RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SUMO2 (Homo sapiens)

Ensembl gene IDs: ENSG00000188612

Ensembl transcript IDs: ENST00000420826.7, ENST00000578238.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCAGCTACTCAGGAGGCTaGGGTTGCAGTGAGCTGAAA +
Preference number: 2 (lower is better)
Translates to: SFIVTVYFTTFLELGFLISYSGG*GCSELK
Trigger: TTTCAGCTCACTGCAACCTCAGCCTCCTGAGTAGCT...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR-3UTR CCA 90 bp AGAACTTTTTCCTTGCCACATGTGCTACCCTATACCCTATGCTCCGTGCCTCACACTTGCATATTAACATaGGACCTAGAGAAACTTTTG +
Preference number: 2 (lower is better)
Translates to: RTFSLPHVLPYTLCSVPHTCILT*DLEKLL
Trigger: CAAAAGTTTCTCTAGGTCCCATGTTAATATGCAAGT...GTGAGGCACGGAGCATAGGGTATAGGGTAGCACATGTGGCAAGGAAAAAGTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR-3UTR CCA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCGAAACCCCAACACTTTaGGAGGCCAAGACAAGGGAC +
Preference number: 2 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIETPTL*EAKTRD
Trigger: GTCCCTTGTCTTGGCCTCCCAAAGTGTTGGGGTTTC...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR-3UTR TCA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCGCCTGGCTAACATGGTaGAGCCCTGTCTCTACTAAA +
Preference number: 2 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIAWLTW*SPVSTK
Trigger: TTTAGTAGAGACAGGGCTTCACCATGTTAGCCAGGC...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR-3UTR CCA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCAAGTGCAGGCTAGAATaGTTCAGTGTTTTATCAGCA +
Preference number: 2 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIKCRLE*FSVLSA
Trigger: TGCTGATAAAACACTGAACCATTCTAGCCTGCACTT...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR-3UTR CCA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCAAATCCACGATACTATaGCCCAATTTTTCTGCTAGT +
Preference number: 2 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIKSTIL*PNFSAS
Trigger: ACTAGCAGAAAAATTGGGCCATAGTATCGTGGATTT...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR-3UTR CCA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCTATACAGAAAATACCTaGAAATCCACGATACTATGG +
Preference number: 2 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIYTENT*KSTILW
Trigger: CCATAGTATCGTGGATTTCCAGGTATTTTCTGTATA...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR TCA 72 bp GAAACCCCAACACTTTGGGAGGCCAAGACAAGGGACTaGGGCCAGAAGTTCGAGACCAAACTGGTCAACATG +
Preference number: 3 (lower is better)
Translates to: ETPTLWEAKTRD*GQKFETKLVNM
Trigger: CATGTTGACCAGTTTGGTCTCGAACTTCTGGCCTCAGTCCCTTGTCTTGGCCTCCCAAAGTGTTGGGGTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR-3UTR CAA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGATCAGAACTTTTTCCTaGCCACATGTGCTACCCTAT +
Preference number: 3 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWIRTFS*PHVLPY
Trigger: ATAGGGTAGCACATGTGGCAAGGAAAAAGTTCTGAT...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR-3UTR CAA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCAGGGAGGAGAATCAGTaGAACCCGGGAGGCGGAGGT +
Preference number: 3 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIREENQ*NPGGGG
Trigger: ACCTCCGCCTCCCGGGTTCAACTGATTCTCCTCCCT...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR-3UTR CAA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGTTTCTGCTAGTATACTaGCATATTAACATGGGACCT +
Preference number: 3 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWFLLVY*HINMGP
Trigger: AGGTCCCATGTTAATATGCAAGTATACTAGCAGAAA...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR GCA 90 bp AGAACTTTTTCCTTGCCACATGTGCTACCCTATACCCTATGCTCCGTGCCTCACCCGGGAGGTGGAGCTTaGCGTGAGCCAAGATTGCGC +
Preference number: 4 (lower is better)
Translates to: RTFSLPHVLPYTLCSVPHPGGGA*REPRLR
Trigger: GCGCAATCTTGGCTCACGGCAAGCTCCACCTCCCGG...GTGAGGCACGGAGCATAGGGTATAGGGTAGCACATGTGGCAAGGAAAAAGTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR TCA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGGGCGGGTGGATGAACTaGGGTCAGGAGTTTGAGACC +
Preference number: 4 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWGGWMN*GQEFET
Trigger: GGTCTCAAACTCCTGACCTCAGTTCATCCACCCGCC...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR TCA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGTCTATAAAATGGCAGTaGGGCCGGGCGCAGTGGATC +
