RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ST3GAL1 (Homo sapiens)

Ensembl gene IDs: ENSG00000008513

Ensembl transcript IDs: ENST00000399640.3, ENST00000518298.5, ENST00000519435.5, ENST00000519924.5, ENST00000520020.5, ENST00000521180.5, ENST00000521627.1, ENST00000522204.1, ENST00000522285.1, ENST00000522652.6, ENST00000523634.1, ENST00000523854.5, ENST00000523855.1, ENST00000648219.1

Found 288 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCTGCCCCTCCAAGCTCCGGGATGGAACGGCTCCAGCAAGATGCTaGGGCTGGAAATGCAGAGGTGTGACAGTGCGTCCATCCTCAGCC +
Preference number: 1 (lower is better)
Translates to: GCPSKLRDGTAPARC*GWKCRGVTVRPSSA
Trigger: GGCTGAGGATGGACGCACTGTCACACCTCTGCATTTCCAGCCCCAGCATCTTGCTGGAGCCGTTCCATCCCGGAGCTTGGAGGGGCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
3UTR-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAGCGCCAACACCGCCTaGCACGTCTCTGTGCTGGAG +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCSANTA*HVSVLE
Trigger: CTCCAGCACAGAGACGTGCCAGGCGGTGTTGGCGCT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCTCCAAGCTCCGGGATaGAACGGCTCCAGCAAGATG +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCLQAPG*NGSSKM
Trigger: CATCTTGCTGGAGCCGTTCCATCCCGGAGCTTGGAG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCTCCAAGCTCCGGGATaGAACGGCTCCAGCAAGATG +
Preference number: 2 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLLQAPG*NGSSKM
Trigger: CATCTTGCTGGAGCCGTTCCATCCCGGAGCTTGGAG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
3UTR-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGGAAATGCAGAGGTGTaGCAGTGCGTCCATCCTCAG +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCGNAEV*QCVHPQ
Trigger: CTGAGGATGGACGCACTGTCACACCTCTGCATTTCC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGGAAATGCAGAGGTGTaGCAGTGCGTCCATCCTCAG +
Preference number: 2 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLGNAEV*QCVHPQ
Trigger: CTGAGGATGGACGCACTGTCACACCTCTGCATTTCC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
3UTR-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGGGGCTACAAGTGTGTaGCACCGTGCCTGGCTAATT +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCGATSV*HRAWLI
Trigger: AATTAGCCAGGCACGGTGGCACACACTTGTAGCCCC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCATGCTCTGCCACGCTaGCAGAGCTTAGTGACCTTG +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCHALPR*QSLVTL
Trigger: CAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTACTGCTGGGTGGTGTTaGGTATCCTCAGAGCTTCGT +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCTAGWC*VSSELR
Trigger: ACGAAGCTCTGAGGATACTCAACACCACCCAGCAGT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTATGTACGTTCCATTCTaGCGCACTGCTGGGTGGTGT +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCMYVPF*RTAGWC
Trigger: ACACCACCCAGCAGTGCGTCAGAATGGAACGTACAT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCGCCACTCAAGTCTCTaGCCATCTTCCTGGGAAACT +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCRHSSL*PSSWET
Trigger: AGTTTCCCAGGAAGATGGGCAGAGACTTGAGTGGCG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCTCTGCCCATCTTCCTaGGAAACTGTCCTGTCTCTC +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCLCPSS*ETVLSL
Trigger: GAGAGACAGGACAGTTTCCCAGGAAGATGGGCAGAG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAAGCGCCAACACCGCCTaGCACGTCTCTGTGCTGGAG +
Preference number: 2 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLSANTA*HVSVLE
Trigger: CTCCAGCACAGAGACGTGCCAGGCGGTGTTGGCGCT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGTGAGCCACGGCACCTaGCCTCAAGTTTCTGTGAAA +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCVSHGT*PQVSVK
Trigger: TTTCACAGAAACTTGAGGCCAGGTGCCGTGGCTCAC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAAAGGCACATGGAAGTaGTCAGATCCGCTCTCGCCA +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCKGTWK*SDPLSP
Trigger: TGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTGGGGAGTAAGAAGATaGGGTATGTGGCAGTTACCA +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCWGVRR*GMWQLP
Trigger: TGGTAACTGCCACATACCTCATCTTCTTACTCCCCA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACTCCAAGCTCCGGGATaGAACGGCTCCAGCAAGATG +
Preference number: 2 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLLQAPG*NGSSKM
Trigger: CATCTTGCTGGAGCCGTTCCATCCCGGAGCTTGGAG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGGAAATGCAGAGGTGTaGCAGTGCGTCCATCCTCAG +
Preference number: 2 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLGNAEV*QCVHPQ
Trigger: CTGAGGATGGACGCACTGTCACACCTCTGCATTTCC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR GCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGGGGCTACAAGTGTGTaGCACCGTGCCTGGCTAATT +
Preference number: 2 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLGATSV*HRAWLI
Trigger: AATTAGCCAGGCACGGTGGCACACACTTGTAGCCCC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCCAACAGAGCCAGGGTaGAAACAATGTCAGTTGAAT +
Preference number: 2 (lower is better)
Translates to: QTWHATSGDSCEWPEATCPTEPG*KQCQLN
Trigger: ATTCAACTGACATTGTTTGCACCCTGGCTCTGTTGG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAAGCCTCCCTAGTAGCTaGGGCTACAAGTGTGTGCCA +
Preference number: 2 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLSLPSS*GYKCVP
Trigger: TGGCACACACTTGTAGCCCCAGCTACTAGGGAGGCT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAGCAAGCAGGGCCGCTaGTGGGGGTCCCTTTTCCCA +
Preference number: 2 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGSKQGR*WGSLFP
Trigger: TGGGAAAAGGGACCCCCACCAGCGGCCCTGCTTGCT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAACAGGTTCCAAGACATaGTCTGCCACGCTGGCAGAG +
Preference number: 2 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGTGSKT*SATLAE
Trigger: CTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGACATGCTCTGCCACGCTaGCAGAGCTTAGTGACCTTG +
Preference number: 2 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGHALPR*QSLVTL
Trigger: CAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATG...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAACTGCTGGGTGGTGTTaGGTATCCTCAGAGCTTCGT +
Preference number: 2 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGTAGWC*VSSELR
Trigger: ACGAAGCTCTGAGGATACTCAACACCACCCAGCAGT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGACTCTGCCCATCTTCCTaGGAAACTGTCCTGTCTCTC +
Preference number: 2 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGLCPSS*ETVLSL
Trigger: GAGAGACAGGACAGTTTCCCAGGAAGATGGGCAGAG...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGGCAGTTACCATTCCTaGGATGTCCTTGACCCAGAC +
Preference number: 2 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGGSYHS*DVLDPD
Trigger: GTCTGGGTCAAGGACATCCCAGGAATGGTAACTGCC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGATCCATTCTGACGCACTaGTGGGTGGTGTTGAGTATC +
Preference number: 2 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGSILTH*WVVLSI
Trigger: GATACTCAACACCACCCAGCAGTGCGTCAGAATGGA...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGACCAACAGAGCCAGGGTaGAAACAATGTCAGTTGAAT +
Preference number: 2 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGPTEPG*KQCQLN
Trigger: ATTCAACTGACATTGTTTGCACCCTGGCTCTGTTGG...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAAATACAAAGGCACATaGAAGTGGTCAGATCCGCTC +
Preference number: 2 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGKYKGT*KWSDPL
Trigger: GAGCGGATCTGACCACTTCCATGTGCCTTTGTATTT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
3UTR-3UTR CAA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTATTTAGTGTGTGGAGGTaGAACCTTTCCCAGCGTCTC +
Preference number: 3 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLFSVWR*NLSQRL
Trigger: GAGACGCTGGGAAAGGTTCAACCTCCACACACTAAA...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTCCGCCGGCGGAGGCTaGAGCCGAGGAAGCGAGGAG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSAGGG*SRGSEE
Trigger: CTCCTCGCTTCCTCGGCTCCAGCCTCCGCCGGCGGA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000399640.3
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCTGCACGGGAGGGTGTaGGAAGGCCACCCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLLHGRV*EGHPGS
Trigger: GCTGCCTGGGTGGCCTTCTCACACCCTCCCGTGCAG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCTGCACGGGAGGGTGTaGGAAGGCCACCCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCLHGRV*EGHPGS
