Pregenerated sensors for SUPT16H (Homo sapiens)
Ensembl gene IDs: ENSG00000092201Ensembl transcript IDs: ENST00000555752.1, ENST00000555943.1, ENST00000556217.5, ENST00000557652.1
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGAGAACACGGCAGGAGGGCAGCAAGACGTaGCCACGGAGTAGGAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: GWNIVVLEGQSECVRTRQEGSKT*PRSRRE Trigger: TTCCCTCCTACTCCGTGGTCACGTCTTGCTGCCCTC...CTGCCGTGTTCTCACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| 3UTR-3UTR CCA 90 bp | CACAGCTCTTTTAATGAACACGTGCCCCGGATACGCTACCAAGGAACTAATAAGGGAATATTGTGGTTCTaGAGGGACAGAGCGAGTGCG | + |
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Preference number: 2 (lower is better) Translates to: HSSFNEHVPRIRYQGTNKGILWF*RDRASA Trigger: CGCACTCGCTCTGTCCCTCCAGAACCACAATATTCC...CTTATTAGTTCCTTGGTAGCGTATCCGGGGCACGTGTTCATTAAAAGAGCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| 3UTR-3UTR CCA 90 bp | GTTCATAACCAAAGAGCCATGTCTTCCTTTCAGGTAAGTATGGTCATTAGGATCAAAAATGGTAGTGTGTaGAGCTTCAAGCAAGTCTTC | + |
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Preference number: 2 (lower is better) Translates to: VHNQRAMSSFQVSMVIRIKNGSV*SFKQVF Trigger: GAAGACTTGCTTGAAGCTCCACACACTACCATTTTT...GATCCTAATGACCATACTTACCTGAAAGGAAGACATGGCTCTTTGGTTATGAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000557652.1 |
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| 3UTR-3UTR CCA 90 bp | GTTCATAACCAAAGAGCCATGTCTTCCTTTCAGGTAAGTATGGTCATTAGGATCCTGTCTCTTTTTGCTTaGAATGTAGATGAAACACCT | + |
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Preference number: 2 (lower is better) Translates to: VHNQRAMSSFQVSMVIRILSLFA*NVDETP Trigger: AGGTGTTTCATCTACATTCCAAGCAAAAAGAGACAG...GATCCTAATGACCATACTTACCTGAAAGGAAGACATGGCTCTTTGGTTATGAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000557652.1 |
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| 3UTR GCA 72 bp | AAACTGGGAACTGCCACAGCTCTTTTAATGAACACGTaGCCCGGATACGCTACCAAGGAACTAATAAGGTTT | + |
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Preference number: 3 (lower is better) Translates to: KLGTATALLMNT*PGYATKELIRF Trigger: AAACCTTATTAGTTCCTTGGTAGCGTATCCGGGGCACGTGTTCATTAAAAGAGCTGTGGCAGTTCCCAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR TCA 90 bp | GCGGGACCAGGGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGAGGACAGAGCGAGTGCGTaGGAACACGGCAGGGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: AGPGVEYCGSGGTERVREDRASA*EHGRGG Trigger: CCCTCCCCTGCCGTGTTCTCACGCACTCGCTCTGTC...CTCACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCCCTGGTCCCGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR TCA 90 bp | GGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGAGAACACGGCAGACGCGGGGAAGATGGTaGTGGCCGCAGGACAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: GWNIVVLEGQSECVRTRQTRGRW*WPQDRV Trigger: CACCCTGTCCTGCGGCCATCACCATCTTCCCCGCGT...CTGCCGTGTTCTCACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR GCA 90 bp | TGGCGGGACCAGGGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGCGAGAGGTGCTGCTATaGATGACCAAGGCTGGCACG | + |
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Preference number: 4 (lower is better) Translates to: WRDQGWNIVVLEGQSECVREVLL*MTKAGT Trigger: CGTGCCAGCCTTGGTCATGCATAGCAGCACCTCTCG...CACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCCCTGGTCCCGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR CCA 90 bp | GCGGGACCAGGGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGAGATGCATGACCAAGGCTaGCACGCGGGGAAGATGGTG | + |
