTTCTTCCGCAACTGTAATT +
Preference number: 5 (lower is better)
Translates to: AQEPRPLGALPKEPW*RTALRVESSSATVI
Trigger: AATTACAGTTGCGGAAGAAGACTCGACTCGAAGAGCGGTCCGCCACCAGGGCTCTTTCGGCAGCGCCCCCAGCGGGCGGGGCTCTTGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTACGCGCCGCTCAGCTTaGTTGCGCTCGGTCGGCCCT +
Preference number: 5 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFTRRSA*LRSVGP
Trigger: AGGGCCGACCGAGCGCAACAAAGCTGAGCGGCGCGT...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS TCA 90 bp AAAGCATCTTTGTTTTTCGCTTGCATAACGAGGCTTCTTCGTTCCTaGAGCGACGCGCCGCTCAGCTTTGTTGCGCTCGGTCGGCCCTCT +
Preference number: 5 (lower is better)
Translates to: KASLFFACITRLLRS*SDAPLSFVALGRPS
Trigger: AGAGGGCCGACCGAGCGCAACAAAGCTGAGCGGCGCGTCGCTTCAGGAACGAAGAAGCCTCGTTATGCAAGCGAAAAACAAAGATGCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp ATGGCAGAACCGTTCAAGTTCTCTGGCACAACTTCTAGGGATGAAGTGGAAATTCGCCGCTCAGCTTTGTaGCGCTCGGTCGGCCCTCTC +
Preference number: 5 (lower is better)
Translates to: MAEPFKFSGTTSRDEVEIRRSAL*RSVGPL
Trigger: GAGAGGGCCGACCGAGCGCAACAAAGCTGAGCGGCG...AATTTCCACTTCATCCCTAGAAGTTGTGCCAGAGAACTTGAACGGTTCTGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAACGCGCCGCTCAGCTTaGTTGCGCTCGGTCGGCCCT +
Preference number: 5 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGTRRSA*LRSVGP
Trigger: AGGGCCGACCGAGCGCAACAAAGCTGAGCGGCGCGT...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTATGAGACTTAGGTTGTaGCGGGAAGTCAGGGACCCC +
Preference number: 5 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFMRLRL*REVRDP
Trigger: GGGGTCCCTGACTTCCCGCAACAACCTAAGTCTCAT...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp GAAGTCAGGGACCCCGAACGGAGGGACCGGCTGAAGGTGACTATCAGAGGCAGGGTTTTCTCATCTTCTTaGGTCACCAAGTCTGTTGTT +
Preference number: 5 (lower is better)
Translates to: EVRDPERRDRLKVTIRGRVFSSS*VTKSVV
Trigger: AACAACAGACTTGGTGACCAAAGAAGATGAGAAAAC...CCTGCCTCTGATAGTCACCTTCAGCCGGTCCCTCCGTTCGGGGTCCCTGACTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS TCA 90 bp GTGGCGGACCGCTCTTCGAGTCGAGTCTTCTTCCGCAACTGTAATTaGCGAATCCGCCCCCTGAAGTTTACTAGAGCTCTGTGTTTTGAG +
Preference number: 5 (lower is better)
Translates to: VADRSSSRVFFRNCN*RIRPLKFTRALCFE
Trigger: CTCAAAACACAGAGCTCTAGTAAACTTCAGGGGGCGGATTCGTCAATTACAGTTGCGGAAGAAGACTCGACTCGAAGAGCGGTCCGCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCCGCCGCTCAGCTTTGTaGCGCTCGGTCGGCCCTCTC +
Preference number: 5 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPRRSAL*RSVGPL
Trigger: GAGAGGGCCGACCGAGCGCAACAAAGCTGAGCGGCG...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTGGCTGCAAAGCATCTTaGTTTTTCGCTTGCATAACG +
Preference number: 5 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFGCKAS*FFACIT
Trigger: CGTTATGCAAGCGAAAAACAAAGATGCTTTGCAGCC...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp GTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAATGAGACTTAGGTTGTaGCGGGAAGTCAGGGACCCC +
Preference number: 5 (lower is better)
Translates to: VMLKFITASFGSVTESHRMRLRL*REVRDP
Trigger: GGGGTCCCTGACTTCCCGCAACAACCTAAGTCTCAT...TCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCGTAATGAGACTTAGGTaGTTGCGGGAAGTCAGGGAC +