Preference number: 4 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWSIKWQ*GRAQWI
Trigger: GATCCACTGCGCCCGGCCTCACTGCCATTTTATAGA...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR TCA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGAGCTACTCAGGAGGCTaGGGTTGCAGTGAGCTGAAA +
Preference number: 4 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWSYSGG*GCSELK
Trigger: TTTCAGCTCACTGCAACCTCAGCCTCCTGAGTAGCT...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR TCA 90 bp AGAACTTTTTCCTTGCCACATGTGCTACCCTATACCCTATGCTCCGTGCCTCACGTCCCTCAATATTCTTaGATAGGCCAGGCGTGGTGG +
Preference number: 4 (lower is better)
Translates to: RTFSLPHVLPYTLCSVPHVPQYS*IGQAWW
Trigger: CCACCACGCCTGGCCTATTCAAGAATATTGAGGGAC...GTGAGGCACGGAGCATAGGGTATAGGGTAGCACATGTGGCAAGGAAAAAGTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR TCA 90 bp AGAACTTTTTCCTTGCCACATGTGCTACCCTATACCCTATGCTCCGTGCCTCACGAGGTTGCAGTGAGCTaGGATCATGTCATTGGTCTC +
Preference number: 4 (lower is better)
Translates to: RTFSLPHVLPYTLCSVPHEVAVS*DHVIGL
Trigger: GAGACCAATGACATGATCTCAGCTCACTGCAACCTC...GTGAGGCACGGAGCATAGGGTATAGGGTAGCACATGTGGCAAGGAAAAAGTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CCA 90 bp AGAACTTTTTCCTTGCCACATGTGCTACCCTATACCCTATGCTCCGTGCCTCACGTAAACCCAGCACATTaGGAGGCTAAGGCAGATAGA +
Preference number: 4 (lower is better)
Translates to: RTFSLPHVLPYTLCSVPHVNPAH*EAKADR
Trigger: TCTATCTGCCTTAGCCTCCCAATGTGCTGGGTTTAC...GTGAGGCACGGAGCATAGGGTATAGGGTAGCACATGTGGCAAGGAAAAAGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CCA 90 bp AGAACTTTTTCCTTGCCACATGTGCTACCCTATACCCTATGCTCCGTGCCTCACCTGAGATCATGTCATTaGTCTCCAGTTGGGGCAACA +
Preference number: 4 (lower is better)
Translates to: RTFSLPHVLPYTLCSVPHLRSCH*SPVGAT
Trigger: TGTTGCCCCAACTGGAGACCAATGACATGATCTCAG...GTGAGGCACGGAGCATAGGGTATAGGGTAGCACATGTGGCAAGGAAAAAGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR GCA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGCTACCCTATACCCTATaGTCCGTGCCTCACTTAATA +
Preference number: 4 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWLPYTL*SVPHLI
Trigger: TATTAAGTGAGGCACGGAGCATAGGGTATAGGGTAG...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR GCA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGTTTCCTTGCCACATGTaGTACCCTATACCCTATGCT +
Preference number: 4 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWFPCHM*YPIPYA
Trigger: AGCATAGGGTATAGGGTAGCACATGTGGCAAGGAAA...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR GCA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCCCGGGAGGCGGAGCTTaGAGTGAGCCAAGATTGTGC +
Preference number: 4 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIPGGGA*SEPRLC
Trigger: GCACAATCTTGGCTCACTGCAAGCTCCGCCTCCCGG...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CCA 90 bp CATGTGCTACCCTATACCCTATGCTCCGTGCCTCACTTAATATACAGAAAATACGAAACCCCAACACTTTaGGAGGCCAAGACAAGGGAC +
Preference number: 4 (lower is better)
Translates to: HVLPYTLCSVPHLIYRKYETPTL*EAKTRD
Trigger: GTCCCTTGTCTTGGCCTCCCAAAGTGTTGGGGTTTC...GTATTTTCTGTATATTAAGTGAGGCACGGAGCATAGGGTATAGGGTAGCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CCA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGAAGTGCAGGCTAGAATaGTTCAGTGTTTTATCAGCA +
Preference number: 4 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWKCRLE*FSVLSA
Trigger: TGCTGATAAAACACTGAACCATTCTAGCCTGCACTT...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CCA 90 bp CATGTGCTACCCTATACCCTATGCTCCGTGCCTCACTTAATATACAGAAAATACTGTAGTGGTTGGGCATaGGGTCTAACACCTGAAACC +
Preference number: 4 (lower is better)
Translates to: HVLPYTLCSVPHLIYRKYCSGWA*GLTPET
Trigger: GGTTTCAGGTGTTAGACCCCATGCCCAACCACTACA...GTATTTTCTGTATATTAAGTGAGGCACGGAGCATAGGGTATAGGGTAGCACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CCA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGAAATCCACGATACTATaGCCCAATTTTTCTGCTAGT +
Preference number: 4 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWKSTIL*PNFSAS
Trigger: ACTAGCAGAAAAATTGGGCCATAGTATCGTGGATTT...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CCA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGACTTGCATATTAACATaGGACCTAGAGAAACTTTTG +