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Preference number: 4 (lower is better) Translates to: AGPGVEYCGSGGTERVREMHDQG*HAGKMV Trigger: CACCATCTTCCCCGCGTGCCAGCCTTGGTCATGCAT...CTCACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCCCTGGTCCCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR TCA 90 bp | GCGGGACCAGGGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGAGGAGCAACGAAAAGGGTaGGGCACAGAACCCGGGAAT | + |
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Preference number: 4 (lower is better) Translates to: AGPGVEYCGSGGTERVREEQRKG*GTEPGN Trigger: ATTCCCGGGTTCTGTGCCTCACCCTTTTCGTTGCTC...CTCACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCCCTGGTCCCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR TCA 90 bp | CTTCCATCTCTCCTTTACGAAGACGGTTATAATCCTGGCGGGACCAGGGGTGGAGGCCGCAGGACAGGGTaGATGCGGGGGATTCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LPSLLYEDGYNPGGTRGGGRRTG*MRGIPC Trigger: ACAGGGAATCCCCCGCATTCACCCTGTCCTGCGGCC...TCCACCCCTGGTCCCGCCAGGATTATAACCGTCTTCGTAAAGGAGAGATGGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR TCA 90 bp | CTTGCCCTTCCATCTCTCCTTTACGAAGACGGTTATAATCCTGGCGGGACCAGGCGTGGCCGCCTCCGGTaGATGATTCGGGAGCAACGA | + |
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Preference number: 4 (lower is better) Translates to: LALPSLLYEDGYNPGGTRRGRLR*MIREQR Trigger: TCGTTGCTCCCGAATCATTCACCGGAGGCGGCCACG...CCTGGTCCCGCCAGGATTATAACCGTCTTCGTAAAGGAGAGATGGAAGGGCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR CCA 90 bp | GCGGGACCAGGGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGAGAGGGGTGGAATATTGTaGTTCTGGAGGGACAGAGCG | + |
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Preference number: 4 (lower is better) Translates to: AGPGVEYCGSGGTERVRERGGIL*FWRDRA Trigger: CGCTCTGTCCCTCCAGAACCACAATATTCCACCCCT...CTCACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCCCTGGTCCCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR TCA 90 bp | ATAATCCTGGCGGGACCAGGGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGCCGCCTCCGGTGAATaGTTCGGGAGCAACGAAAAG | + |
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Preference number: 4 (lower is better) Translates to: IILAGPGVEYCGSGGTERAASGE*FGSNEK Trigger: CTTTTCGTTGCTCCCGAATCATTCACCGGAGGCGGC...TCGCTCTGTCCCTCCAGAACCACAATATTCCACCCCTGGTCCCGCCAGGATTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR CCA 90 bp | AAGACGGTTATAATCCTGGCGGGACCAGGGGTGGAATATTGTGGTTCTGGAGGGAAGGGGCAGCGTTCGTaGCCGCCTCCGGTGAATGAT | + |
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Preference number: 4 (lower is better) Translates to: KTVIILAGPGVEYCGSGGKGQRS*PPPVND Trigger: ATCATTCACCGGAGGCGGCCACGAACGCTGCCCCTT...CCCTCCAGAACCACAATATTCCACCCCTGGTCCCGCCAGGATTATAACCGTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR TCA 90 bp | GAACACGTGCCCCGGATACGCTACCAAGGAACTAATAAGGTTTTAGGCATCGTTAGGTGCTGCTATGCATaGCCAAGGCTGGCACGCGGG | + |
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Preference number: 4 (lower is better) Translates to: EHVPRIRYQGTNKVLGIVRCCYA*PRLARG Trigger: CCCGCGTGCCAGCCTTGGTCATGCATAGCAGCACCT...AACGATGCCTAAAACCTTATTAGTTCCTTGGTAGCGTATCCGGGGCACGTGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR GCA 90 bp | TGGCGGGACCAGGGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGCTAGCCAACTCAGACTaGATCACAGAATGCAACCAA | + |