Preference number: 5 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLVMRLR*LREVRD
Trigger: GTCCCTGACTTCCCGCAACAACCTAAGTCTCATTAC...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp CCTTCTGGCAACTCTCTTTCTTCTGTTATTGAGAAAGGGGATCCCGGAGCAACCTTGGAGGGGAGGAAATaGAATGCGTACAGAGCACGA +
Preference number: 5 (lower is better)
Translates to: PSGNSLSSVIEKGDPGATLEGRK*NAYRAR
Trigger: TCGTGCTCTGTACGCATTCAATTTCCTCCCCTCCAA...GGTTGCTCCGGGATCCCCTTTCTCAATAACAGAAGAAAGAGAGTTGCCAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTATCTTTGTTTTTCGCTaGCATAACGAGGCTTCTTCG +
Preference number: 5 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFIFVFR*HNEASS
Trigger: CGAAGAAGCCTCGTTATGCAAGCGAAAAACAAAGAT...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTAAGCGCTCTAGTTTATaGAGTCTGAACAGTTGCATC +
Preference number: 5 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFKRSSL*SLNSCI
Trigger: GATGCAACTGTTCAGACTCAATAAACTAGAGCGCTT...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTCAGATCACAGAAAGATaGCAGATCAGCAGACTGTTT +
Preference number: 5 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFQITER*QISRLF
Trigger: AAACAGTCTGCTGATCTGCAATCTTTCTGTGATCTG...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGATTGAACCTCAGCACTaGCAGATCACAGAAAGATTG +
Preference number: 5 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLIEPQH*QITERL
Trigger: CAATCTTTCTGTGATCTGCAAGTGCTGAGGTTCAAT...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGAACCAGGAAACTAGCTTaGGGATCAGTCCCTGCCGAA +
Preference number: 5 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGTRKLA*GSVPAE
Trigger: TTCGGCAGGGACTGATCCCAAAGCTAGTTTCCTGGT...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGAGATGTGGTGTTATTTaGCTCGGGTATTTCTTTCTC +
Preference number: 5 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLRCGVI*LGYFFL
Trigger: GAGAAAGAAATACCCGAGCAAAATAACACCACATCT...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp GTCTTCAGGCAGCCCAGGCTGAGGGCTGCAATCATAAAACCAGGCTTTGGCTTTCAACACCACTCCAAGTaGTTTAACATCCTGAACTTT +
Preference number: 5 (lower is better)
Translates to: VFRQPRLRAAIIKPGFGFQHHSK*FNILNF
Trigger: AAAGTTCAGGATGTTAAACAACTTGGAGTGGTGTTG...AAAGCCAAAGCCTGGTTTTATGATTGCAGCCCTCAGCCTGGGCTGCCTGAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000283141.11
CDS-3UTR CAA 90 bp CCTGAGCCAACAATAACCTTGCTCTTTCTCTTCGTCTTCAGGCAGCCCAGGCTGCCCAAAATACTAATCTaGCCGGACATTTTACTCATC +
Preference number: 5 (lower is better)
Translates to: PEPTITLLFLFVFRQPRLPKILI*PDILLI
Trigger: GATGAGTAAAATGTCCGGCAAGATTAGTATTTTGGG...CAGCCTGGGCTGCCTGAAGACGAAGAGAAAGAGCAAGGTTATTGTTGGCTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGATTGGAGGGGAGGAAATaGAATGCGTACAGAGCACGA +
Preference number: 5 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGLEGRK*NAYRAR
Trigger: TCGTGCTCTGTACGCATTCAATTTCCTCCCCTCCAA...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp GTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAGGCTGCAAAGCATCTTaGTTTTTCGCTTGCATAACG +
Preference number: 5 (lower is better)
Translates to: VMLKFITASFGSVTESHRGCKAS*FFACIT
Trigger: CGTTATGCAAGCGAAAAACAAAGATGCTTTGCAGCC...TCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp GAGAAAGGGGATCCCGGAGCAACCTCTTCTTCCAATCTTGATTGTTGTGACTTACCTTCTGGTATGTCTTaGTCTTCCAAGTTTCTCAGC +