Trigger: GCTGCCTGGGTGGCCTTCTCACACCCTCCCGTGCAG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGCCGAGAGCTTGCGCTaGCCGATGCAGTGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLAESLR*PMQWVQ
Trigger: CTGCACCCACTGCATCGGGCAGCGCAAGCTCTCGGC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCGCTGTCCTCTCCCGTaGCTGTCACGCTCCACTCCC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLRCPLP*LSRSTP
Trigger: GGGAGTGGAGCGTGACAGGCACGGGAGAGGACAGCG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCGCTGCCCGATGCAGTaGGTGCAGGTGCAAGGCCTG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCRCPMQ*VQVQGL
Trigger: CAGGCCTTGCACCTGCACCCACTGCATCGGGCAGCG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCGCTGCCCGATGCAGTaGGTGCAGGTGCAAGGCCTG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLRCPMQ*VQVQGL
Trigger: CAGGCCTTGCACCTGCACCCACTGCATCGGGCAGCG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGACCCCTCTGCTCCCTaGCTGAATGCAGGGCCAGTC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLDPSAP*LNAGPV
Trigger: GACTGGCCCTGCATTCAGGCAGGGAGCAGAGGGGTC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGACCCCTCTGCTCCCTaGCTGAATGCAGGGCCAGTC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCDPSAP*LNAGPV
Trigger: GACTGGCCCTGCATTCAGGCAGGGAGCAGAGGGGTC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGGTGGCCTCCCACGATaGGTAGCAGGAACTCCCTCC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLGGLPR*VAGTPS
Trigger: GGAGGGAGTTCCTGCTACCCATCGTGGGAGGCCACC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGGTGGCCTCCCACGATaGGTAGCAGGAACTCCCTCC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCGGLPR*VAGTPS
Trigger: GGAGGGAGTTCCTGCTACCCATCGTGGGAGGCCACC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGGCTTCTTCTCCCGCTaGAGCCTCAGCCACCATCGG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCGFFSR*SLSHHR
Trigger: CCGATGGTGGCTGAGGCTCCAGCGGGAGAAGAAGCC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGGCTTCTTCTCCCGCTaGAGCCTCAGCCACCATCGG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLGFFSR*SLSHHR
Trigger: CCGATGGTGGCTGAGGCTCCAGCGGGAGAAGAAGCC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAGCGCCAACACCGCCTaGCACGTCTCTGTGCTGGAG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSANTA*HVSVLE
Trigger: CTCCAGCACAGAGACGTGCCAGGCGGTGTTGGCGCT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAGCAAGCAGGGCCGCTaGTGGGGGTCCCTTTTCCCA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSKQGR*WGSLFP
Trigger: TGGGAAAAGGGACCCCCACCAGCGGCCCTGCTTGCT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAGCAAGCAGGGCCGCTaGTGGGGGTCCCTTTTCCCA +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCSKQGR*WGSLFP
Trigger: TGGGAAAAGGGACCCCCACCAGCGGCCCTGCTTGCT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCCATCTTCGCAGTCCTaGTGGTGGCCTCCCACGATG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLPSSQS*WWPPTM
Trigger: CATCGTGGGAGGCCACCATCAGGACTGCGAAGATGG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGCTAGAGCTCGGCGCTaGGAGAGCACAGGAGAGTCA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLARARR*ESTGES
Trigger: TGACTCTCCTGTGCTCTCTCAGCGCCGAGCTCTAGC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAGTGATGAGGCTGGGTaGTGGGATCGCTTGACGGGC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCSDEAG*WDRLTG
Trigger: GCCCGTCAAGCGATCCCATCACCCAGCCTCATCACT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTGGAGGGCGAGGCCCTaGGACAGGCTAGGGTTAAAG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCWRARP*DRLGLK
Trigger: CTTTAACCCTAGCCTGTCTCAGGGCCTCGCCCTCCA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGCGGTCAGCAGCGGCTaGATGGTCTGGTTGAACCTC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLAVSSG*MVWLNL
Trigger: GAGGTTCAACCAGACCATGCAGCCGCTGCTGACCGC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGGTGCCAGTTCCCTTTaGTGTCTGCCCCGAAGCCGT +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCGASSL*CLPRSR
Trigger: ACGGCTTCGGGGCAGACAGCAAAGGGAACTGGCACC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGGTGCCAGTTCCCTTTaGTGTCTGCCCCGAAGCCGT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLGASSL*CLPRSR
Trigger: ACGGCTTCGGGGCAGACAGCAAAGGGAACTGGCACC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGCTCGACTTCACTCCTaGTGGGGGATGACCCCCAAC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCARLHS*WGMTPN
Trigger: GTTGGGGGTCATCCCCCAGCAGGAGTGAAGTCGAGC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGAGGATGCCGGTAGATaGGTATCGCCCGTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCEDAGR*VSPVPL
Trigger: CAAGGGCACGGGCGATACCCATCTACCGGCATCCTC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGAGGATGCCGGTAGATaGGTATCGCCCGTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLEDAGR*VSPVPL
Trigger: CAAGGGCACGGGCGATACCCATCTACCGGCATCCTC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAAGCAGGGCCGCTGGTaGGGGTCCCTTTTCCCAAGT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLKQGRW*GSLFPS
Trigger: ACTTGGGAAAAGGGACCCCCACCAGCGGCCCTGCTT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCCAGTCATCTTTAGCTaGGCAGTGGCCCCTCGAGGC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLPVIFS*AVAPRG
Trigger: GCCTCGAGGGGCCACTGCCCAGCTAAAGATGACTGG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGCCACCTGTGACCCATaGCTGATGTCCCCAAGTTCC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCATCDP*LMSPSS
Trigger: GGAACTTGGGGACATCAGTCATGGGTCACAGGTGGC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGCCACCTGTGACCCATaGCTGATGTCCCCAAGTTCC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLATCDP*LMSPSS
Trigger: GGAACTTGGGGACATCAGTCATGGGTCACAGGTGGC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACTGCACGGGAGGGTGTaGGAAGGCCACCCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLLHGRV*EGHPGS
Trigger: GCTGCCTGGGTGGCCTTCTCACACCCTCCCGTGCAG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTACAGGTGCTGGTTCCTaGTGGTGCATGGCTGGTGTC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCTGAGS*WCMAGV
Trigger: GACACCAGCCATGCACCATCAGGAACCAGCACCTGT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAAGACTCCCTCAGGTTaGCCGAGTTGCCCACAACGG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCKTPSG*PSCPQR
Trigger: CCGTTGTGGGCAACTCGGGCAACCTGAGGGAGTCTT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAAGACTCCCTCAGGTTaGCCGAGTTGCCCACAACGG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLKTPSG*PSCPQR
Trigger: CCGTTGTGGGCAACTCGGGCAACCTGAGGGAGTCTT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAGTGTCGAAACTGTCTaGCATAGTGGGCTCCGCCGG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCSVETV*HSGLRR
Trigger: CCGGCGGAGCCCACTATGCCAGACAGTTTCGACACT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000399640.3
ENST00000521180.5
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCGACTTCACTCCTGCTaGGGGATGACCCCCAACTGT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLRLHSC*GMTPNC
Trigger: ACAGTTGGGGGTCATCCCCCAGCAGGAGTGAAGTCG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTCCGGGATTTGGGCATaGAGGGGTTCGGAGGAGAAT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSGIWA*RGSEEN
Trigger: ATTCTCCTCCGAACCCCTTCATGCCCAAATCCCGGA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGAGGGAAACTGTCTCTaGCGTCCTCCTCCAACTGTG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLEGNCL*RPPPTV
Trigger: CACAGTTGGAGGAGGACGGCAGAGACAGTTTCCCTC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGTTCCCTTTGCTGTCTaGCCCGAAGCCGTACAAGTC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLVPFAV*PEAVQV
Trigger: GACTTGTACGGCTTCGGGGCAGACAGCAAAGGGAAC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTACAGGTTCCAAGACATaGTCTGCCACGCTGGCAGAG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCTGSKT*SATLAE
Trigger: CTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGACAGGTTCCAAGACATaGTCTGCCACGCTGGCAGAG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLTGSKT*SATLAE
Trigger: CTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGGGGCTACAAGTGTGTaGCACCGTGCCTGGCTAATT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLGATSV*HRAWLI
Trigger: AATTAGCCAGGCACGGTGGCACACACTTGTAGCCCC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACGCTGTCCTCTCCCGTaGCTGTCACGCTCCACTCCC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLRCPLP*LSRSTP