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Preference number: 4 (lower is better) Translates to: WRDQGWNIVVLEGQSECVLANSD*ITECNQ Trigger: TTGGTTGCATTCTGTGATGCAGTCTGAGTTGGCTAG...CACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCCCTGGTCCCGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR CCA 90 bp | CTTCCATCTCTCCTTTACGAAGACGGTTATAATCCTGGCGGGACCAGGGGTGGATGGCGGGACCAGGGGTaGAATATTGTGGTTCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LPSLLYEDGYNPGGTRGGWRDQG*NIVVLE Trigger: CTCCAGAACCACAATATTCCACCCCTGGTCCCGCCA...TCCACCCCTGGTCCCGCCAGGATTATAACCGTCTTCGTAAAGGAGAGATGGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR TCA 90 bp | GAACACGTGCCCCGGATACGCTACCAAGGAACTAATAAGGTTTTAGGCATCGTTGAGGGCAGCAAGACGTaGCCACGGAGTAGGAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: EHVPRIRYQGTNKVLGIVEGSKT*PRSRRE Trigger: TTCCCTCCTACTCCGTGGTCACGTCTTGCTGCCCTC...AACGATGCCTAAAACCTTATTAGTTCCTTGGTAGCGTATCCGGGGCACGTGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR GCA 90 bp | GGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGAGAACACGGCAGCTTTTAATGAACACGTaGCCCGGATACGCTACCAAG | + |
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Preference number: 4 (lower is better) Translates to: GWNIVVLEGQSECVRTRQLLMNT*PGYATK Trigger: CTTGGTAGCGTATCCGGGGCACGTGTTCATTAAAAG...CTGCCGTGTTCTCACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR GCA 90 bp | GAACACGTGCCCCGGATACGCTACCAAGGAACTAATAAGGTTTTAGGCATCGTTAGGGCGGGAAGAGACTaGGAGAGGTGCTGCTATGCA | + |
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Preference number: 4 (lower is better) Translates to: EHVPRIRYQGTNKVLGIVRAGRD*ERCCYA Trigger: TGCATAGCAGCACCTCTCGCAGTCTCTTCCCGCCCT...AACGATGCCTAAAACCTTATTAGTTCCTTGGTAGCGTATCCGGGGCACGTGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR GCA 90 bp | GGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGAGAACACGGCAGGACTGCATCACAGAATaGAACCAAATGTTTGCTCAA | + |
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Preference number: 4 (lower is better) Translates to: GWNIVVLEGQSECVRTRQDCITE*NQMFAQ Trigger: TTGAGCAAACATTTGGTTGCATTCTGTGATGCAGTC...CTGCCGTGTTCTCACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR CCA 90 bp | GAACACGTGCCCCGGATACGCTACCAAGGAACTAATAAGGTTTTAGGCATCGTTGGAATATTGTGGTTCTaGAGGGACAGAGCGAGTGCG | + |
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Preference number: 4 (lower is better) Translates to: EHVPRIRYQGTNKVLGIVGILWF*RDRASA Trigger: CGCACTCGCTCTGTCCCTCCAGAACCACAATATTCC...AACGATGCCTAAAACCTTATTAGTTCCTTGGTAGCGTATCCGGGGCACGTGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR GCA 90 bp | GAACACGTGCCCCGGATACGCTACCAAGGAACTAATAAGGTTTTAGGCATCGTTGTTATTACTAATGCCTaGAGGCTTTCAGCGTTAGGT | + |
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Preference number: 4 (lower is better) Translates to: EHVPRIRYQGTNKVLGIVVITNA*RLSALG Trigger: ACCTAACGCTGAAAGCCTGCAGGCATTAGTAATAAC...AACGATGCCTAAAACCTTATTAGTTCCTTGGTAGCGTATCCGGGGCACGTGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR CCA 90 bp | GTTCATAACCAAAGAGCCATGTCTTCCTTTCAGGTAAGTATGGTCATTAGGATCGAACTGGAAAAAGCCTaGGTCCCTGAAGACTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: VHNQRAMSSFQVSMVIRIELEKA*VPEDCK Trigger: CTTACAGTCTTCAGGGACCCAGGCTTTTTCCAGTTC...GATCCTAATGACCATACTTACCTGAAAGGAAGACATGGCTCTTTGGTTATGAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000557652.1 |
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| CDS-3UTR CCA 90 bp | GTTCATAACCAAAGAGCCATGTCTTCCTTTCAGGTAAGTATGGTCATTAGGATCGAGGGCTATGTTCTTTaGGTGGCAGAACAGAGAACT | + |
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Preference number: 4 (lower is better) Translates to: VHNQRAMSSFQVSMVIRIEGYVL*VAEQRT Trigger: AGTTCTCTGTTCTGCCACCCAAAGAACATAGCCCTC...GATCCTAATGACCATACTTACCTGAAAGGAAGACATGGCTCTTTGGTTATGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557652.1 |