Preference number: 5 (lower is better)
Translates to: EKGDPGATSSSNLDCCDLPSGMS*SSKFLS
Trigger: GCTGAGAAACTTGGAAGACAAAGACATACCAGAAGG...TAAGTCACAACAATCAAGATTGGAAGAAGAGGTTGCTCCGGGATCCCCTTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp GAGCACGAAGTCTGGCTAACAAGGCCTGAGCCAACAATAACCTTGCTCTTTCTCATAGTTCACTGGTACTaGAATCTTGATTACTCTCAG +
Preference number: 5 (lower is better)
Translates to: EHEVWLTRPEPTITLLFLIVHWY*NLDYSQ
Trigger: CTGAGAGTAATCAAGATTCAAGTACCAGTGAACTAT...GAGAAAGAGCAAGGTTATTGTTGGCTCAGGCCTTGTTAGCCAGACTTCGTGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp GTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGTGTCACTGAGTCCCATAGAATTGAACCTCAGCACTaGCAGATCACAGAAAGATTG +
Preference number: 5 (lower is better)
Translates to: VMLKFITASFGSVTESHRIEPQH*QITERL
Trigger: CAATCTTTCTGTGATCTGCAAGTGCTGAGGTTCAAT...TCTATGGGACTCAGTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp CAACATATATTCTATCTGAACTCAGCAGTTCCCAGGGATGATGTTTGGAGGGGACTTCAAGCCCTCCTGTaGAAGCAAATGATTTACAGT +
Preference number: 5 (lower is better)
Translates to: QHIFYLNSAVPRDDVWRGLQALL*KQMIYS
Trigger: ACTGTAAATCATTTGCTTCAACAGGAGGGCTTGAAG...TCCCCTCCAAACATCATCCCTGGGAACTGCTGAGTTCAGATAGAATATATGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp ATGGCAGAACCGTTCAAGTTCTCTGGCACAACTTCTAGGGATGAAGTGGAAATTCAGATCACAGAAAGATaGCAGATCAGCAGACTGTTT +
Preference number: 5 (lower is better)
Translates to: MAEPFKFSGTTSRDEVEIQITER*QISRLF
Trigger: AAACAGTCTGCTGATCTGCAATCTTTCTGTGATCTG...AATTTCCACTTCATCCCTAGAAGTTGTGCCAGAGAACTTGAACGGTTCTGCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCCTAGAGCTCTGTGTTTaGAGACTCAAGAAGCGCGTG +
Preference number: 5 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPLELCV*RLKKRV
Trigger: CACGCGCTTCTTGAGTCTCAAAACACAGAGCTCTAG...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp ATGGATTTCTATTTTCATGACTTCTTTGTAGCTGATAATCATGGGCTTCTTCAGACCAGGAAACTAGCTTaGGGATCAGTCCCTGCCGAA +
Preference number: 5 (lower is better)
Translates to: MDFYFHDFFVADNHGLLQTRKLA*GSVPAE
Trigger: TTCGGCAGGGACTGATCCCAAAGCTAGTTTCCTGGT...CTGAAGAAGCCCATGATTATCAGCTACAAAGAAGTCATGAAAATAGAAATCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp ATGGCAGAACCGTTCAAGTTCTCTGGCACAACTTCTAGGGATGAAGTGGAAATTAGGTCAGAATTCCTGTaGTTCTTTCAAACCAGGAAA +
Preference number: 5 (lower is better)
Translates to: MAEPFKFSGTTSRDEVEIRSEFL*FFQTRK
Trigger: TTTCCTGGTTTGAAAGAACAACAGGAATTCTGACCT...AATTTCCACTTCATCCCTAGAAGTTGTGCCAGAGAACTTGAACGGTTCTGCCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp TGCCGGACATTTTACTCATCACTCCAGGGAAAGTCTGTTATGCTGAAATTCATCCTTCAAGCCCTCCTGTaGAAGCAAATGATTTACAGT +
Preference number: 5 (lower is better)
Translates to: CRTFYSSLQGKSVMLKFILQALL*KQMIYS
Trigger: ACTGTAAATCATTTGCTTCAACAGGAGGGCTTGAAG...GATGAATTTCAGCATAACAGACTTTCCCTGGAGTGATGAGTAAAATGTCCGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp CTTTATCTTCTCCGTTTCTGTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGCTTCAAGCCCTCCTGTaGAAGCAAATGATTTACAGT +
Preference number: 5 (lower is better)
Translates to: LYLLRFCYAEIHHRFLRKLQALL*KQMIYS