Trigger: GGGAGTGGAGCGTGACAGGCACGGGAGAGGACAGCG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCAGACAGTTCACGACTaGCCGTCACTTCCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLQTVHD*PSLPSF
Trigger: GAAGGAGGGAAGTGACGGGCAGTCGTGAACTGTCTG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCAGACAGTTCACGACTaGCCGTCACTTCCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCQTVHD*PSLPSF
Trigger: GAAGGAGGGAAGTGACGGGCAGTCGTGAACTGTCTG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTGCTCTCTGAAGTCCTaGAGTGCCTTCTGGGTCTGC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLCSLKS*SAFWVC
Trigger: GCAGACCCAGAAGGCACTGCAGGACTTCAGAGAGCA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCTGTCGCCAGGGACATaGTGGGTACACAACCAGCTT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLLSPGT*WVHNQL
Trigger: AAGCTGGTTGTGTACCCACCATGTCCCTGGCGACAG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACGCTGCCCGATGCAGTaGGTGCAGGTGCAAGGCCTG +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLRCPMQ*VQVQGL
Trigger: CAGGCCTTGCACCTGCACCCACTGCATCGGGCAGCG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCATGCTCTGCCACGCTaGCAGAGCTTAGTGACCTTG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLHALPR*QSLVTL
Trigger: CAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAGCCTCCCTAGTAGCTaGGGCTACAAGTGTGTGCCA +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCSLPSS*GYKCVP
Trigger: TGGCACACACTTGTAGCCCCAGCTACTAGGGAGGCT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAGCCTCCCTAGTAGCTaGGGCTACAAGTGTGTGCCA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSLPSS*GYKCVP
Trigger: TGGCACACACTTGTAGCCCCAGCTACTAGGGAGGCT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTCTGGAGTCTGCCCCTaGGGTCACTCAGTCACTCAA +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCSGVCP*GHSVTQ
Trigger: TTGAGTGACTGAGTGACCCCAGGGGCAGACTCCAGA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGTCGACTGCTCAGCCTaGGCCTGTCATCCCTATATA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLVDCSA*ACHPYI
Trigger: TATATAGGGATGACAGGCTCAGGCTGAGCAGTCGAC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGTCGACTGCTCAGCCTaGGCCTGTCATCCCTATATA +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCVDCSA*ACHPYI
Trigger: TATATAGGGATGACAGGCTCAGGCTGAGCAGTCGAC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCCATTGCTAAGCCAATaGGCTATCTGCTGGGCTGTG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCPLLSQ*AICWAV
Trigger: CACAGCCCAGCAGATAGCTCATTGGCTTAGCAATGG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCCTTCACCCCAGGGATaGGTTCCAGTTGGTTTAAGC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLPSPQG*VPVGLS
Trigger: GCTTAAACCAACTGGAACTCATCCCTGGGGTGAAGG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCCTTCACCCCAGGGATaGGTTCCAGTTGGTTTAAGC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCPSPQG*VPVGLS
Trigger: GCTTAAACCAACTGGAACTCATCCCTGGGGTGAAGG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCCTTCTGGGTCTGCCTaGAATCCCAACGCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLPSGSA*NPNALG
Trigger: TCCTAAAGCGTTGGGATTTCAGGCAGACCCAGAAGG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTCCCTCTTTGCTCTCTaGAGTCCTGCAGTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSLFAL*SPAVPS
Trigger: AGAAGGCACTGCAGGACTTCAGAGAGCAAAGAGGGA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTATCGCCCGTGCCCTTaGAGCCAGTTGTCAAAGACA +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCYRPCP*SQLSKT
Trigger: TGTCTTTGACAACTGGCTGCAAGGGCACGGGCGATA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTATCGCCCGTGCCCTTaGAGCCAGTTGTCAAAGACA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLYRPCP*SQLSKT
Trigger: TGTCTTTGACAACTGGCTGCAAGGGCACGGGCGATA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCGCCACTCAAGTCTCTaGCCATCTTCCTGGGAAACT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLRHSSL*PSSWET
Trigger: AGTTTCCCAGGAAGATGGGCAGAGACTTGAGTGGCG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCACTCCCCACCCAGCTaGAATGTGGCCTTGATTTTC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCHSPPS*NVALIF
Trigger: GAAAATCAAGGCCACATTGCAGCTGGGTGGGGAGTG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTCTGAAGTCCTGCAGTaGCTTCTGGGTCTGCCTGAA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSEVLQ*LLGLPE
Trigger: TTCAGGCAGACCCAGAAGGCACTGCAGGACTTCAGA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGGCTTCTTCTCCCGCTaGAGCCTCAGCCACCATCGG +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLGFFSR*SLSHHR
Trigger: CCGATGGTGGCTGAGGCTCCAGCGGGAGAAGAAGCC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGACACCAGATGGTGGGTaGTCTTGGTCCCAACATCAG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLTPDGG*SWSQHQ
Trigger: CTGATGTTGGGACCAAGACCACCCACCATCTGGTGT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTACACCAGATGGTGGGTaGTCTTGGTCCCAACATCAG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCTPDGG*SWSQHQ
Trigger: CTGATGTTGGGACCAAGACCACCCACCATCTGGTGT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCTCTGCCCATCTTCCTaGGAAACTGTCCTGTCTCTC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLLCPSS*ETVLSL
Trigger: GAGAGACAGGACAGTTTCCCAGGAAGATGGGCAGAG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGTGAGCCACGGCACCTaGCCTCAAGTTTCTGTGAAA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLVSHGT*PQVSVK
Trigger: TTTCACAGAAACTTGAGGCCAGGTGCCGTGGCTCAC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTACATCCAAGTGGGACTaGCCTCTAGCACCACCTTCT +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCTSKWD*PLAPPS
Trigger: AGAAGGTGGTGCTAGAGGCCAGTCCCACTTGGATGT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCCAGACCAGCCTGAGTaGCACAGCAAAACACCATCT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLPDQPE*HSKTPS
Trigger: AGATGGTGTTTTGCTGTGCCACTCAGGCTGGTCTGG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTCCTGCAGTGCCTTCTaGGTCTGCCTGAAATCCCAA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSCSAF*VCLKSQ
Trigger: TTGGGATTTCAGGCAGACCCAGAAGGCACTGCAGGA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTATGTTCTTTGTGGTTTaGATCCTGGCAGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCMFFVV*ILAEAR
Trigger: CCTGGCCTCTGCCAGGATTCAAACCACAAAGAACAT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGATGTTCTTTGTGGTTTaGATCCTGGCAGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLMFFVV*ILAEAR
Trigger: CCTGGCCTCTGCCAGGATTCAAACCACAAAGAACAT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGCGGTCAGCAGCGGCTaGATGGTCTGGTTGAACCTC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLAVSSG*MVWLNL
Trigger: GAGGTTCAACCAGACCATGCAGCCGCTGCTGACCGC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTCCATTCTGACGCACTaGTGGGTGGTGTTGAGTATC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCSILTH*WVVLSI
Trigger: GATACTCAACACCACCCAGCAGTGCGTCAGAATGGA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTCCATTCTGACGCACTaGTGGGTGGTGTTGAGTATC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSILTH*WVVLSI
Trigger: GATACTCAACACCACCCAGCAGTGCGTCAGAATGGA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTATGGGTGTGAGCTCTaGCCTTCGAGGCTGTATGTT +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCYGCEL*PSRLYV
Trigger: AACATACAGCCTCGAAGGGCAGAGCTCACACCCATA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGATGGTGGGTGGTCTTaGTCCCAACATCAGCTTCAA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLDGGWS*SQHQLQ
Trigger: TTGAAGCTGATGTTGGGACCAAGACCACCCACCATC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAAAGCAGGGCCGCTGGTaGGGGTCCCTTTTCCCAAGT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLKQGRW*GSLFPS
Trigger: ACTTGGGAAAAGGGACCCCCACCAGCGGCCCTGCTT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGGGATGAGTTCCAGTTaGTTTAAGCCAGACTGGTGC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCGMSSS*FKPDWC
Trigger: GCACCAGTCTGGCTTAAACCAACTGGAACTCATCCC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGGGATGAGTTCCAGTTaGTTTAAGCCAGACTGGTGC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLGMSSS*FKPDWC
Trigger: GCACCAGTCTGGCTTAAACCAACTGGAACTCATCCC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACCAGTCATCTTTAGCTaGGCAGTGGCCCCTCGAGGC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLPVIFS*AVAPRG
Trigger: GCCTCGAGGGGCCACTGCCCAGCTAAAGATGACTGG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGTTCCTGATGGTGCATaGCTGGTGTCCAGTCATCTT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLVPDGA*LVSSHL
