Pregenerated sensors for SUDS3 (Homo sapiens)
Ensembl gene IDs: ENSG00000111707Ensembl transcript IDs: ENST00000541280.1, ENST00000543473.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTTGTGAGGACGCCGAGGAGAAGGCAATGGCGGAGTCGAGACTATaGCTAAGGGCGCCCTCAATACCCTCAAAAGTCAGAGAGGAGAGA | + |
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Preference number: 1 (lower is better) Translates to: SCEDAEEKAMAESRL*LRAPSIPSKVREER Trigger: TCTCTCCTCTCTGACTTTTGAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGGCGTCCTCACAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR TCA 90 bp | GAGGGAAGTCCTGCCTCACAGTCAAGGCTAACAAACAAGAACAGGTaGAGCCTGTGTTTACCATGGGCTGGGTTCACTGTAGTAAACATC | + |
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Preference number: 1 (lower is better) Translates to: EGSPASQSRLTNKNR*SLCLPWAGFTVVNI Trigger: GATGTTTACTACAGTGAACCCAGCCCATGGTAAACACAGGCTTCACCTGTTCTTGTTTGTTAGCCTTGACTGTGAGGCAGGACTTCCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR TCA 90 bp | CACCCAGTCCTGAACACAGGGTCTTATACACAAATACATGTAGCTTaGTTTGCAGATCAGCCTCTGGGATCGACCTTACACTGGCCCCAA | + |
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Preference number: 1 (lower is better) Translates to: HPVLNTGSYTQIHVA*FADQPLGSTLHWPQ Trigger: TTGGGGCCAGTGTAAGGTCGATCCCAGAGGCTGATCTGCAAATCAAGCTACATGTATTTGTGTATAAGACCCTGTGTTCAGGACTGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR CCA 90 bp | AAGGCTAACAAACAAGAACAGGTGAAGCCTGTGTTTACCATGGGCTaGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGC | + |
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Preference number: 1 (lower is better) Translates to: KANKQEQVKPVFTMG*VHCSKHHSSRGLEG Trigger: GCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCCAGCCCATGGTAAACACAGGCTTCACCTGTTCTTGTTTGTTAGCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR GCA 90 bp | GCAGAGGTCCCACAGAGAAGGCCAGAAAAAGAGGCAATTTGTTCCTaGTTCAATGCGGAACCCCAGTGGTTATCAATACAATCCTCAACT | + |
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Preference number: 1 (lower is better) Translates to: AEVPQRRPEKEAICS*FNAEPQWLSIQSST Trigger: AGTTGAGGATTGTATTGATAACCACTGGGGTTCCGCATTGAAGCAGGAACAAATTGCCTCTTTTTCTGGCCTTCTCTGTGGGACCTCTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR GCA 90 bp | AGTCCTGAACACAGGGTCTTATACACAAATACATGTAGCTTGATTTaGAGATCAGCCTCTGGGATCGACCTTACACTGGCCCCAATTAGA | + |
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Preference number: 1 (lower is better) Translates to: SPEHRVLYTNTCSLI*RSASGIDLTLAPIR Trigger: TCTAATTGGGGCCAGTGTAAGGTCGATCCCAGAGGCTGATCTGCAAATCAAGCTACATGTATTTGTGTATAAGACCCTGTGTTCAGGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR GCA 90 bp | CGCCGAGGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATGAGGCAATTTGTTCCTaGTTCAATGCGGAACCCCAG | + |
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Preference number: 2 (lower is better) Translates to: RRGEGNGGVETMTKGALNEAICS*FNAEPQ Trigger: CTGGGGTTCCGCATTGAAGCAGGAACAAATTGCCTC...ATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR TCA 90 bp | CGCCGAGGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATCAGCTGCACAATATGTaGTGTGACACACACATCGTA | + |
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Preference number: 2 (lower is better) Translates to: RRGEGNGGVETMTKGALNQLHNM*CDTHIV Trigger: TACGATGTGTGTGTCACATCACATATTGTGCAGCTG...ATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR TCA 90 bp | TCACCACTGAGGCCTGTCAGGCTTCAACTGCTGATTTTTCACCTCTGGGGTGACTCGCAGGGCACTACATaGAAACCAACAGCTGCACAA | + |
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Preference number: 2 (lower is better) Translates to: SPLRPVRLQLLIFHLWGDSQGTT*KPTAAQ Trigger: TTGTGCAGCTGTTGGTTTTCATGTAGTGCCCTGCGA...GTCACCCCAGAGGTGAAAAATCAGCAGTTGAAGCCTGACAGGCCTCAGTGGTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR TCA 90 bp | CGCCGAGGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATGGAGGACAAAACACATaGTCATTGAAAAACTCCACC | + |