Trigger: ACTGTAAATCATTTGCTTCAACAGGAGGGCTTGAAG...CTTCCGAAGGAAGCGGTGATGAATTTCAGCATAACAGAAACGGAGAAGATAAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487561.2
CDS TCA 90 bp GGAAATGAATACACCCTTCTTTGGTCACCAAGTCTGTTGTTTAGGTaGTTGAGAAAACGTCTACTGTCCGTCTCAAATTCTCGATCCTTA +
Preference number: 5 (lower is better)
Translates to: GNEYTLLWSPSLLFR*LRKRLLSVSNSRSL
Trigger: TAAGGATCGAGAATTTGAGACGGACAGTAGACGTTTTCTCAATCACCTAAACAACAGACTTGGTGACCAAAGAAGGGTGTATTCATTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000543878.5
CDS-3UTR CAA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCCCTTCTGGTATGTCTTaGTCTTCCAAGTTTCTCAGC +
Preference number: 5 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPPSGMS*SSKFLS
Trigger: GCTGAGAAACTTGGAAGACAAAGACATACCAGAAGG...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp ATCTTTATCTTCTCCGTTTCTGTTATGCTGAAATTCATCACCGCTTCCTTCGGAAGGTCAGAATTCCTGTaGTTCTTTCAAACCAGGAAA +
Preference number: 5 (lower is better)
Translates to: IFIFSVSVMLKFITASFGRSEFL*FFQTRK
Trigger: TTTCCTGGTTTGAAAGAACAACAGGAATTCTGACCT...TCCGAAGGAAGCGGTGATGAATTTCAGCATAACAGAAACGGAGAAGATAAAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487561.2
CDS-3UTR CAA 90 bp AATAACCCAACTGCAAACTACCAACATATATTCTATCTGAACTCAGCAGTTCCCAGGTCAGAATTCCTGTaGTTCTTTCAAACCAGGAAA +
Preference number: 5 (lower is better)
Translates to: NNPTANYQHIFYLNSAVPRSEFL*FFQTRK
Trigger: TTTCCTGGTTTGAAAGAACAACAGGAATTCTGACCT...GGGAACTGCTGAGTTCAGATAGAATATATGTTGGTAGTTTGCAGTTGGGTTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS-3UTR CAA 90 bp GCTGATAATCATGGGCTTCTTCAGGTAAATGATAAATATCTTTATCTTCTCCGTAAGCGCTCTAGTTTATaGAGTCTGAACAGTTGCATC +
Preference number: 5 (lower is better)
Translates to: ADNHGLLQVNDKYLYLLRKRSSL*SLNSCI
Trigger: GATGCAACTGTTCAGACTCAATAAACTAGAGCGCTT...ACGGAGAAGATAAAGATATTTATCATTTACCTGAAGAAGCCCATGATTATCAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp ATGGATTTCTATTTTCATGACTTCTTTGTAGCTGATAATCATGGGCTTCTTCAGAGATGTGGTGTTATTTaGCTCGGGTATTTCTTTCTC +
Preference number: 5 (lower is better)
Translates to: MDFYFHDFFVADNHGLLQRCGVI*LGYFFL
Trigger: GAGAAAGAAATACCCGAGCAAAATAACACCACATCT...CTGAAGAAGCCCATGATTATCAGCTACAAAGAAGTCATGAAAATAGAAATCCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS-3UTR CAA 90 bp ATGGATTTCTATTTTCATGACTTCTTTGTAGCTGATAATCATGGGCTTCTTCAGATAGTTCACTGGTACTaGAATCTTGATTACTCTCAG +
Preference number: 5 (lower is better)
Translates to: MDFYFHDFFVADNHGLLQIVHWY*NLDYSQ
Trigger: CTGAGAGTAATCAAGATTCAAGTACCAGTGAACTAT...CTGAAGAAGCCCATGATTATCAGCTACAAAGAAGTCATGAAAATAGAAATCCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS CCA 72 bp CCCCGCCCGCTGGGGGCGCTGCCGAAAGAGCCCTGGTaGCGGACCGCTCTTCGAGTCGAGTCTTCTTCCGCA +
Preference number: 6 (lower is better)
Translates to: PRPLGALPKEPW*RTALRVESSSA
Trigger: TGCGGAAGAAGACTCGACTCGAAGAGCGGTCCGCCACCAGGGCTCTTTCGGCAGCGCCCCCAGCGGGCGGGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS CCA 72 bp GAGCCCCGCCCGCTGGGGGCGCTGCCGAAAGAGCCCTaGTGGCGGACCGCTCTTCGAGTCGAGTCTTCTTCC +
Preference number: 6 (lower is better)
Translates to: EPRPLGALPKEP*WRTALRVESSS
Trigger: GGAAGAAGACTCGACTCGAAGAGCGGTCCGCCACCAGGGCTCTTTCGGCAGCGCCCCCAGCGGGCGGGGCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS CAA 72 bp GGCTTCTTCGTTCCTGAAGCGACGCGCCGCTCAGCTTaGTTGCGCTCGGTCGGCCCTCTCCTGCTTCCCCGC +