Trigger: AAGATGACTGGACACCAGCCATGCACCATCAGGAAC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTATCCTGTTTCACTCTaGTCTTTGCAGGAACCGGGA +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCYPVSL*SLQEPG
Trigger: TCCCGGTTCCTGCAAAGATCAGAGTGAAACAGGATA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTATCCTGTTTCACTCTaGTCTTTGCAGGAACCGGGA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLYPVSL*SLQEPG
Trigger: TCCCGGTTCCTGCAAAGATCAGAGTGAAACAGGATA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAACAGGTGCTGGTTCCTaGTGGTGCATGGCTGGTGTC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLTGAGS*WCMAGV
Trigger: GACACCAGCCATGCACCATCAGGAACCAGCACCTGT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCTTGACTTCCCTCTTTaGTCTCTGAAGTCCTGCAGT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLLDFPL*SLKSCS
Trigger: ACTGCAGGACTTCAGAGAGCAAAGAGGGAAGTCAAG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGAGAATACAGGGGTGTaGGTGTCCCGGACACTTGCC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLENTGV*VSRTLA
Trigger: GGCAAGTGTCCGGGACACCCACACCCCTGTATTCTC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTGGGAAAGCTGGATTTaGAGGCTGGAAGAGATCTCA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLWESWI*RLEEIS
Trigger: TGAGATCTCTTCCAGCCTCCAAATCCAGCTTTCCCA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTGGGAAAGCTGGATTTaGAGGCTGGAAGAGATCTCA +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCWESWI*RLEEIS
Trigger: TGAGATCTCTTCCAGCCTCCAAATCCAGCTTTCCCA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCTCAATCAAAAGGGATaGCAGGAATTCCAAGGGAGG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLLNQKG*QEFQGR
Trigger: CCTCCCTTGGAATTCCTGCCATCCCTTTTGATTGAG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGCTGTTGGGGAAAGATaGACATTCTCAACTCCACCA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLAVGER*TFSTPP
Trigger: TGGTGGAGTTGAGAATGTCCATCTTTCCCCAACAGC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTATCCGGGATTTGGGCATaGAGGGGTTCGGAGGAGAAT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLSGIWA*RGSEEN
Trigger: ATTCTCCTCCGAACCCCTTCATGCCCAAATCCCGGA...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGAGGGAAACTGTCTCTaGCGTCCTCCTCCAACTGTG +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLEGNCL*RPPPTV
Trigger: CACAGTTGGAGGAGGACGGCAGAGACAGTTTCCCTC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACTGTCGCCAGGGACATaGTGGGTACACAACCAGCTT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLLSPGT*WVHNQL
Trigger: AAGCTGGTTGTGTACCCACCATGTCCCTGGCGACAG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGTCCTCCTCCAACTGTaGTTTCTGACGATCCTTAAT +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCVLLQL*FLTILN
Trigger: ATTAAGGATCGTCAGAAACCACAGTTGGAGGAGGAC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGTCCTCCTCCAACTGTaGTTTCTGACGATCCTTAAT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLVLLQL*FLTILN
Trigger: ATTAAGGATCGTCAGAAACCACAGTTGGAGGAGGAC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTGTCATTCAAGTTATTaGGCTTCTTCTCCCGCTGGA +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCCHSSY*ASSPAG
Trigger: TCCAGCGGGAGAAGAAGCCCAATAACTTGAATGACA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTGTCATTCAAGTTATTaGGCTTCTTCTCCCGCTGGA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLCHSSY*ASSPAG
Trigger: TCCAGCGGGAGAAGAAGCCCAATAACTTGAATGACA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACATGCTCTGCCACGCTaGCAGAGCTTAGTGACCTTG +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLHALPR*QSLVTL
Trigger: CAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAAATACAAAGGCACATaGAAGTGGTCAGATCCGCTC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLKYKGT*KWSDPL
Trigger: GAGCGGATCTGACCACTTCCATGTGCCTTTGTATTT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAAATACAAAGGCACATaGAAGTGGTCAGATCCGCTC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCKYKGT*KWSDPL
Trigger: GAGCGGATCTGACCACTTCCATGTGCCTTTGTATTT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTATCTGGAGTCTGCCCCTaGGGTCACTCAGTCACTCAA +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLSGVCP*GHSVTQ
Trigger: TTGAGTGACTGAGTGACCCCAGGGGCAGACTCCAGA...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGTAAAATGGGAAAGCTaGATTTGGAGGCTGGAAGAG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCVKWES*IWRLEE
Trigger: CTCTTCCAGCCTCCAAATCCAGCTTTCCCATTTTAC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTCTGGCTGCAACAACTaGATTCTGTTAAGTGCCCAT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSGCNN*ILLSAH
Trigger: ATGGGCACTTAACAGAATCCAGTTGTTGCAGCCAGA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCATGCATGTGCCTTTTaGCTAACACACACTCTTGTC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCHACAF*LTHTLV
Trigger: GACAAGAGTGTGTGTTAGCCAAAAGGCACATGCATG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCATGCATGTGCCTTTTaGCTAACACACACTCTTGTC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLHACAF*LTHTLV
Trigger: GACAAGAGTGTGTGTTAGCCAAAAGGCACATGCATG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACTGAGGACAAAGTCGTaGCTGTCTATCTCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLLRTKS*LSISGP
Trigger: TGGGCCTGAGATAGACAGTCACGACTTTGTCCTCAG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAACTGCTGGGTGGTGTTaGGTATCCTCAGAGCTTCGT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLTAGWC*VSSELR
Trigger: ACGAAGCTCTGAGGATACTCAACACCACCCAGCAGT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAATGTACGTTCCATTCTaGCGCACTGCTGGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLMYVPF*RTAGWC
Trigger: ACACCACCCAGCAGTGCGTCAGAATGGAACGTACAT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACCATTGCTAAGCCAATaGGCTATCTGCTGGGCTGTG +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLPLLSQ*AICWAV
Trigger: CACAGCCCAGCAGATAGCTCATTGGCTTAGCAATGG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACCTTCACCCCAGGGATaGGTTCCAGTTGGTTTAAGC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLPSPQG*VPVGLS
Trigger: GCTTAAACCAACTGGAACTCATCCCTGGGGTGAAGG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAAATGCTTTGGTGAATaGTGCTTGGAAAAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLKCFGE*CLEKLE
Trigger: CTCCAGCTTTTCCAAGCATCATTCACCAAAGCATTT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCATCAGTGGAGTCTCTaGTTTGTTCAGATTAGTCAC +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCHQWSL*FVQISH
Trigger: GTGACTAATCTGAACAAAGCAGAGACTCCACTGATG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000399640.3
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAGGTTGTCTGTCATCTaGTTTTCTCATCAGTGGAGT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLRLSVI*FSHQWS
Trigger: ACTCCACTGATGAGAAAAGCAGATGACAGACAACCT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000399640.3
CDS-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGCCGAGAGCTTGCGCTaGCCGATGCAGTGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGAESLR*PMQWVQ
Trigger: CTGCACCCACTGCATCGGGCAGCGCAAGCTCTCGGC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACGCCACTCAAGTCTCTaGCCATCTTCCTGGGAAACT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLRHSSL*PSSWET
Trigger: AGTTTCCCAGGAAGATGGGCAGAGACTTGAGTGGCG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACACTCCCCACCCAGCTaGAATGTGGCCTTGATTTTC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLHSPPS*NVALIF
Trigger: GAAAATCAAGGCCACATTGCAGCTGGGTGGGGAGTG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGGCAGTTACCATTCCTaGGATGTCCTTGACCCAGAC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLGSYHS*DVLDPD
Trigger: GTCTGGGTCAAGGACATCCCAGGAATGGTAACTGCC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAACATCCAAGTGGGACTaGCCTCTAGCACCACCTTCT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLTSKWD*PLAPPS
Trigger: AGAAGGTGGTGCTAGAGGCCAGTCCCACTTGGATGT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTCTTCATCATGCTGTTaGGGAAAGATGGACATTCTC +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSSSCC*GKMDIL
Trigger: GAGAATGTCCATCTTTCCCCAACAGCATGATGAAGA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAACCAAATGCTTTGGTaGATGATGCTTGGAAAAGCT +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCNQMLW*MMLGKA