Preference number: 4 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWTCILT*DLEKLL
Trigger: CAAAAGTTTCTCTAGGTCCCATGTTAATATGCAAGT...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CCA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGTATACAGAAAATACCTaGAAATCCACGATACTATGG +
Preference number: 4 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWYTENT*KSTILW
Trigger: CCATAGTATCGTGGATTTCCAGGTATTTTCTGTATA...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR TCA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCATGGGGTCTAACACCTaGAACCCCAACACTTTGGGA +
Preference number: 4 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIMGSNT*NPNTLG
Trigger: TCCCAAAGTGTTGGGGTTTCAGGTGTTAGACCCCAT...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR GCA 90 bp CATGTGCTACCCTATACCCTATGCTCCGTGCCTCACTTAATATACAGAAAATACTCAGAACTTTTTCCTTaGCACATGTGCTACCCTATA +
Preference number: 4 (lower is better)
Translates to: HVLPYTLCSVPHLIYRKYSELFP*HMCYPI
Trigger: TATAGGGTAGCACATGTGGCAAGGAAAAAGTTCTGA...GTATTTTCTGTATATTAAGTGAGGCACGGAGCATAGGGTATAGGGTAGCACATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000420826.7
3UTR CAA 72 bp CCACGATACTATGGCCCAATTTTTCTGCTAGTATACTaGCATATTAACATGGGACCTAGAGAAACTTTTGGA +
Preference number: 4 (lower is better)
Translates to: PRYYGPIFLLVY*HINMGPRETFG
Trigger: TCCAAAAGTTTCTCTAGGTCCCATGTTAATATGCAAGTATACTAGCAGAAAAATTGGGCCATAGTATCGTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS GCA 90 bp AGAGGTGAAGCCCGAGCCCAGAGGACTCCTCGCCGCCTCGGAGACTaGAACACCCGACGCGGGGTCGACAGAAGGTGGAGACCCCGCGCG +
Preference number: 5 (lower is better)
Translates to: RGEARAQRTPRRLGD*NTRRGVDRRWRPRA
Trigger: CGCGCGGGGTCTCCACCTTCTGTCGACCCCGCGTCGGGTGTTGCAGTCTCCGAGGCGGCGAGGAGTCCTCTGGGCTCGGGCTTCACCTCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000578238.2
CDS-3UTR CAA 90 bp AGGCATAACCTCTTTCAAAAAGACCTAAGACGGGAGGCTGAGGCAGGAGAATGGTGTCCCTCAATATTCTaGAATAGGCCAGGCGTGGTG +
Preference number: 5 (lower is better)
Translates to: RHNLFQKDLRREAEAGEWCPSIF*NRPGVV
Trigger: CACCACGCCTGGCCTATTCAAGAATATTGAGGGACA...CCATTCTCCTGCCTCAGCCTCCCGTCTTAGGTCTTTTTGAAAGAGGTTATGCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CAA 90 bp CATGTGCTACCCTATACCCTATGCTCCGTGCCTCACTTAATATACAGAAAATACGTCATTGGTCTCCAGTaGGGGCAACAAGAGCGAAAC +
Preference number: 5 (lower is better)
Translates to: HVLPYTLCSVPHLIYRKYVIGLQ*GQQERN
Trigger: GTTTCGCTCTTGTTGCCCCAACTGGAGACCAATGAC...GTATTTTCTGTATATTAAGTGAGGCACGGAGCATAGGGTATAGGGTAGCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CAA 90 bp CATGTGCTACCCTATACCCTATGCTCCGTGCCTCACTTAATATACAGAAAATACGCTGAGATCATGTCATaGGTCTCCAGTTGGGGCAAC +
Preference number: 5 (lower is better)
Translates to: HVLPYTLCSVPHLIYRKYAEIMS*VSSWGN
Trigger: GTTGCCCCAACTGGAGACCAATGACATGATCTCAGC...GTATTTTCTGTATATTAAGTGAGGCACGGAGCATAGGGTATAGGGTAGCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CAA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCGCCAAGATCACACCATaGCACCACTCCAGACTAGGC +
Preference number: 5 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIAKITP*HHSRLG
Trigger: GCCTAGTCTGGAGTGGTGCAATGGTGTGATCTTGGC...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CAA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCATCAGAACTTTTTCCTaGCCACATGTGCTACCCTAT +
Preference number: 5 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIIRTFS*PHVLPY
Trigger: ATAGGGTAGCACATGTGGCAAGGAAAAAGTTCTGAT...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS-3UTR CAA 90 bp AGTTTTATAGTCACCGTCTATTTCACAACTTTTCTGGAACTTGGCTTTCTCATCTTTCTGCTAGTATACTaGCATATTAACATGGGACCT +
Preference number: 5 (lower is better)
Translates to: SFIVTVYFTTFLELGFLIFLLVY*HINMGP
Trigger: AGGTCCCATGTTAATATGCAAGTATACTAGCAGAAA...GATGAGAAAGCCAAGTTCCAGAAAAGTTGTGAAATAGACGGTGACTATAAAACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000420826.7
CDS GCA 72 bp GCCCGAGCCCAGAGGACTCCTCGCCGCCTCGGAGACTaGAACACCCGACGCGGGGTCGACAGAAGGTGGAGA +
Preference number: 6 (lower is better)
Translates to: ARAQRTPRRLGD*NTRRGVDRRWR
Trigger: TCTCCACCTTCTGTCGACCCCGCGTCGGGTGTTGCAGTCTCCGAGGCGGCGAGGAGTCCTCTGGGCTCGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000578238.2