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Preference number: 2 (lower is better) Translates to: RRGEGNGGVETMTKGALNGGQNT*SLKNST Trigger: GGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCC...ATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGGCG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATACCCTCAATGCGGAACCCCAGTaGTTATCAATACAATCCTCA | + |
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Preference number: 2 (lower is better) Translates to: GEGNGGVETMTKGALNTLNAEPQ*LSIQSS Trigger: TGAGGATTGTATTGATAACCACTGGGGTTCCGCATT...GAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR GCA 90 bp | CGCCGAGGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATCTTCAAATAAATAGTTaGTTCACAAAAGCAGAGGTC | + |
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Preference number: 2 (lower is better) Translates to: RRGEGNGGVETMTKGALNLQINS*FTKAEV Trigger: GACCTCTGCTTTTGTGAAGCAACTATTTATTTGAAG...ATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCCTCTGGGATCGACCTTACACTGGCCCCAATTAGAAGTTCAAAAACAAAAATCAGGCTTCAACTGCTaGTTTTTCACCTCTGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: QPLGSTLHWPQLEVQKQKSGFNC*FFTSGV Trigger: CACCCCAGAGGTGAAAAATCAGCAGTTGAAGCCTGA...TTTTTGTTTTTGAACTTCTAATTGGGGCCAGTGTAAGGTCGATCCCAGAGGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCCTCTGGGATCGACCTTACACTGGCCCCAATTAGAAGTTCAAAAACAAAAATTGTTCCTGCTTCAATaGGGAACCCCAGTGGTTATC | + |
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Preference number: 2 (lower is better) Translates to: QPLGSTLHWPQLEVQKQKLFLLQ*GTPVVI Trigger: GATAACCACTGGGGTTCCGCATTGAAGCAGGAACAA...TTTTTGTTTTTGAACTTCTAATTGGGGCCAGTGTAAGGTCGATCCCAGAGGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCCTCTGGGATCGACCTTACACTGGCCCCAATTAGAAGTTCAAAAACAAAAAAGCCTGTGTTTACCATaGGCTGGGTTCACTGTAGTA | + |
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Preference number: 2 (lower is better) Translates to: QPLGSTLHWPQLEVQKQKSLCLP*AGFTVV Trigger: TACTACAGTGAACCCAGCCCATGGTAAACACAGGCT...TTTTTGTTTTTGAACTTCTAATTGGGGCCAGTGTAAGGTCGATCCCAGAGGCTG 46% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCCTCTGGGATCGACCTTACACTGGCCCCAATTAGAAGTTCAAAAACAAAAAGCACAATATGTGATGTaGCACACACATCGTATGTGT | + |
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Preference number: 2 (lower is better) Translates to: QPLGSTLHWPQLEVQKQKAQYVM*HTHRMC Trigger: ACACATACGATGTGTGTGTCACATCACATATTGTGC...TTTTTGTTTTTGAACTTCTAATTGGGGCCAGTGTAAGGTCGATCCCAGAGGCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR CAA 90 bp | AAAATGAATATTGGAACACACCCGCAGCAAACACTGTACATAGACTaGAGGCAGATGCCTCTAACACAACACATATACAGGTTCTTGATC | + |
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Preference number: 2 (lower is better) Translates to: KMNIGTHPQQTLYID*RQMPLTQHIYRFLI Trigger: GATCAAGAACCTGTATATGTGTTGTGTTAGAGGCATCTGCCTCAAGTCTATGTACAGTGTTTGCTGCGGGTGTGTTCCAATATTCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR TCA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAACTCCATTTCCAAGGCTaGGTAGCTATTCCCAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKLHFQG*VAIPSK Trigger: CTTACTGGGAATAGCTACTCAGCCTTGGAAATGGAG...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR CAA 90 bp | TGCAACAAGAAGAGTGCACAAACATTTAAGGGTCAACACCCCAGATaGCTCTTTACAAAACTGAGTATTAGCCTGACATCATTCTGTATC | + |
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Preference number: 2 (lower is better) Translates to: CNKKSAQTFKGQHPR*LFTKLSISLTSFCI Trigger: GATACAGAATGATGTCAGGCTAATACTCAGTTTTGTAAAGAGCAATCTGGGGTGTTGACCCTTAAATGTTTGTGCACTCTTCTTGTTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR CAA 90 bp | ACATCTATAAATACTAGTATCCGCATGAATGAAAACACCCTGGCTTaGGTATGGCTACAGAAATCCATCTGGAAATTATTCAAAAGGACG | + |