Preference number: 6 (lower is better)
Translates to: GFFVPEATRRSA*LRSVGPLLLPR
Trigger: GCGGGGAAGCAGGAGAGGGCCGACCGAGCGCAACAAAGCTGAGCGGCGCGTCGCTTCAGGAACGAAGAAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS GCA 72 bp TCTTCGTTCCTGAAGCGACGCGCCGCTCAGCTTTGTTaGGCTCGGTCGGCCCTCTCCTGCTTCCCCGCCCAA +
Preference number: 6 (lower is better)
Translates to: SSFLKRRAAQLC*ARSALSCFPAQ
Trigger: TTGGGCGGGGAAGCAGGAGAGGGCCGACCGAGCGCAACAAAGCTGAGCGGCGCGTCGCTTCAGGAACGAAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS CAA 72 bp TTCTTCGTTCCTGAAGCGACGCGCCGCTCAGCTTTGTaGCGCTCGGTCGGCCCTCTCCTGCTTCCCCGCCCA +
Preference number: 6 (lower is better)
Translates to: FFVPEATRRSAL*RSVGPLLLPRP
Trigger: TGGGCGGGGAAGCAGGAGAGGGCCGACCGAGCGCAACAAAGCTGAGCGGCGCGTCGCTTCAGGAACGAAGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS TCA 72 bp TTGTTTTTCGCTTGCATAACGAGGCTTCTTCGTTCCTaGAGCGACGCGCCGCTCAGCTTTGTTGCGCTCGGT +
Preference number: 6 (lower is better)
Translates to: LFFACITRLLRS*SDAPLSFVALG
Trigger: ACCGAGCGCAACAAAGCTGAGCGGCGCGTCGCTTCAGGAACGAAGAAGCCTCGTTATGCAAGCGAAAAACAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000341041.8
CDS TCA 72 bp CGCTCTTCGAGTCGAGTCTTCTTCCGCAACTGTAATTaGCGAATCCGCCCCCTGAAGTTTACTAGAGCTCTG +
Preference number: 6 (lower is better)
Translates to: RSSSRVFFRNCN*RIRPLKFTRAL
Trigger: CAGAGCTCTAGTAAACTTCAGGGGGCGGATTCGTCAATTACAGTTGCGGAAGAAGACTCGACTCGAAGAGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS GCA 72 bp CTTTCAAACCAGGAAACTAGCTTTGGGATCAGTCCCTaGCGAATTAGCAGAGGTTCATCTTCTTTCAGGCCA +
Preference number: 6 (lower is better)
Translates to: LSNQETSFGISP*RISRGSSSFRP
Trigger: TGGCCTGAAAGAAGATGAACCTCTGCTAATTCGGCAGGGACTGATCCCAAAGCTAGTTTCCTGGTTTGAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000283141.11
ENST00000341041.8
ENST00000543878.5
CDS CAA 72 bp TGTCTGAGGCTAGGCCTTCCGAGGTCAGAATTCCTGTaGTTCTTTCAAACCAGGAAACTAGCTTTGGGATCA +
Preference number: 6 (lower is better)
Translates to: CLRLGLPRSEFL*FFQTRKLALGS
Trigger: TGATCCCAAAGCTAGTTTCCTGGTTTGAAAGAACAACAGGAATTCTGACCTCGGAAGGCCTAGCCTCAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000283141.11
ENST00000341041.8
ENST00000543878.5
CDS TCA 72 bp TCTTCTTCCGCAACTGTAATTGACGAATCCGCCCCCTaGAGTTTACTAGAGCTCTGTGTTTTGAGACTCAAG +
Preference number: 6 (lower is better)
Translates to: SSSATVIDESAP*SLLELCVLRLK
Trigger: CTTGAGTCTCAAAACACAGAGCTCTAGTAAACTTCAGGGGGCGGATTCGTCAATTACAGTTGCGGAAGAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000341041.8
CDS TCA 72 bp TACACCCTTCTTTGGTCACCAAGTCTGTTGTTTAGGTaGTTGAGAAAACGTCTACTGTCCGTCTCAAATTCT +
Preference number: 6 (lower is better)
Translates to: YTLLWSPSLLFR*LRKRLLSVSNS
Trigger: AGAATTTGAGACGGACAGTAGACGTTTTCTCAATCACCTAAACAACAGACTTGGTGACCAAAGAAGGGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000283141.11
ENST00000543878.5
CDS TCA 72 bp TCTCATCTTCTTTGGTCACCAAGTCTGTTGTTTAGGTaGTTGAGAAAACGTCTACTGTCCGTCTCAAATTCT +
Preference number: 6 (lower is better)
Translates to: SHLLWSPSLLFR*LRKRLLSVSNS
Trigger: AGAATTTGAGACGGACAGTAGACGTTTTCTCAATCACCTAAACAACAGACTTGGTGACCAAAGAAGATGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000341041.8