Trigger: AGCTTTTCCAAGCATCATTCACCAAAGCATTTGGTT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTATGCACAAGGTATTTTTaGTCCTTGCCAGCGGAGGGA +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLCTRYF*SLPAEG
Trigger: TCCCTCCGCTGGCAAGGATCAAAAATACCTTGTGCA...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAACTCCTGCTGGGGGATaGCCCCCAACTGTGTCCCAG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGTPAGG*PPTVSQ
Trigger: CTGGGACACAGTTGGGGGTCATCCCCCAGCAGGAGT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR GCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGGTATTTTTGATCCTTaGCAGCGGAGGGAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLGIFDP*QRRERE
Trigger: CTCTCTCTCCCTCCGCTGGCAAGGATCAAAAATACC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGGGATGAGTTCCAGTTaGTTTAAGCCAGACTGGTGC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLGMSSS*FKPDWC
Trigger: GCACCAGTCTGGCTTAAACCAACTGGAACTCATCCC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGATCTTTAGCTGGGCAGTaGCCCCTCGAGGCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGSLAGQ*PLEARA
Trigger: AGCCCGAGCCTCGAGGGGCCACTGCCCAGCTAAAGA...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACTGATGGTGCATGGCTaGTGTCCAGTCATCTTTAGC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLLMVHG*CPVIFS
Trigger: GCTAAAGATGACTGGACACCAGCCATGCACCATCAG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGTTCCTGATGGTGCATaGCTGGTGTCCAGTCATCTT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLVPDGA*LVSSHL
Trigger: AAGATGACTGGACACCAGCCATGCACCATCAGGAAC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCCATTCGTGGCATGTTaGCTTTGCTTGCATATATTT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLPFVAC*LCLHIF
Trigger: AAATATATGCAAGCAAAGCCAACATGCCACGAATGG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGACCATCTTCGCAGTCCTaGTGGTGGCCTCCCACGATG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGPSSQS*WWPPTM
Trigger: CATCGTGGGAGGCCACCATCAGGACTGCGAAGATGG...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTATGGGGAGTAAGAAGATaGGGTATGTGGCAGTTACCA +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLWGVRR*GMWQLP
Trigger: TGGTAACTGCCACATACCTCATCTTCTTACTCCCCA...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTACACATTCCCCATTCTaGACCTTTGAGAATCTAATA +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCTHSPF*TFENLI
Trigger: TATTAGATTCTCAAAGGTTCAGAATGGGGAATGTGT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGCTAGAGCTCGGCGCTaGGAGAGCACAGGAGAGTCA +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGARARR*ESTGES
Trigger: TGACTCTCCTGTGCTCTCTCAGCGCCGAGCTCTAGC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAGTGATGAGGCTGGGTaGTGGGATCGCTTGACGGGC +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGSDEAG*WDRLTG
Trigger: GCCCGTCAAGCGATCCCATCACCCAGCCTCATCACT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGCGGTCAGCAGCGGCTaGATGGTCTGGTTGAACCTC +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGAVSSG*MVWLNL
Trigger: GAGGTTCAACCAGACCATGCAGCCGCTGCTGACCGC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCTTTCTCCAGAAAAATaGTCATATGCAGAGATTCAG +
Preference number: 4 (lower is better)
Translates to: QTWHATSGDSCEWPEATCLSPEK*SYAEIQ
Trigger: CTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGCATTTAATTCTGGCTaGAACAACTGGATTCTGTTA +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLAFNSG*NNWILL
Trigger: TAACAGAATCCAGTTGTTGCAGCCAGAATTAAATGC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGTGGCATGTTGGCTTTaGTTGCATATATTTACCTTT +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLVACWL*LHIFTF
Trigger: AAAGGTAAATATATGCAAGCAAAGCCAACATGCCAC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGAGGATGCCGGTAGATaGGTATCGCCCGTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGEDAGR*VSPVPL
Trigger: CAAGGGCACGGGCGATACCCATCTACCGGCATCCTC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAAGCAGGGCCGCTGGTaGGGGTCCCTTTTCCCAAGT +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGKQGRW*GSLFPS
Trigger: ACTTGGGAAAAGGGACCCCCACCAGCGGCCCTGCTT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTATGGGAAAGCTGGATTTaGAGGCTGGAAGAGATCTCA +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLWESWI*RLEEIS
Trigger: TGAGATCTCTTCCAGCCTCCAAATCCAGCTTTCCCA...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAACAGGTGCTGGTTCCTaGTGGTGCATGGCTGGTGTC +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGTGAGS*WCMAGV
Trigger: GACACCAGCCATGCACCATCAGGAACCAGCACCTGT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACCAACAGAGCCAGGGTaGAAACAATGTCAGTTGAAT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLPTEPG*KQCQLN
Trigger: ATTCAACTGACATTGTTTGCACCCTGGCTCTGTTGG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCATGTTGGCTTTGCTTaGATATATTTACCTTTTCAG +
Preference number: 4 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLHVGFA*IYLPFQ
Trigger: CTGAAAAGGTAAATATATGCAAGCAAAGCCAACATG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAGTGTCGAAACTGTCTaGCATAGTGGGCTCCGCCGG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGSVETV*HSGLRR
Trigger: CCGGCGGAGCCCACTATGCCAGACAGTTTCGACACT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000399640.3
ENST00000521180.5
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGAGAATACAGGGGTGTaGGTGTCCCGGACACTTGCC +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGENTGV*VSRTLA
Trigger: GGCAAGTGTCCGGGACACCCACACCCCTGTATTCTC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGTCCTCCTCCAACTGTaGTTTCTGACGATCCTTAAT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLVLLQL*FLTILN
Trigger: ATTAAGGATCGTCAGAAACCACAGTTGGAGGAGGAC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGACTCCAAGCTCCGGGATaGAACGGCTCCAGCAAGATG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGLQAPG*NGSSKM
Trigger: CATCTTGCTGGAGCCGTTCCATCCCGGAGCTTGGAG...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAAAATACAAAGGCACATaGAAGTGGTCAGATCCGCTC +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLKYKGT*KWSDPL
Trigger: GAGCGGATCTGACCACTTCCATGTGCCTTTGTATTT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGTAAAATGGGAAAGCTaGATTTGGAGGCTGGAAGAG +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLVKWES*IWRLEE
Trigger: CTCTTCCAGCCTCCAAATCCAGCTTTCCCATTTTAC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTATCTGGCTGCAACAACTaGATTCTGTTAAGTGCCCAT +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLSGCNN*ILLSAH
Trigger: ATGGGCACTTAACAGAATCCAGTTGTTGCAGCCAGA...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGAAAAATCCCAGAGGTaGAGGCTCAATCAAAAGGGA +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLEKSQR*RLNQKG
Trigger: TCCCTTTTGATTGAGCCTCCACCTCTGGGATTTTTC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGGAAATGCAGAGGTGTaGCAGTGCGTCCATCCTCAG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGGNAEV*QCVHPQ
Trigger: CTGAGGATGGACGCACTGTCACACCTCTGCATTTCC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGAGGGAAACTGTCTCTaGCGTCCTCCTCCAACTGTG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGEGNCL*RPPPTV
Trigger: CACAGTTGGAGGAGGACGGCAGAGACAGTTTCCCTC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGTTCCCTTTGCTGTCTaGCCCGAAGCCGTACAAGTC +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGVPFAV*PEAVQV
Trigger: GACTTGTACGGCTTCGGGGCAGACAGCAAAGGGAAC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGGGGCTACAAGTGTGTaGCACCGTGCCTGGCTAATT +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGGATSV*HRAWLI
Trigger: AATTAGCCAGGCACGGTGGCACACACTTGTAGCCCC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAGCCTCCCTAGTAGCTaGGGCTACAAGTGTGTGCCA +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGSLPSS*GYKCVP
Trigger: TGGCACACACTTGTAGCCCCAGCTACTAGGGAGGCT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAATGTACGTTCCATTCTaGCGCACTGCTGGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGMYVPF*RTAGWC
Trigger: ACACCACCCAGCAGTGCGTCAGAATGGAACGTACAT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGTCGACTGCTCAGCCTaGGCCTGTCATCCCTATATA +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGVDCSA*ACHPYI
Trigger: TATATAGGGATGACAGGCTCAGGCTGAGCAGTCGAC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGATATCGCCCGTGCCCTTaGAGCCAGTTGTCAAAGACA +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGYRPCP*SQLSKT
Trigger: TGTCTTTGACAACTGGCTGCAAGGGCACGGGCGATA...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGACACTCCCCACCCAGCTaGAATGTGGCCTTGATTTTC +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGHSPPS*NVALIF