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Preference number: 2 (lower is better) Translates to: TSINTSIRMNENTLA*VWLQKSIWKLFKRT Trigger: CGTCCTTTTGAATAATTTCCAGATGGATTTCTGTAGCCATACCAAAGCCAGGGTGTTTTCATTCATGCGGATACTAGTATTTATAGATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR TCA 72 bp | GACGCCGAGGAGAAGGCAATGGCGGAGTCGAGACTATaGCTAAGGGCGCCCTCAATACCCTCAAAAGTCAGA | + |
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Preference number: 3 (lower is better) Translates to: DAEEKAMAESRL*LRAPSIPSKVR Trigger: TCTGACTTTTGAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGGCGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR CAA 90 bp | TCACCACTGAGGCCTGTCAGGCTTCAACTGCTGATTTTTCACCTCTGGGGTGACCATAGCAGTCGGGGATaGGAGGGCAGAGAAGAAATA | + |
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Preference number: 3 (lower is better) Translates to: SPLRPVRLQLLIFHLWGDHSSRG*EGREEI Trigger: TATTTCTTCTCTGCCCTCCAATCCCCGACTGCTATG...GTCACCCCAGAGGTGAAAAATCAGCAGTTGAAGCCTGACAGGCCTCAGTGGTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR CAA 90 bp | TCACCACTGAGGCCTGTCAGGCTTCAACTGCTGATTTTTCACCTCTGGGGTGACAAAAGACTGACAAAGTaGGAAGCATCCGGCCACAAA | + |
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Preference number: 3 (lower is better) Translates to: SPLRPVRLQLLIFHLWGDKRLTK*EASGHK Trigger: TTTGTGGCCGGATGCTTCCAACTTTGTCAGTCTTTT...GTCACCCCAGAGGTGAAAAATCAGCAGTTGAAGCCTGACAGGCCTCAGTGGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR TCA 72 bp | AATTCATCTGGTGCCCTGGGGTCTAGTGAGAAACAATaGCCTTTTGGAATAATGGCCACCCAGGCTAGAAGC | + |
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Preference number: 3 (lower is better) Translates to: NSSGALGSSEKQ*PFGIMATQARS Trigger: GCTTCTAGCCTGGGTGGCCATTATTCCAAAAGGTCATTGTTTCTCACTAGACCCCAGGGCACCAGATGAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR CAA 90 bp | GGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGCAGAGAAGAAAAACCCCAGGCAACTTTaGATAACAGCGTCATTTATC | + |
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Preference number: 3 (lower is better) Translates to: GFTVVNIIAVGDWRAEKKNPRQL*ITASFI Trigger: GATAAATGACGCTGTTATCAAAAGTTGCCTGGGGTT...TTTCTTCTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR GCA 72 bp | CCACAGAGAAGGCCAGAAAAAGAGGCAATTTGTTCCTaGTTCAATGCGGAACCCCAGTGGTTATCAATACAA | + |
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Preference number: 3 (lower is better) Translates to: PQRRPEKEAICS*FNAEPQWLSIQ Trigger: TTGTATTGATAACCACTGGGGTTCCGCATTGAAGCAGGAACAAATTGCCTCTTTTTCTGGCCTTCTCTGTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR GCA 72 bp | CAAAAGTGCCCATACCCTGGTCTTCAAATAAATAGTTaGTTCACAAAAGCAGAGGTCCCACAGAGAAGGCCA | + |
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Preference number: 3 (lower is better) Translates to: QKCPYPGLQINS*FTKAEVPQRRP Trigger: TGGCCTTCTCTGTGGGACCTCTGCTTTTGTGAAGCAACTATTTATTTGAAGACCAGGGTATGGGCACTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR-3UTR CAA 90 bp | CAGCCTCTGGGATCGACCTTACACTGGCCCCAATTAGAAGTTCAAAAACAAAAAACACTGTACATAGACTaGAGGCAGATGCCTCTAACA | + |
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Preference number: 3 (lower is better) Translates to: QPLGSTLHWPQLEVQKQKTLYID*RQMPLT Trigger: TGTTAGAGGCATCTGCCTCAAGTCTATGTACAGTGT...TTTTTGTTTTTGAACTTCTAATTGGGGCCAGTGTAAGGTCGATCCCAGAGGCTG 44% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR CCA 72 bp | ACACAACACATATACAGGTTCTTGATCAAAATGGTCTaGACCAACCTTTTTCAAAGTAATCACCTGCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: TQHIYRFLIKMV*TNLFQSNHLQE Trigger: TTCCTGCAGGTGATTACTTTGAAAAAGGTTGGTCCAGACCATTTTGATCAAGAACCTGTATATGTGTTGTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | TGGGCTGGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGCAGAGGGCTGCTTCTGTTCCTaGTCACCACTGAGGCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: WAGFTVVNIIAVGDWRAEGCFCS*SPLRPV Trigger: GACAGGCCTCAGTGGTGACCAGGAACAGAAGCAGCC...CTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCCAGCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | GGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATACCCTCTTGCAGATCAGCCTCTaGGATCGACCTTACACTGGC | + |
