Pregenerated sensors for SUPT4H1 (Homo sapiens)
Ensembl gene IDs: ENSG00000213246Ensembl transcript IDs: ENST00000225504.8, ENST00000577396.5, ENST00000581540.5
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAAGGGAAGGCACAGACCTaGGCCACGGGTAGGAAAATC | + |
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Preference number: 2 (lower is better) Translates to: LRYRKSREEKKIDKQGREGKAQT*ATGRKI Trigger: GATTTTCCTACCCGTGGCCCAGGTCTGTGCCTTCCC...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| 3UTR-3UTR CCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAACTAGAGTCCTTGGCATaGGGAAGGCACAGACCTGGG | + |
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Preference number: 2 (lower is better) Translates to: LRYRKSREEKKIDKQGRELESLA*GRHRPG Trigger: CCCAGGTCTGTGCCTTCCCCATGCCAAGGACTCTAG...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| 3UTR-3UTR GCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAAAATAAGCTATTACTGTaGCTAAGAGAATGGAAGAGG | + |
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Preference number: 2 (lower is better) Translates to: LRYRKSREEKKIDKQGRENKLLL*LREWKR Trigger: CCTCTTCCATTCTCTTAGGCACAGTAATAGCTTATT...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| 3UTR TCA 72 bp | TTTCACATAGCTTCGTTTCTACAATCACAACAATCCTaGGGTAAACAGGCAGGGTGCAATCATTCTCTTTTT | + |
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Preference number: 3 (lower is better) Translates to: FHIASFLQSQQS*GKQAGCNHSLF Trigger: AAAAAGAGAATGATTGCACCCTGCCTGTTTACCTCAGGATTGTTGTGATTGTAGAAACGAAGCTATGTGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000225504.8 |
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| CDS-3UTR CCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAAGCGGCGGAGGCTGTGTaGGGTAGTCAGCGGGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: LRYRKSREEKKIDKQGREAAEAV*GSQRAP Trigger: GGGGGCCCGCTGACTACCCCACACAGCCTCCGCCGC...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577396.5 |
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| CDS-3UTR CCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAACCCCGCCAGAGGAGATaGTTTCTCCCGCCAGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LRYRKSREEKKIDKQGREPRQRR*FLPPAG Trigger: GCCTGCTGGCGGGAGAAACCATCTCCTCTGGCGGGG...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000577396.5 |
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| CDS-3UTR GCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAAAAACAGGCCCGCAGATaGCGCAGGTCCTTCGGCACC | + |
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Preference number: 4 (lower is better) Translates to: LRYRKSREEKKIDKQGREKQARR*RRSFGT Trigger: GGTGCCGAAGGACCTGCGGCATCTGCGGGCCTGTTT...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| CDS-3UTR TCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAACCCAAGGGTCTCCAGTaGGTGCTTGAGACTGGCCTA | + |
|
Preference number: 4 (lower is better) Translates to: LRYRKSREEKKIDKQGREPKGLQ*VLETGL Trigger: TAGGCCAGTCTCAAGCACTCACTGGAGACCCTTGGG...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| CDS-3UTR GCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAAGCTCGTTACCCAGAATaGCCACCACTTCCGGCGCTT | + |
|
Preference number: 4 (lower is better) Translates to: LRYRKSREEKKIDKQGREARYPE*PPLPAL Trigger: AAGCGCCGGAAGTGGTGGGCATTCTGGGTAACGAGC...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577396.5 |
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| CDS-3UTR CCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAAGGCCATCTTCGCCGATaGGAAGAACAACAGGGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: LRYRKSREEKKIDKQGREGHLRR*EEQQGD Trigger: ATCTCCCTGTTGTTCTTCCCATCGGCGAAGATGGCC...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| CDS-3UTR TCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAATGGTCTATAGTACCTTaGCCAGCGAACACAGCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: LRYRKSREEKKIDKQGREWSIVP*PANTAN Trigger: GTTTGCTGTGTTCGCTGGTCAAGGTACTATAGACCA...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577396.5 |