Trigger: GAAAATCAAGGCCACATTGCAGCTGGGTGGGGAGTG...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAAAGGCACATGGAAGTaGTCAGATCCGCTCTCGCCA +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGKGTWK*SDPLSP
Trigger: TGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTATTCTCATCAGTAAAATaGGAAAGCTGGATTTGGAGG +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLFSSVK*ESWIWR
Trigger: CCTCCAAATCCAGCTTTCCCATTTTACTGATGAGAA...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAACATCCAAGTGGGACTaGCCTCTAGCACCACCTTCT +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGTSKWD*PLAPPS
Trigger: AGAAGGTGGTGCTAGAGGCCAGTCCCACTTGGATGT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGACCAACGCCATTCGTaGCATGTTGGCTTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGDQRHS*HVGFAC
Trigger: GCAAGCAAAGCCAACATGCCACGAATGGCGTTGGTC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR TCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAACACATTCCCCATTCTaGACCTTTGAGAATCTAATA +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLTHSPF*TFENLI
Trigger: TATTAGATTCTCAAAGGTTCAGAATGGGGAATGTGT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAATGTTCTTTGTGGTTTaGATCCTGGCAGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGMFFVV*ILAEAR
Trigger: CCTGGCCTCTGCCAGGATTCAAACCACAAAGAACAT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGATGCACAAGGTATTTTTaGTCCTTGCCAGCGGAGGGA +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGCTRYF*SLPAEG
Trigger: TCCCTCCGCTGGCAAGGATCAAAAATACCTTGTGCA...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTACTTTCTCCAGAAAAATaGTCATATGCAGAGATTCAG +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLLSPEK*SYAEIQ
Trigger: CTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAG...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGATATGGGTGTGAGCTCTaGCCTTCGAGGCTGTATGTT +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGYGCEL*PSRLYV
Trigger: AACATACAGCCTCGAAGGGCAGAGCTCACACCCATA...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGCATTTAATTCTGGCTaGAACAACTGGATTCTGTTA +
Preference number: 4 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLAFNSG*NNWILL
Trigger: TAACAGAATCCAGTTGTTGCAGCCAGAATTAAATGC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR GCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGGTATTTTTGATCCTTaGCAGCGGAGGGAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGGIFDP*QRRERE
Trigger: CTCTCTCTCCCTCCGCTGGCAAGGATCAAAAATACC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGATGGTGGGTGGTCTTaGTCCCAACATCAGCTTCAA +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGDGGWS*SQHQLQ
Trigger: TTGAAGCTGATGTTGGGACCAAGACCACCCACCATC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGACTGATGGTGCATGGCTaGTGTCCAGTCATCTTTAGC +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGLMVHG*CPVIFS
Trigger: GCTAAAGATGACTGGACACCAGCCATGCACCATCAG...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGATATCCTGTTTCACTCTaGTCTTTGCAGGAACCGGGA +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGYPVSL*SLQEPG
Trigger: TCCCGGTTCCTGCAAAGATCAGAGTGAAACAGGATA...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGATGGGGAGTAAGAAGATaGGGTATGTGGCAGTTACCA +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGWGVRR*GMWQLP
Trigger: TGGTAACTGCCACATACCTCATCTTCTTACTCCCCA...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGTCCTCCTCCAACTGTaGTTTCTGACGATCCTTAAT +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGVLLQL*FLTILN
Trigger: ATTAAGGATCGTCAGAAACCACAGTTGGAGGAGGAC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGTAAAATGGGAAAGCTaGATTTGGAGGCTGGAAGAG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGVKWES*IWRLEE
Trigger: CTCTTCCAGCCTCCAAATCCAGCTTTCCCATTTTAC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGATCTGGCTGCAACAACTaGATTCTGTTAAGTGCCCAT +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGSGCNN*ILLSAH
Trigger: ATGGGCACTTAACAGAATCCAGTTGTTGCAGCCAGA...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAAATGCTTTGGTGAATaGTGCTTGGAAAAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGKCFGE*CLEKLE
Trigger: CTCCAGCTTTTCCAAGCATCATTCACCAAAGCATTT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAACCAAATGCTTTGGTaGATGATGCTTGGAAAAGCT +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGNQMLW*MMLGKA
Trigger: AGCTTTTCCAAGCATCATTCACCAAAGCATTTGGTT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR TCA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAACACATTCCCCATTCTaGACCTTTGAGAATCTAATA +
Preference number: 4 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGTHSPF*TFENLI
Trigger: TATTAGATTCTCAAAGGTTCAGAATGGGGAATGTGT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS CCA 90 bp CCCGTCTCTTCCTCTCACCACACACACCCAGCCGCAGAGCGGGGGTaGGCGCTCGCTGTCTCCCTGGAGAACCAGCTCGTCGCAAACTTG +
Preference number: 5 (lower is better)
Translates to: PVSSSHHTHPAAERG*ALAVSLENQLVANL
Trigger: CAAGTTTGCGACGAGCTGGTTCTCCAGGGAGACAGCGAGCGCCCACCCCCGCTCTGCGGCTGGGTGTGTGTGGTGAGAGGAAGAGACGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000519435.5
CDS TCA 90 bp GAGGACACAAGGGCCGCTAAGCTCGACTTCACTCCTGCTGGGGGATaGCCCCCAACTGTGTCCCAGACACGGCTGTGTGGTAGACCAACG +
Preference number: 5 (lower is better)
Translates to: EDTRAAKLDFTPAGG*PPTVSQTRLCGRPT
Trigger: CGTTGGTCTACCACACAGCCGTGTCTGGGACACAGTTGGGGGTCATCCCCCAGCAGGAGTGAAGTCGAGCTTAGCGGCCCTTGTGTCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENST00000518298.5
ENST00000519435.5
ENST00000520020.5
ENST00000521180.5
ENST00000523634.1
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAACCAGGCCGAGAGCTaGCGCTGCCCGATGCAGTGG +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLNQAES*RCPMQW
Trigger: CCACTGCATCGGGCAGCGCAAGCTCTCGGCCTGGTT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS GCA 90 bp TGGAGCCTGGGGTCCCTGGGTAAGTTCAGTCCCAGGACTGAACCTTaGCTTCCTGAGCCTGAGCCAAGATGCTTCCTACAGCTCCAAGGG +
Preference number: 5 (lower is better)
Translates to: WSLGSLGKFSPRTEP*LPEPEPRCFLQLQG
Trigger: CCCTTGGAGCTGTAGGAAGCATCTTGGCTCAGGCTCAGGAAGGCAAGGTTCAGTCCTGGGACTGAACTTACCCAGGGACCCCAGGCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522204.1
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCAGGGGGTTGGGATGTaGCTGACACCTCATGGGCCA +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCQGVGM*LTPHGP
Trigger: TGGCCCATGAGGTGTCAGCAACATCCCAACCCCCTG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGTATCGCCCGTGCCCTaGCAGCCAGTTGTCAAAGAC +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCVSPVP*QPVVKD
Trigger: GTCTTTGACAACTGGCTGCAAGGGCACGGGCGATAC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGTATCGCCCGTGCCCTaGCAGCCAGTTGTCAAAGAC +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLVSPVP*QPVVKD
Trigger: GTCTTTGACAACTGGCTGCAAGGGCACGGGCGATAC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGCTGAGGCTGGGGAATaGCTTGAGCCCAGTAGTTCC +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLAEAGE*LEPSSS
Trigger: GGAACTACTGGGCTCAAGCAATTCCCCAGCCTCAGC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS-3UTR CAA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAAACCAGGCCGAGAGCTaGCGCTGCCCGATGCAGTGG +
Preference number: 5 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLNQAES*RCPMQW
Trigger: CCACTGCATCGGGCAGCGCAAGCTCTCGGCCTGGTT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAGATGGTGGGTGGTCTaGGTCCCAACATCAGCTTCA +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCRWWVV*VPTSAS
Trigger: TGAAGCTGATGTTGGGACCAAGACCACCCACCATCT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAGATGGTGGGTGGTCTaGGTCCCAACATCAGCTTCA +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLRWWVV*VPTSAS
Trigger: TGAAGCTGATGTTGGGACCAAGACCACCCACCATCT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAAGAGATCTCACAGCTaGACCACCCTAGTAGGAGGG +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCKRSHS*TTLVGG
Trigger: CCCTCCTACTAGGGTGGTCAAGCTGTGAGATCTCTT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCTGCACAAGGTATTTTaGATCCTTGCCAGCGGAGGG +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLLHKVF*ILASGG
Trigger: CCCTCCGCTGGCAAGGATCAAAAATACCTTGTGCAG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTCTGCACAAGGTATTTTaGATCCTTGCCAGCGGAGGG +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCLHKVF*ILASGG