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Preference number: 4 (lower is better) Translates to: GEGNGGVETMTKGALNTLLQISL*DRPYTG Trigger: GCCAGTGTAAGGTCGATCCCAGAGGCTGATCTGCAA...GAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR GCA 90 bp | CGCCGAGGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATGAATATCCCTTCCTCTaGCCTAACTTCCTTTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: RRGEGNGGVETMTKGALNEYPFL*PNFLSP Trigger: TGGGGAAAGGAAGTTAGGGCAGAGGAAGGGATATTC...ATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR TCA 90 bp | GGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATACCCTCCTCCATTTCCAAGGCTaGGTAGCTATTCCCAGTAAG | + |
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Preference number: 4 (lower is better) Translates to: GEGNGGVETMTKGALNTLLHFQG*VAIPSK Trigger: CTTACTGGGAATAGCTACTCAGCCTTGGAAATGGAG...GAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | CAAAGTCTGTCTTCCCCTTTAGTAAGGCTTCTGCCCACCACAGAAGTACCCCCACCGAGGAGAAGGCAATaGCGGAGTCGAGACTATGAC | + |
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Preference number: 4 (lower is better) Translates to: QSLSSPLVRLLPTTEVPPPRRRQ*RSRDYD Trigger: GTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGG...TGGGGGTACTTCTGTGGTGGGCAGAAGCCTTACTAAAGGGGAAGACAGACTTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | GGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATACCCTCATTCATCTGGTGCCCTaGGGTCTAGTGAGAAACAAT | + |
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Preference number: 4 (lower is better) Translates to: GEGNGGVETMTKGALNTLIHLVP*GLVRNN Trigger: ATTGTTTCTCACTAGACCCCAGGGCACCAGATGAAT...GAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR TCA 90 bp | GGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATACCCTCATACTAGTATCCGCATaGATGAAAACACCCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: GEGNGGVETMTKGALNTLILVSA*MKTPWL Trigger: AAGCCAGGGTGTTTTCATTCATGCGGATACTAGTAT...GAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | TGGGCTGGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGCAGAGATAGCAGTCGGGGATTaGAGGGCAGAGAAGAAATAC | + |
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Preference number: 4 (lower is better) Translates to: WAGFTVVNIIAVGDWRAEIAVGD*RAEKKY Trigger: GTATTTCTTCTCTGCCCTCCAATCCCCGACTGCTAT...CTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCCAGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR GCA 90 bp | GGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGCAGAGAAGAAAAAGCGAGGGAAGTCCTaGCTCACAGTCAAGGCTAAC | + |
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Preference number: 4 (lower is better) Translates to: GFTVVNIIAVGDWRAEKKKRGKS*LTVKAN Trigger: GTTAGCCTTGACTGTGAGGCAGGACTTCCCTCGCTT...TTTCTTCTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | CAAAGTCTGTCTTCCCCTTTAGTAAGGCTTCTGCCCACCACAGAAGTACCCCCAAGCCTGTGTTTACCATaGGCTGGGTTCACTGTAGTA | + |
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Preference number: 4 (lower is better) Translates to: QSLSSPLVRLLPTTEVPPSLCLP*AGFTVV Trigger: TACTACAGTGAACCCAGCCCATGGTAAACACAGGCT...TGGGGGTACTTCTGTGGTGGGCAGAAGCCTTACTAAAGGGGAAGACAGACTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR TCA 90 bp | GGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGCAGAGAAGAAATCGCAGGGCACTACATaGAAACCAACAGCTGCACAA | + |