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| CDS-3UTR TCA 90 bp | GTTCATAACCAAAGAGCCATGTCTTCCTTTCAGGTAAGTATGGTCATTAGGATCTGCTTGGAATGTAGATaGAACACCTGGAGTTCTAGA | + |
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Preference number: 4 (lower is better) Translates to: VHNQRAMSSFQVSMVIRICLECR*NTWSSR Trigger: TCTAGAACTCCAGGTGTTTCATCTACATTCCAAGCA...GATCCTAATGACCATACTTACCTGAAAGGAAGACATGGCTCTTTGGTTATGAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557652.1 |
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| CDS CCA 90 bp | GGGCGGGAAGAGACTGCGAGAGGTGCTGCTATGCATGACCAAGGCTaGCACGCGGGGAAGATGGTGATGGCCGCAGGACAGGGTGAATGC | + |
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Preference number: 5 (lower is better) Translates to: GREETARGAAMHDQG*HAGKMVMAAGQGEC Trigger: GCATTCACCCTGTCCTGCGGCCATCACCATCTTCCCCGCGTGCCAGCCTTGGTCATGCATAGCAGCACCTCTCGCAGTCTCTTCCCGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS TCA 90 bp | GCCTCTTCTAGGGCGGGAAGAGACTGCGAGAGGTGCTGCTATGCATaGCCAAGGCTGGCACGCGGGGAAGATGGTGATGGCCGCAGGACA | + |
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Preference number: 5 (lower is better) Translates to: ASSRAGRDCERCCYA*PRLARGEDGDGRRT Trigger: TGTCCTGCGGCCATCACCATCTTCCCCGCGTGCCAGCCTTGGTCATGCATAGCAGCACCTCTCGCAGTCTCTTCCCGCCCTAGAAGAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS TCA 90 bp | GAGGTGCTGCTATGCATGACCAAGGCTGGCACGCGGGGAAGATGGTaGTGGCCGCAGGACAGGGTGAATGCGGGGGATTCCCTGTTAAGG | + |
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Preference number: 5 (lower is better) Translates to: EVLLCMTKAGTRGRW*WPQDRVNAGDSLLR Trigger: CCTTAACAGGGAATCCCCCGCATTCACCCTGTCCTGCGGCCATCACCATCTTCCCCGCGTGCCAGCCTTGGTCATGCATAGCAGCACCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR CAA 90 bp | AAGACGGTTATAATCCTGGCGGGACCAGGGGTGGAATATTGTGGTTCTGGAGGGACCAGGGGTGGAATATaGTGGTTCTGGAGGGACAGA | + |
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Preference number: 5 (lower is better) Translates to: KTVIILAGPGVEYCGSGGTRGGI*WFWRDR Trigger: TCTGTCCCTCCAGAACCACAATATTCCACCCCTGGT...CCCTCCAGAACCACAATATTCCACCCCTGGTCCCGCCAGGATTATAACCGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR CAA 90 bp | GACCAGGGGTGGAATATTGTGGTTCTGGAGGGACAGAGCGAGTGCGTGAGAACACGATTGACATCCTCCTaGCCCTTCCATCTCTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: DQGWNIVVLEGQSECVRTRLTSS*PFHLSF Trigger: AAAGGAGAGATGGAAGGGCAAGGAGGATGTCAATCG...TGTTCTCACGCACTCGCTCTGTCCCTCCAGAACCACAATATTCCACCCCTGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS-3UTR CAA 90 bp | CTTGCCCTTCCATCTCTCCTTTACGAAGACGGTTATAATCCTGGCGGGACCAGGACGCTAAAAGCCCGATaGACATCCTCCTTGCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: LALPSLLYEDGYNPGGTRTLKAR*TSSLPF Trigger: GAAGGGCAAGGAGGATGTCAATCGGGCTTTTAGCGT...CCTGGTCCCGCCAGGATTATAACCGTCTTCGTAAAGGAGAGATGGAAGGGCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS TCA 90 bp | TGGCCTCCTGTTTTCTTCTCTGTCTCTTTTTGCTTGGAATGTAGATaGAACACCTGGAGTTCTAGAAGCCATTCTGTACCACGTGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: WPPVFFSVSFCLECR*NTWSSRSHSVPRAR Trigger: TCTTGCACGTGGTACAGAATGGCTTCTAGAACTCCAGGTGTTTCATCTACATTCCAAGCAAAAAGAGACAGAGAAGAAAACAGGAGGCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000555752.1 ENST00000557652.1 |
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| CDS-3UTR CAA 90 bp | GTTCATAACCAAAGAGCCATGTCTTCCTTTCAGGTAAGTATGGTCATTAGGATCAGAGGGCTATGTTCTTaGGGTGGCAGAACAGAGAAC | + |
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Preference number: 5 (lower is better) Translates to: VHNQRAMSSFQVSMVIRIRGLCS*GGRTEN Trigger: GTTCTCTGTTCTGCCACCCAAAGAACATAGCCCTCT...GATCCTAATGACCATACTTACCTGAAAGGAAGACATGGCTCTTTGGTTATGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557652.1 |