Trigger: CCCTCCGCTGGCAAGGATCAAAAATACCTTGTGCAG...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGGGTACACAACCAGCTaGATGAAGGCACAGAAGGTT +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCGYTTS*MKAQKV
Trigger: AACCTTCTGTGCCTTCATCAAGCTGGTTGTGTACCC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGGGTACACAACCAGCTaGATGAAGGCACAGAAGGTT +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLGYTTS*MKAQKV
Trigger: AACCTTCTGTGCCTTCATCAAGCTGGTTGTGTACCC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTTTAGTGTGTGGAGGTaGAACCTTTCCCAGCGTCTC +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCFSVWR*NLSQRL
Trigger: GAGACGCTGGGAAAGGTTCAACCTCCACACACTAAA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTTTAGTGTGTGGAGGTaGAACCTTTCCCAGCGTCTC +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLFSVWR*NLSQRL
Trigger: GAGACGCTGGGAAAGGTTCAACCTCCACACACTAAA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGCATGCATGTGCCTTTaGGCTAACACACACTCTTGT +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCACMCL*ANTHSC
Trigger: ACAAGAGTGTGTGTTAGCCAAAAGGCACATGCATGC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAATGTTCTTTGTGGTTaGAATCCTGGCAGAGGCCAG +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCNVLCG*NPGRGQ
Trigger: CTGGCCTCTGCCAGGATTCAAACCACAAAGAACATT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGAGGAAAGCAGGATCTaGCTGAAGTCATTCGAATGC +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCEESRI*LKSFEC
Trigger: GCATTCGAATGACTTCAGCAAGATCCTGCTTTCCTC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGGCCATTCGTGGCATGTaGGCTTTGCTTGCATATATT +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLAIRGM*ALLAYI
Trigger: AATATATGCAAGCAAAGCCAACATGCCACGAATGGC...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGACTCTGAACAGCTCCTaGATGGTGTCATTCAAGTTA +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLTLNSS*MVSFKL
Trigger: TAACTTGAATGACACCATCAAGGAGCTGTTCAGAGT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
ENST00000648219.1
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTACTCTGAACAGCTCCTaGATGGTGTCATTCAAGTTA +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCTLNSS*MVSFKL
Trigger: TAACTTGAATGACACCATCAAGGAGCTGTTCAGAGT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAAGATGGTGGGTGGTCTaGGTCCCAACATCAGCTTCA +
Preference number: 5 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLRWWVV*VPTSAS
Trigger: TGAAGCTGATGTTGGGACCAAGACCACCCACCATCT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAGTTCCAAATGTTCTTaGTGGTTTGAATCCTGGCAG +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCSSKCS*WFESWQ
Trigger: CTGCCAGGATTCAAACCACAAAGAACATTTGGAACT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTTTGGTTTCCTTTCACTaGTTTTCGGGCTGCTTCAAA +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCLVSFH*FSGCFK
Trigger: TTTGAAGCAGCCCGAAAACAAGTGAAAGGAAACCAA...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGCGTGGCATGTTGGCTTaGCTTGCATATATTTACCTT +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLRGMLA*LAYIYL
Trigger: AAGGTAAATATATGCAAGCAAAGCCAACATGCCACG...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGTTCTTCATCATGCTGTaGGGGAAAGATGGACATTCT +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLFFIML*GKDGHS
Trigger: AGAATGTCCATCTTTCCCCAACAGCATGATGAAGAA...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS GCA 90 bp GGTCTCTCAAGGTGGAGGGAACCTTTCCCTTCTCCGTTCCCATTTTaGTTAGCACCTGTGTATTTATATACGCAGCCTGACAGGGTATGT +
Preference number: 5 (lower is better)
Translates to: GLSRWREPFPSPFPF*LAPVYLYTQPDRVC
Trigger: ACATACCCTGTCAGGCTGCGTATATAAATACACAGGTGCTAAGCAAAATGGGAACGGAGAAGGGAAAGGTTCCCTCCACCTTGAGAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522285.1
CDS-3UTR CAA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGGGTACACAACCAGCTaGATGAAGGCACAGAAGGTT +
Preference number: 5 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLGYTTS*MKAQKV
Trigger: AACCTTCTGTGCCTTCATCAAGCTGGTTGTGTACCC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAGCTGCAATGTGGCCTaGATTTTCTCATCAGTAAAA +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCSCNVA*IFSSVK
Trigger: TTTTACTGATGAGAAAATCAAGGCCACATTGCAGCT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp AGACAGGTTCCAAGACATGCTCTGCCACGCTGGCAGAGCTTAGTGACCTTGCTGAGCTGCAATGTGGCCTaGATTTTCTCATCAGTAAAA +
Preference number: 5 (lower is better)
Translates to: RQVPRHALPRWQSLVTLLSCNVA*IFSSVK
Trigger: TTTTACTGATGAGAAAATCAAGGCCACATTGCAGCT...CAGCAAGGTCACTAAGCTCTGCCAGCGTGGCAGAGCATGTCTTGGAACCTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTGGAGAGAGAGTTATCTaGGTTTCCTTTCACTTGTTT +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCGERVI*VSFHLF
Trigger: AAACAAGTGAAAGGAAACCAAGATAACTCTCTCTCC...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp CAAACTTGGCACGCAACTTCCGGGGACTCTTGTGAATGGCCTGAAGCCACCTGTAAACAGGTTTTCGGTTaGTTTAACACATTCCCCATT +
Preference number: 5 (lower is better)
Translates to: QTWHATSGDSCEWPEATCKQVFG*FNTFPI
Trigger: AATGGGGAATGTGTTAAACAAACCGAAAACCTGTTT...ACAGGTGGCTTCAGGCCATTCACAAGAGTCCCCGGAAGTTGCGTGCCAAGTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGACAGGGGGTTGGGATGTaGCTGACACCTCATGGGCCA +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGQGVGM*LTPHGP
Trigger: TGGCCCATGAGGTGTCAGCAACATCCCAACCCCCTG...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAAATGTTCTTTGTGGTTaGAATCCTGGCAGAGGCCAG +
Preference number: 5 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLNVLCG*NPGRGQ
Trigger: CTGGCCTCTGCCAGGATTCAAACCACAAAGAACATT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGAGGAAAGCAGGATCTaGCTGAAGTCATTCGAATGC +
Preference number: 5 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLEESRI*LKSFEC
Trigger: GCATTCGAATGACTTCAGCAAGATCCTGCTTTCCTC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGTATCGCCCGTGCCCTaGCAGCCAGTTGTCAAAGAC +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGVSPVP*QPVVKD
Trigger: GTCTTTGACAACTGGCTGCAAGGGCACGGGCGATAC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS CCA 90 bp CAACTGTGTCCCAGACACGGCTGTGTGGTAGACCAACGCCATTCGTaGCATGTTGGCTTTGCTTGCATATATTTACCTTTTCAGAAAATA +
Preference number: 5 (lower is better)
Translates to: QLCPRHGCVVDQRHS*HVGFACIYLPFQKI
Trigger: TATTTTCTGAAAAGGTAAATATATGCAAGCAAAGCCAACATGCCACGAATGGCGTTGGTCTACCACACAGCCGTGTCTGGGACACAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000518298.5
ENST00000519435.5
ENST00000520020.5
ENST00000521180.5
ENST00000523634.1
CDS CCA 90 bp TTTCTTCATCTGAAAAACAGAAGAAAATACTCGGGAGACTTAGCATaGGGAGAGGGCGTGAGGATTGGTGAGACAGTTTCTTTCCCTACT +
Preference number: 5 (lower is better)
Translates to: FLHLKNRRKYSGDLA*GEGVRIGETVSFPT
Trigger: AGTAGGGAAAGAAACTGTCTCACCAATCCTCACGCCCTCTCCCCATGCTAAGTCTCCCGAGTATTTTCTTCTGTTTTTCAGATGAAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000523854.5
ENST00000523855.1
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAAGAGATCTCACAGCTaGACCACCCTAGTAGGAGGG +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGKRSHS*TTLVGG
Trigger: CCCTCCTACTAGGGTGGTCAAGCTGTGAGATCTCTT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGGAGAGAGAGTTATCTaGGTTTCCTTTCACTTGTTT +
Preference number: 5 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLGERVI*VSFHLF
Trigger: AAACAAGTGAAAGGAAACCAAGATAACTCTCTCTCC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGACTGCACAAGGTATTTTaGATCCTTGCCAGCGGAGGG +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGLHKVF*ILASGG
Trigger: CCCTCCGCTGGCAAGGATCAAAAATACCTTGTGCAG...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS GCA 90 bp GTGGTTAAGCTCTCCAATCAGTTAACTTTAAGTAAAGGAGATGAATaGAGGTGGGCCTCATCCAATAGGTTGAAGGCCTTAAGGGCAAAA +
Preference number: 5 (lower is better)
Translates to: VVKLSNQLTLSKGDE*RWASSNRLKALRAK
Trigger: TTTTGCCCTTAAGGCCTTCAACCTATTGGATGAGGCCCACCTGCATTCATCTCCTTTACTTAAAGTTAACTGATTGGAGAGCTTAACCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000521627.1
CDS-3UTR CAA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAAAACAGGTTTTCGGTTaGTTTAACACATTCCCCATT +
Preference number: 5 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLKQVFG*FNTFPI
Trigger: AATGGGGAATGTGTTAAACAAACCGAAAACCTGTTT...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAATGGGAAAGCTGGATTaGGAGGCTGGAAGAGATCTC +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGMGKLD*EAGRDL