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Preference number: 4 (lower is better) Translates to: GFTVVNIIAVGDWRAEKKSQGTT*KPTAAQ Trigger: TTGTGCAGCTGTTGGTTTTCATGTAGTGCCCTGCGA...TTTCTTCTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR GCA 90 bp | CAAAGTCTGTCTTCCCCTTTAGTAAGGCTTCTGCCCACCACAGAAGTACCCCCACTGGAGGAAGAGTTCTaGATTCCGTATCCTCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: QSLSSPLVRLLPTTEVPPLEEEF*IPYPLF Trigger: AAAGAGAGGATACGGAATGCAGAACTCTTCCTCCAG...TGGGGGTACTTCTGTGGTGGGCAGAAGCCTTACTAAAGGGGAAGACAGACTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | TGGGCTGGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGCAGAGGTGTTTACCATGGGCTaGGTTCACTGTAGTAAACAT | + |
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Preference number: 4 (lower is better) Translates to: WAGFTVVNIIAVGDWRAEVFTMG*VHCSKH Trigger: ATGTTTACTACAGTGAACCCAGCCCATGGTAAACAC...CTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCCAGCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | CGCCGAGGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATCTACAGAAATCCATCTaGAAATTATTCAAAAGGACG | + |
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Preference number: 4 (lower is better) Translates to: RRGEGNGGVETMTKGALNLQKSI*KLFKRT Trigger: CGTCCTTTTGAATAATTTCCAGATGGATTTCTGTAG...ATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR TCA 90 bp | CAAAGTCTGTCTTCCCCTTTAGTAAGGCTTCTGCCCACCACAGAAGTACCCCCACAAATACATGTAGCTTaGTTTGCAGATCAGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: QSLSSPLVRLLPTTEVPPQIHVA*FADQPL Trigger: CAGAGGCTGATCTGCAAATCAAGCTACATGTATTTG...TGGGGGTACTTCTGTGGTGGGCAGAAGCCTTACTAAAGGGGAAGACAGACTTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR GCA 90 bp | GGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATACCCTCCTTCAAATAAATAGTTaGTTCACAAAAGCAGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: GEGNGGVETMTKGALNTLLQINS*FTKAEV Trigger: GACCTCTGCTTTTGTGAAGCAACTATTTATTTGAAG...GAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR TCA 90 bp | CAAAGTCTGTCTTCCCCTTTAGTAAGGCTTCTGCCCACCACAGAAGTACCCCCAAAAGCTAAAGAAATGTaGGAAGGAAGCCAAACCCAA | + |
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Preference number: 4 (lower is better) Translates to: QSLSSPLVRLLPTTEVPPKAKEM*EGSQTQ Trigger: TTGGGTTTGGCTTCCTTCTCACATTTCTTTAGCTTT...TGGGGGTACTTCTGTGGTGGGCAGAAGCCTTACTAAAGGGGAAGACAGACTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | GGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGCAGAGAAGAAAGAAACAATGACCTTTTaGAATAATGGCCACCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: GFTVVNIIAVGDWRAEKKETMTF*NNGHPG Trigger: GCCTGGGTGGCCATTATTCCAAAAGGTCATTGTTTC...TTTCTTCTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | CAAAGTCTGTCTTCCCCTTTAGTAAGGCTTCTGCCCACCACAGAAGTACCCCCAACTCTTTGGACAAATTaGTGTAACAGTAAGCACCGA | + |
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Preference number: 4 (lower is better) Translates to: QSLSSPLVRLLPTTEVPPTLWTN*CNSKHR Trigger: TCGGTGCTTACTGTTACACCAATTTGTCCAAAGAGT...TGGGGGTACTTCTGTGGTGGGCAGAAGCCTTACTAAAGGGGAAGACAGACTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR CAA 72 bp | ATTGGAACACACCCGCAGCAAACACTGTACATAGACTaGAGGCAGATGCCTCTAACACAACACATATACAGG | + |
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Preference number: 4 (lower is better) Translates to: IGTHPQQTLYID*RQMPLTQHIYR Trigger: CCTGTATATGTGTTGTGTTAGAGGCATCTGCCTCAAGTCTATGTACAGTGTTTGCTGCGGGTGTGTTCCAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR TCA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAAGCGGAGTCGAGACTATaGCTAAGGGCGCCCTCAATA | + |