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| CDS TCA 90 bp | TATCAATGTTTAGTGATACAGAAATGCATAAAACAAGGGACAGAGTaGTACAGAACCCTGCGTTATTACCTCCTCAATTACCAGTTCCCT | + |
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Preference number: 5 (lower is better) Translates to: YQCLVIQKCIKQGTE*YRTLRYYLLNYQFP Trigger: AGGGAACTGGTAATTGAGGAGGTAATAACGCAGGGTTCTGTATCACTCTGTCCCTTGTTTTATGCATTTCTGTATCACTAAACATTGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555752.1 |
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| CDS-3UTR CAA 90 bp | GTTCATAACCAAAGAGCCATGTCTTCCTTTCAGGTAAGTATGGTCATTAGGATCGCACTGATATCTATTTaGTCAAAGCCTTCTTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: VHNQRAMSSFQVSMVIRIALISI*SKPSLL Trigger: CAACAAAGAAGGCTTTGACAAAATAGATATCAGTGC...GATCCTAATGACCATACTTACCTGAAAGGAAGACATGGCTCTTTGGTTATGAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557652.1 |
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| CDS TCA 90 bp | GTAATTACCACCAACTTAAGTGTCAGTCTTAATTTCAAAGGAAGCTaGAGAACACACCAACAGATTTGCATGGTAGACTTATTACTGCTT | + |
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Preference number: 5 (lower is better) Translates to: VITTNLSVSLNFKGS*RTHQQICMVDLLLL Trigger: AAGCAGTAATAAGTCTACCATGCAAATCTGTTGGTGTGTTCTTCAGCTTCCTTTGAAATTAAGACTGACACTTAAGTTGGTGGTAATTAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556217.5 |
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| CDS TCA 72 bp | AGGGCGGGAAGAGACTGCGAGAGGTGCTGCTATGCATaGCCAAGGCTGGCACGCGGGGAAGATGGTGATGGC | + |
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Preference number: 6 (lower is better) Translates to: RAGRDCERCCYA*PRLARGEDGDG Trigger: GCCATCACCATCTTCCCCGCGTGCCAGCCTTGGTCATGCATAGCAGCACCTCTCGCAGTCTCTTCCCGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS CCA 72 bp | GAGACTGCGAGAGGTGCTGCTATGCATGACCAAGGCTaGCACGCGGGGAAGATGGTGATGGCCGCAGGACAG | + |
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Preference number: 6 (lower is better) Translates to: ETARGAAMHDQG*HAGKMVMAAGQ Trigger: CTGTCCTGCGGCCATCACCATCTTCCCCGCGTGCCAGCCTTGGTCATGCATAGCAGCACCTCTCGCAGTCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS CCA 72 bp | GAATGCGGGGGATTCCCTGTTAAGGGGCAGCGTTCGTaGCCGCCTCCGGTGAATGATTCGGGAGCAACGAAA | + |
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Preference number: 6 (lower is better) Translates to: ECGGFPVKGQRS*PPPVNDSGATK Trigger: TTTCGTTGCTCCCGAATCATTCACCGGAGGCGGCCACGAACGCTGCCCCTTAACAGGGAATCCCCCGCATTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555943.1 |
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| CDS CCA 72 bp | GCCATTCTGTACCACGTGCAAGAGGGCTATGTTCTTTaGGTGGCAGAACAGAGAACTGGAAAAAGCCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: AILYHVQEGYVL*VAEQRTGKSLG Trigger: ACCCAGGCTTTTTCCAGTTCTCTGTTCTGCCACCCAAAGAACATAGCCCTCTTGCACGTGGTACAGAATGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000555752.1 ENST00000557652.1 |
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| CDS TCA 72 bp | GTTTTCTTCTCTGTCTCTTTTTGCTTGGAATGTAGATaGAACACCTGGAGTTCTAGAAGCCATTCTGTACCA | + |
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Preference number: 6 (lower is better) Translates to: VFFSVSFCLECR*NTWSSRSHSVP Trigger: TGGTACAGAATGGCTTCTAGAACTCCAGGTGTTTCATCTACATTCCAAGCAAAAAGAGACAGAGAAGAAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000555752.1 ENST00000557652.1 |
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