Trigger: GAGATCTCTTCCAGCCTCCAAATCCAGCTTTCCCAT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp TTTCCCAAATACAAAGGCACATGGAAGTGGTCAGATCCGCTCTCGCCACGATTAGCATGTTGGCTTTGCTaGCATATATTTACCTTTTCA +
Preference number: 5 (lower is better)
Translates to: FPKYKGTWKWSDPLSPRLACWLC*HIFTFS
Trigger: TGAAAAGGTAAATATATGCAAGCAAAGCCAACATGC...TAATCGTGGCGAGAGCGGATCTGACCACTTCCATGTGCCTTTGTATTTGGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521180.5
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGCATGCATGTGCCTTTaGGCTAACACACACTCTTGT +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGACMCL*ANTHSC
Trigger: ACAAGAGTGTGTGTTAGCCAAAAGGCACATGCATGC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAATGTTCTTTGTGGTTaGAATCCTGGCAGAGGCCAG +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGNVLCG*NPGRGQ
Trigger: CTGGCCTCTGCCAGGATTCAAACCACAAAGAACATT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGAGGAAAGCAGGATCTaGCTGAAGTCATTCGAATGC +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGEESRI*LKSFEC
Trigger: GCATTCGAATGACTTCAGCAAGATCCTGCTTTCCTC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAACTCTGAACAGCTCCTaGATGGTGTCATTCAAGTTA +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGTLNSS*MVSFKL
Trigger: TAACTTGAATGACACCATCAAGGAGCTGTTCAGAGT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAAGTTCCAAATGTTCTTaGTGGTTTGAATCCTGGCAG +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGSSKCS*WFESWQ
Trigger: CTGCCAGGATTCAAACCACAAAGAACATTTGGAACT...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGATTGGTTTCCTTTCACTaGTTTTCGGGCTGCTTCAAA +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGLVSFH*FSGCFK
Trigger: TTTGAAGCAGCCCGAAAACAAGTGAAAGGAAACCAA...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS-3UTR CAA 90 bp ATAAAAGCTATGGTCCTTTCTCCAGAAAAATGCTCATATGCAGAGATTCAGGGAGGAGAGAGAGTTATCTaGGTTTCCTTTCACTTGTTT +
Preference number: 5 (lower is better)
Translates to: IKAMVLSPEKCSYAEIQGGERVI*VSFHLF
Trigger: AAACAAGTGAAAGGAAACCAAGATAACTCTCTCTCC...TCCCTGAATCTCTGCATATGAGCATTTTTCTGGAGAAAGGACCATAGCTTTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000399640.3
ENST00000521180.5
ENST00000522652.6
CDS CCA 72 bp TCCTCTCACCACACACACCCAGCCGCAGAGCGGGGGTaGGCGCTCGCTGTCTCCCTGGAGAACCAGCTCGTC +
Preference number: 6 (lower is better)
Translates to: SSHHTHPAAERG*ALAVSLENQLV
Trigger: GACGAGCTGGTTCTCCAGGGAGACAGCGAGCGCCCACCCCCGCTCTGCGGCTGGGTGTGTGTGGTGAGAGGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000519435.5
CDS GCA 72 bp GGGTGCCCGGAAACAATCACGAGAAAGCCGGGCGAATaGCTGATGCAGGGACGCGGCGAGCCAGTCACTGCC +
Preference number: 6 (lower is better)
Translates to: GCPETITRKPGE*LMQGRGEPVTA
Trigger: GGCAGTGACTGGCTCGCCGCGTCCCTGCATCAGGCATTCGCCCGGCTTTCTCGTGATTGTTTCCGGGCACCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519435.5
CDS TCA 72 bp GCCCGGAAACAATCACGAGAAAGCCGGGCGAATGCCTaGTGCAGGGACGCGGCGAGCCAGTCACTGCCCTCA +
Preference number: 6 (lower is better)
Translates to: ARKQSRESRANA*CRDAASQSLPS
Trigger: TGAGGGCAGTGACTGGCTCGCCGCGTCCCTGCATCAGGCATTCGCCCGGCTTTCTCGTGATTGTTTCCGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519435.5
CDS TCA 72 bp AGGGCCGCTAAGCTCGACTTCACTCCTGCTGGGGGATaGCCCCCAACTGTGTCCCAGACACGGCTGTGTGGT +
Preference number: 6 (lower is better)
Translates to: RAAKLDFTPAGG*PPTVSQTRLCG
Trigger: ACCACACAGCCGTGTCTGGGACACAGTTGGGGGTCATCCCCCAGCAGGAGTGAAGTCGAGCTTAGCGGCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENST00000518298.5
ENST00000519435.5
ENST00000520020.5
ENST00000521180.5
ENST00000523634.1
CDS GCA 72 bp AGGACTGAACCTTGCCTTCCTGAGCCTGAGCCAAGATaGTTCCTACAGCTCCAAGGGGCCCCTGGGTGCAGC +
Preference number: 6 (lower is better)
Translates to: RTEPCLPEPEPR*FLQLQGAPGCS
Trigger: GCTGCACCCAGGGGCCCCTTGGAGCTGTAGGAAGCATCTTGGCTCAGGCTCAGGAAGGCAAGGTTCAGTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000522204.1
CDS CAA 90 bp ATGACACTGATAGGGTCTTTGGCAGGGATGGCACCAGGGGATCCCTaGCACCACTCAGCCAAGTTCAACACATTCCAGGTCCCACCAGGG +
Preference number: 6 (lower is better)
Translates to: MTLIGSLAGMAPGDP*HHSAKFNTFQVPPG
Trigger: CCCTGGTGGGACCTGGAATGTGTTGAACTTGGCTGAGTGGTGCAAGGGATCCCCTGGTGCCATCCCTGCCAAAGACCCTATCAGTGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000519924.5
CDS CAA 90 bp CCATCGGGAGATTTCATCCTCAGGCTCATGACACTGATAGGGTCTTaGGCAGGGATGGCACCAGGGGATCCCTTGCACCACTCAGCCAAG +
Preference number: 6 (lower is better)
Translates to: PSGDFILRLMTLIGS*AGMAPGDPLHHSAK
Trigger: CTTGGCTGAGTGGTGCAAGGGATCCCCTGGTGCCATCCCTGCCAAAGACCCTATCAGTGTCATGAGCCTGAGGATGAAATCTCCCGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000519924.5
ENST00000521627.1
ENST00000523634.1
CDS CCA 72 bp ATGTCCTTGTCCCCCTCCCCACAGCACTGTGACCTCTaGGACAGCAAGGAACAAGGACCGAGTAGTCTTTCC +
Preference number: 6 (lower is better)
Translates to: MSLSPSPQHCDL*DSKEQGPSSLS
Trigger: GGAAAGACTACTCGGTCCTTGTTCCTTGCTGTCCCAGAGGTCACAGTGCTGTGGGGAGGGGGACAAGGACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000522285.1
CDS CAA 72 bp ATAGGGTCTTTGGCAGGGATGGCACCAGGGGATCCCTaGCACCACTCAGCCAAGTTCAACACATTCCAGGTC +
Preference number: 6 (lower is better)
Translates to: IGSLAGMAPGDP*HHSAKFNTFQV
Trigger: GACCTGGAATGTGTTGAACTTGGCTGAGTGGTGCAAGGGATCCCCTGGTGCCATCCCTGCCAAAGACCCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000519924.5
CDS CAA 72 bp ATGAAATCTGAAAATGGTACCAACCCGTTTTCCTCGTaGGCGAGTCGGCCTCGCCTCCTCCTCCCGTCTCTT +
Preference number: 6 (lower is better)
Translates to: MKSENGTNPFSS*ASRPRLLLPSL
Trigger: AAGAGACGGGAGGAGGAGGCGAGGCCGACTCGCCAACGAGGAAAACGGGTTGGTACCATTTTCAGATTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519435.5
CDS TCA 72 bp GGGAGACTTAGCATGGGGAGAGGGCGTGAGGATTGGTaGGACAGTTTCTTTCCCTACTTGGCTCAGATATAC +
Preference number: 6 (lower is better)
Translates to: GRLSMGRGREDW*DSFFPYLAQIY
Trigger: GTATATCTGAGCCAAGTAGGGAAAGAAACTGTCTCACCAATCCTCACGCCCTCTCCCCATGCTAAGTCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000523854.5
ENST00000523855.1
CDS GCA 72 bp AGGTGGAGGGAACCTTTCCCTTCTCCGTTCCCATTTTaGTTAGCACCTGTGTATTTATATACGCAGCCTGAC +
Preference number: 6 (lower is better)
Translates to: RWREPFPSPFPF*LAPVYLYTQPD
Trigger: GTCAGGCTGCGTATATAAATACACAGGTGCTAAGCAAAATGGGAACGGAGAAGGGAAAGGTTCCCTCCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522285.1
CDS CAA 72 bp AAAGGAGATGAATGCAGGTGGGCCTCATCCAATAGGTaGAAGGCCTTAAGGGCAAAAACTGAGGTTCCCCAT +
Preference number: 6 (lower is better)
Translates to: KGDECRWASSNR*KALRAKTEVPH
Trigger: ATGGGGAACCTCAGTTTTTGCCCTTAAGGCCTTCAACCTATTGGATGAGGCCCACCTGCATTCATCTCCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000521627.1
CDS CAA 90 bp ACTTTAAGTAAAGGAGATGAATGCAGGTGGGCCTCATCCAATAGGTaGAAGGCCTTAAGGGCAAAAACTGAGGTTCCCCATCGGGAGATT +
Preference number: 6 (lower is better)
Translates to: TLSKGDECRWASSNR*KALRAKTEVPHREI
Trigger: AATCTCCCGATGGGGAACCTCAGTTTTTGCCCTTAAGGCCTTCAACCTATTGGATGAGGCCCACCTGCATTCATCTCCTTTACTTAAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000521627.1
CDS CCA 72 bp CTGAAAAACAGAAGAAAATACTCGGGAGACTTAGCATaGGGAGAGGGCGTGAGGATTGGTGAGACAGTTTCT +
Preference number: 6 (lower is better)
Translates to: LKNRRKYSGDLA*GEGVRIGETVS
Trigger: AGAAACTGTCTCACCAATCCTCACGCCCTCTCCCCATGCTAAGTCTCCCGAGTATTTTCTTCTGTTTTTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000523854.5
ENST00000523855.1
CDS CCA 72 bp GAACCTCAGTTTCTTCATCATGCTGTTGGGGAAAGATaGACATTCTCAACTCCACCACTCATCAGTAGAGGA +
Preference number: 6 (lower is better)
Translates to: EPQFLHHAVGER*TFSTPPLISRG
Trigger: TCCTCTACTGATGAGTGGTGGAGTTGAGAATGTCCATCTTTCCCCAACAGCATGATGAAGAAACTGAGGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000648219.1
CDS CCA 72 bp CGGCTGTGTGGTAGACCAACGCCATTCGTGGCATGTTaGCTTTGCTTGCATATATTTACCTTTTCAGAAAAT +
Preference number: 6 (lower is better)
Translates to: RLCGRPTPFVAC*LCLHIFTFSEN
Trigger: ATTTTCTGAAAAGGTAAATATATGCAAGCAAAGCCAACATGCCACGAATGGCGTTGGTCTACCACACAGCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000518298.5
ENST00000519435.5
ENST00000520020.5
ENST00000521180.5
ENST00000523634.1
CDS CCA 72 bp AATCAGTTAACTTTAAGTAAAGGAGATGAATGCAGGTaGGCCTCATCCAATAGGTTGAAGGCCTTAAGGGCA +
Preference number: 6 (lower is better)
Translates to: NQLTLSKGDECR*ASSNRLKALRA
Trigger: TGCCCTTAAGGCCTTCAACCTATTGGATGAGGCCCACCTGCATTCATCTCCTTTACTTAAAGTTAACTGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000521627.1