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Preference number: 4 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKAESRL*LRAPSI Trigger: TATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGC...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR TCA 90 bp | CAGCCTCTGGGATCGACCTTACACTGGCCCCAATTAGAAGTTCAAAAACAAAAAACATATACAGGTTCTTaGTCAAAATGGTCTGGACCA | + |
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Preference number: 4 (lower is better) Translates to: QPLGSTLHWPQLEVQKQKTYTGS*SKWSGP Trigger: TGGTCCAGACCATTTTGATCAAGAACCTGTATATGT...TTTTTGTTTTTGAACTTCTAATTGGGGCCAGTGTAAGGTCGATCCCAGAGGCTG 42% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | GGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGCAGAGAAGAAATTGATCAAAATGGTCTaGACCAACCTTTTTCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: GFTVVNIIAVGDWRAEKKLIKMV*TNLFQS Trigger: ACTTTGAAAAAGGTTGGTCCAGACCATTTTGATCAA...TTTCTTCTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR TCA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAAAAAGTCACCCAGTCCTaGACACAGGGTCTTATACAC | + |
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Preference number: 4 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKKVTQS*TQGLIH Trigger: GTGTATAAGACCCTGTGTTCAGGACTGGGTGACTTT...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 41% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR GCA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAATTGTTCCTGCTTCAATaGGGAACCCCAGTGGTTATC | + |
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Preference number: 4 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKLFLLQ*GTPVVI Trigger: GATAACCACTGGGGTTCCGCATTGAAGCAGGAACAA...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR GCA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAAGAGAGAAGGCAAAAGTaGCCATACCCTGGTCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKERRQK*PYPGLQ Trigger: TTGAAGACCAGGGTATGGGCACTTTTGCCTTCTCTC...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR TCA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAACAAGCAGAGGTAAAATaGATATTGGAACACACCCGC | + |
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Preference number: 4 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKQAEVK*ILEHTR Trigger: GCGGGTGTGTTCCAATATTCATTTTACCTCTGCTTG...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CCA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAAGGATCGACCTTACACTaGCCCCAATTAGAAGTTCAA | + |
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Preference number: 4 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKGSTLH*PQLEVQ Trigger: TTGAACTTCTAATTGGGGCCAGTGTAAGGTCGATCC...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR CAA 72 bp | AAGAGTGCACAAACATTTAAGGGTCAACACCCCAGATaGCTCTTTACAAAACTGAGTATTAGCCTGACATCA | + |
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Preference number: 4 (lower is better) Translates to: KSAQTFKGQHPR*LFTKLSISLTS Trigger: TGATGTCAGGCTAATACTCAGTTTTGTAAAGAGCAATCTGGGGTGTTGACCCTTAAATGTTTGTGCACTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR TCA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAAGCACAATATGTGATGTaGCACACACATCGTATGTGT | + |
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Preference number: 4 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKAQYVM*HTHRMC Trigger: ACACATACGATGTGTGTGTCACATCACATATTGTGC...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| 3UTR CAA 72 bp | AATACTAGTATCCGCATGAATGAAAACACCCTGGCTTaGGTATGGCTACAGAAATCCATCTGGAAATTATTC | + |
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Preference number: 4 (lower is better) Translates to: NTSIRMNENTLA*VWLQKSIWKLF Trigger: GAATAATTTCCAGATGGATTTCTGTAGCCATACCAAAGCCAGGGTGTTTTCATTCATGCGGATACTAGTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS CCA 90 bp | CTGAGCTGGTTGGTCTCTTCTATGAACTGCGAGTCAGAGCAGCCTTaGAATGCCTTACCAGAGTCAGGCCACGAAAAGCCACGGGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: LSWLVSSMNCESEQP*NALPESGHEKPREQ Trigger: CTGCTCCCGTGGCTTTTCGTGGCCTGACTCTGGTAAGGCATTCCAAGGCTGCTCTGACTCGCAGTTCATAGAAGAGACCAACCAGCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541280.1 |