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| CDS-3UTR GCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAAAGATGCTGGCAGCCTTaGATCTTGCTAGGTCTTTAT | + |
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Preference number: 4 (lower is better) Translates to: LRYRKSREEKKIDKQGRERCWQP*ILLGLY Trigger: ATAAAGACCTAGCAAGATGCAAGGCTGCCAGCATCT...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| CDS-3UTR GCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAAGGTAAACAGGCAGGGTaGAATCATTCTCTTTTTAGA | + |
|
Preference number: 4 (lower is better) Translates to: LRYRKSREEKKIDKQGREGKQAG*NHSLFR Trigger: TCTAAAAAGAGAATGATTGCACCCTGCCTGTTTACC...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| CDS-3UTR CCA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAATTAGGGAAATCAAAATaGGGATACGAACAGGATTTC | + |
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Preference number: 4 (lower is better) Translates to: LRYRKSREEKKIDKQGRELGKSK*GYEQDF Trigger: GAAATCCTGTTCGTATCCCCATTTTGATTTCCCTAA...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| CDS-3UTR CAA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAACTCCCGCACGATTCCTaGGGGCAGGCGACCAGTGAC | + |
|
Preference number: 5 (lower is better) Translates to: LRYRKSREEKKIDKQGRELPHDS*GQATSD Trigger: GTCACTGGTCGCCTGCCCCAAGGAATCGTGCGGGAG...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| CDS-3UTR CAA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAATGGCAGCCTTGCATCTaGCTAGGTCTTTATAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: LRYRKSREEKKIDKQGREWQPCI*LGLYSC Trigger: ACAGCTATAAAGACCTAGCAAGATGCAAGGCTGCCA...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| CDS-3UTR CAA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAAAAGATGCTGGCAGCCTaGCATCTTGCTAGGTCTTTA | + |
|
Preference number: 5 (lower is better) Translates to: LRYRKSREEKKIDKQGREKMLAA*HLARSL Trigger: TAAAGACCTAGCAAGATGCAAGGCTGCCAGCATCTT...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000225504.8 ENST00000577396.5 |
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| CDS-3UTR CAA 90 bp | CTAAGGTATAGGAAGAGCCGTGAAGAGAAGAAAATAGACAAGCAGGGGAGGGAACTGGTCTATAGTACCTaGACCAGCGAACACAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: LRYRKSREEKKIDKQGRELVYST*TSEHSK Trigger: TTTGCTGTGTTCGCTGGTCAAGGTACTATAGACCAG...TTCCCTCCCCTGCTTGTCTATTTTCTTCTCTTCACGGCTCTTCCTATACCTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577396.5 |
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| CDS GCA 90 bp | ATGAACAAGACCAAGAGAAAAAGTAGCTTTCTCAATACTTCGACCTaGTCAATTTCTTGTTTCCCTATGTTGACTGTGTATCCTAAGGTT | + |
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Preference number: 5 (lower is better) Translates to: MNKTKRKSSFLNTST*SISCFPMLTVYPKV Trigger: AACCTTAGGATACACAGTCAACATAGGGAAACAAGAAATTGAGCAGGTCGAAGTATTGAGAAAGCTACTTTTTCTCTTGGTCTTGTTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000581540.5 |
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| CDS CCA 72 bp | GAGGAGATGGTTTCTCCCGCCAGCAGGCGGGGAGGCTaGGCGGCCGGCCGCCACCTGGGCCGGAGCGCGTCG | + |
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Preference number: 6 (lower is better) Translates to: EEMVSPASRRGG*AAGRHLGRSAS Trigger: CGACGCGCTCCGGCCCAGGTGGCGGCCGGCCGCCCAGCCTCCCCGCCTGCTGGCGGGAGAAACCATCTCCTC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000577396.5 |
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| CDS GCA 72 bp | ACCAAGAGAAAAAGTAGCTTTCTCAATACTTCGACCTaGTCAATTTCTTGTTTCCCTATGTTGACTGTGTAT | + |
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Preference number: 6 (lower is better) Translates to: TKRKSSFLNTST*SISCFPMLTVY Trigger: ATACACAGTCAACATAGGGAAACAAGAAATTGAGCAGGTCGAAGTATTGAGAAAGCTACTTTTTCTCTTGGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000581540.5 |
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