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| CDS GCA 90 bp | CTGGTTGGTCTCTTCTATGAACTGCGAGTCAGAGCAGCCTTGGAATaGCTTACCAGAGTCAGGCCACGAAAAGCCACGGGAGCAGAACTG | + |
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Preference number: 5 (lower is better) Translates to: LVGLFYELRVRAALE*LTRVRPRKATGAEL Trigger: CAGTTCTGCTCCCGTGGCTTTTCGTGGCCTGACTCTGGTAAGGCATTCCAAGGCTGCTCTGACTCGCAGTTCATAGAAGAGACCAACCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541280.1 |
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| CDS-3UTR CAA 90 bp | GGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATACCCTCCATAGCAGTCGGGGATaGGAGGGCAGAGAAGAAATA | + |
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Preference number: 5 (lower is better) Translates to: GEGNGGVETMTKGALNTLHSSRG*EGREEI Trigger: TATTTCTTCTCTGCCCTCCAATCCCCGACTGCTATG...GAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | CGCCGAGGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATGTAATTTCGTTCCACTaGTTCAGTTTCCAGCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: RRGEGNGGVETMTKGALNVISFH*FSFQLE Trigger: CTCCAGCTGGAAACTGAACAAGTGGAACGAAATTAC...ATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCCTCGGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | TGGGCTGGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGCAGAGCTCACCCAGATCTCATaGGCTCCTACAGAACTGATC | + |
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Preference number: 5 (lower is better) Translates to: WAGFTVVNIIAVGDWRAELTQIS*APTELI Trigger: GATCAGTTCTGTAGGAGCCAATGAGATCTGGGTGAG...CTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCCAGCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | GGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATACCCTCAACCCCAGGCAACTTTaGATAACAGCGTCATTTATC | + |
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Preference number: 5 (lower is better) Translates to: GEGNGGVETMTKGALNTLNPRQL*ITASFI Trigger: GATAAATGACGCTGTTATCAAAAGTTGCCTGGGGTT...GAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | GGAGAAGGCAATGGCGGAGTCGAGACTATGACTAAGGGCGCCCTCAATACCCTCCACATATACAGGTTCTaGATCAAAATGGTCTGGACC | + |
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Preference number: 5 (lower is better) Translates to: GEGNGGVETMTKGALNTLHIYRF*IKMVWT Trigger: GGTCCAGACCATTTTGATCAAGAACCTGTATATGTG...GAGGGTATTGAGGGCGCCCTTAGTCATAGTCTCGACTCCGCCATTGCCTTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | CAAAGTCTGTCTTCCCCTTTAGTAAGGCTTCTGCCCACCACAGAAGTACCCCCAGAAAACACCCTGGCTTaGGTATGGCTACAGAAATCC | + |
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Preference number: 5 (lower is better) Translates to: QSLSSPLVRLLPTTEVPPENTLA*VWLQKS Trigger: GGATTTCTGTAGCCATACCAAAGCCAGGGTGTTTTC...TGGGGGTACTTCTGTGGTGGGCAGAAGCCTTACTAAAGGGGAAGACAGACTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | CAAAGTCTGTCTTCCCCTTTAGTAAGGCTTCTGCCCACCACAGAAGTACCCCCAGGAAAGAGTTTAAACTaGGAAATTCATCTGGTGCCC | + |
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Preference number: 5 (lower is better) Translates to: QSLSSPLVRLLPTTEVPPGKSLN*EIHLVP Trigger: GGGCACCAGATGAATTTCCAAGTTTAAACTCTTTCC...TGGGGGTACTTCTGTGGTGGGCAGAAGCCTTACTAAAGGGGAAGACAGACTTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS GCA 90 bp | AATGCCTTACCAGAGTCAGGCCACGAAAAGCCACGGGAGCAGAACTaGCTAGGACTTGGCTTTAGAAAGCCAGTAATACTTAAAAATCCT | + |
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Preference number: 5 (lower is better) Translates to: NALPESGHEKPREQN*LGLGFRKPVILKNP Trigger: AGGATTTTTAAGTATTACTGGCTTTCTAAAGCCAAGTCCTAGGCAGTTCTGCTCCCGTGGCTTTTCGTGGCCTGACTCTGGTAAGGCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000541280.1 |
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| CDS-3UTR CAA 90 bp | CAAAGTCTGTCTTCCCCTTTAGTAAGGCTTCTGCCCACCACAGAAGTACCCCCACTCCAGTCAGTTCCATaGTCAGCTTTTCATTTTCAA | + |
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Preference number: 5 (lower is better) Translates to: QSLSSPLVRLLPTTEVPPLQSVP*SAFHFQ Trigger: TTGAAAATGAAAAGCTGACAATGGAACTGACTGGAG...TGGGGGTACTTCTGTGGTGGGCAGAAGCCTTACTAAAGGGGAAGACAGACTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | GGGTTCACTGTAGTAAACATCATAGCAGTCGGGGATTGGAGGGCAGAGAAGAAAGGAGATGCTGGTCTCTaGGGTGACTTAAGCTTATTT | + |
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Preference number: 5 (lower is better) Translates to: GFTVVNIIAVGDWRAEKKGDAGL*GDLSLF Trigger: AAATAAGCTTAAGTCACCCAAGAGACCAGCATCTCC...TTTCTTCTCTGCCCTCCAATCCCCGACTGCTATGATGTTTACTACAGTGAACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAAAAAAGACTGACAAAGTaGGAAGCATCCGGCCACAAA | + |
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Preference number: 5 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKKRLTK*EASGHK Trigger: TTTGTGGCCGGATGCTTCCAACTTTGTCAGTCTTTT...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 40% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAAACACTGTACATAGACTaGAGGCAGATGCCTCTAACA | + |
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Preference number: 5 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKTLYID*RQMPLT Trigger: TGTTAGAGGCATCTGCCTCAAGTCTATGTACAGTGT...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAAGGTCAACACCCCAGATaGCTCTTTACAAAACTGAGT | + |
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Preference number: 5 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKGQHPR*LFTKLS Trigger: ACTCAGTTTTGTAAAGAGCAATCTGGGGTGTTGACC...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS-3UTR CAA 90 bp | CTGTTTAGGAGGACAAAACACATGATCATTGAAAAACTCCACCTTCAATGGAAAACAAATACATGTAGCTaGATTTGCAGATCAGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: LFRRTKHMIIEKLHLQWKTNTCS*ICRSAS Trigger: AGAGGCTGATCTGCAAATCAAGCTACATGTATTTGT...TTTCCATTGAAGGTGGAGTTTTTCAATGATCATGTGTTTTGTCCTCCTAAACAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000543473.2 |
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| CDS CAA 90 bp | ACTGAGCTGGTTGGTCTCTTCTATGAACTGCGAGTCAGAGCAGCCTaGGAATGCCTTACCAGAGTCAGGCCACGAAAAGCCACGGGAGCA | + |
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Preference number: 6 (lower is better) Translates to: TELVGLFYELRVRAA*ECLTRVRPRKATGA Trigger: TGCTCCCGTGGCTTTTCGTGGCCTGACTCTGGTAAGGCATTCCAAGGCTGCTCTGACTCGCAGTTCATAGAAGAGACCAACCAGCTCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541280.1 |
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| CDS GCA 72 bp | CTCTTCTATGAACTGCGAGTCAGAGCAGCCTTGGAATaGCTTACCAGAGTCAGGCCACGAAAAGCCACGGGA | + |
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Preference number: 6 (lower is better) Translates to: LFYELRVRAALE*LTRVRPRKATG Trigger: TCCCGTGGCTTTTCGTGGCCTGACTCTGGTAAGGCATTCCAAGGCTGCTCTGACTCGCAGTTCATAGAAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541280.1 |
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| CDS GCA 72 bp | CCAGAGTCAGGCCACGAAAAGCCACGGGAGCAGAACTaGCTAGGACTTGGCTTTAGAAAGCCAGTAATACTT | + |
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Preference number: 6 (lower is better) Translates to: PESGHEKPREQN*LGLGFRKPVIL Trigger: AAGTATTACTGGCTTTCTAAAGCCAAGTCCTAGGCAGTTCTGCTCCCGTGGCTTTTCGTGGCCTGACTCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541280.1 |
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