Pregenerated sensors for SSX3 (Homo sapiens)
Ensembl gene IDs: ENSG00000165584Ensembl transcript IDs: ENST00000376893.7, ENST00000612497.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACAATGTGTGTGACTCACTTTATTGCAGTGGTCTGGAACCGAACCTaGAGTATCTCTGAAGGACACCTGTATTGGGTAACAGGCATTGAG | + |
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Preference number: 1 (lower is better) Translates to: TMCVTHFIAVVWNRT*SISEGHLYWVTGIE Trigger: CTCAATGCCTGTTACCCAATACAGGTGTCCTTCAGAGATACTGCAGGTTCGGTTCCAGACCACTGCAATAAAGTGAGTCACACACATTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| 3UTR-3UTR TCA 90 bp | GTGGTCTGGAACCGAACCTGCAGTATCTCTGAAGGACACCTGTATTGGGTAACACTAGGAACCTGGAGCTaGGGAAATTTGGAAGACTTT | + |
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Preference number: 2 (lower is better) Translates to: VVWNRTCSISEGHLYWVTLGTWS*GNLEDF Trigger: AAAGTCTTCCAAATTTCCTCAGCTCCAGGTTCCTAG...TGTTACCCAATACAGGTGTCCTTCAGAGATACTGCAGGTTCGGTTCCAGACCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| 3UTR-3UTR CCA 90 bp | ACTTTATTGCAGTGGTCTGGAACCGAACCTGCAGTATCTCTGAAGGACACCTGTGGAGCTGAGGAAATTTaGAAGACTTTCCTCAAGTCA | + |
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Preference number: 2 (lower is better) Translates to: TLLQWSGTEPAVSLKDTCGAEEI*KTFLKS Trigger: TGACTTGAGGAAAGTCTTCCAAATTTCCTCAGCTCC...ACAGGTGTCCTTCAGAGATACTGCAGGTTCGGTTCCAGACCACTGCAATAAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| 3UTR-3UTR CCA 90 bp | GTGGTCTGGAACCGAACCTGCAGTATCTCTGAAGGACACCTGTATTGGGTAACATTTATTTCCATCTTATaGACTAGGAACCTGGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: VVWNRTCSISEGHLYWVTFISIL*TRNLEL Trigger: CAGCTCCAGGTTCCTAGTCCATAAGATGGAAATAAA...TGTTACCCAATACAGGTGTCCTTCAGAGATACTGCAGGTTCGGTTCCAGACCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| 3UTR GCA 72 bp | GTGACTCACTTTATTGCAGTGGTCTGGAACCGAACCTaGAGTATCTCTGAAGGACACCTGTATTGGGTAACA | + |
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Preference number: 3 (lower is better) Translates to: VTHFIAVVWNRT*SISEGHLYWVT Trigger: TGTTACCCAATACAGGTGTCCTTCAGAGATACTGCAGGTTCGGTTCCAGACCACTGCAATAAAGTGAGTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| 3UTR TCA 72 bp | TCTTTATTTCCATCTTATGGACTAGGAACCTGGAGCTaGGGAAATTTGGAAGACTTTCCTCAAGTCACGTGG | + |
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Preference number: 3 (lower is better) Translates to: SLFPSYGLGTWS*GNLEDFPQVTW Trigger: CCACGTGACTTGAGGAAAGTCTTCCAAATTTCCTCAGCTCCAGGTTCCTAGTCCATAAGATGGAAATAAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| CDS-3UTR TCA 90 bp | GTTTTGTGTCTTCTGACTGCTCCACCGATGAGCTGTTCCGCGTCTCTCTTCCTTCTGGCTTCTTGGGCATaGTCTTCGGGAAGATTCCCT | + |
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Preference number: 4 (lower is better) Translates to: VLCLLTAPPMSCSASLFLLASWA*SSGRFP Trigger: AGGGAATCTTCCCGAAGATCATGCCCAAGAAGCCAG...AAGGAAGAGAGACGCGGAACAGCTCATCGGTGGAGCAGTCAGAAGACACAAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000376893.7 |
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| CDS-3UTR CCA 90 bp | TCTTCTGACTGCTCCACCGATGAGCTGTTCCGCGTCTCTCTTCCTTTTCTTGGGTTTATTGCAGTGGTCTaGAACCGAACCTGCAGTATC | + |
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Preference number: 4 (lower is better) Translates to: SSDCSTDELFRVSLPFLGFIAVV*NRTCSI Trigger: GATACTGCAGGTTCGGTTCCAGACCACTGCAATAAA...CCCAAGAAAAGGAAGAGAGACGCGGAACAGCTCATCGGTGGAGCAGTCAGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000376893.7 |
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| CDS-3UTR TCA 90 bp | AACAATGTGTGTGACTCACTTTATTGCAGTGGTCTGGAACCGAACCTGCAGTATCTGGCTTCTTGGGCATaGTCTTCGGGAAGATTCCCT | + |
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Preference number: 4 (lower is better) Translates to: NNVCDSLYCSGLEPNLQYLASWA*SSGRFP Trigger: AGGGAATCTTCCCGAAGATCATGCCCAAGAAGCCAG...ATACTGCAGGTTCGGTTCCAGACCACTGCAATAAAGTGAGTCACACACATTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| CDS-3UTR CCA 90 bp | ACTTTATTGCAGTGGTCTGGAACCGAACCTGCAGTATCTCTGAAGGACACCTGTGAAGGACACCTGTATTaGGTAACAGGCATTGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: TLLQWSGTEPAVSLKDTCEGHLY*VTGIEL Trigger: CAGCTCAATGCCTGTTACCCAATACAGGTGTCCTTC...ACAGGTGTCCTTCAGAGATACTGCAGGTTCGGTTCCAGACCACTGCAATAAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| CDS-3UTR TCA 90 bp | GTGACTCACTTTATTGCAGTGGTCTGGAACCGAACCTGCAGTATCTCTGAAGGACTAGGAACCTGGAGCTaGGGAAATTTGGAAGACTTT | + |
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Preference number: 4 (lower is better) Translates to: VTHFIAVVWNRTCSISEGLGTWS*GNLEDF Trigger: AAAGTCTTCCAAATTTCCTCAGCTCCAGGTTCCTAG...TCCTTCAGAGATACTGCAGGTTCGGTTCCAGACCACTGCAATAAAGTGAGTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| CDS-3UTR CCA 90 bp | TGGACTAGGAACCTGGAGCTGAGGAAATTTGGAAGACTTTCCTCAAGTCACGTGGGAGCTGAGGAAATTTaGAAGACTTTCCTCAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: WTRNLELRKFGRLSSSHVGAEEI*KTFLKS Trigger: TGACTTGAGGAAAGTCTTCCAAATTTCCTCAGCTCC...CACGTGACTTGAGGAAAGTCTTCCAAATTTCCTCAGCTCCAGGTTCCTAGTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| CDS-3UTR CCA 90 bp | AGGAACCTGGAGCTGAGGAAATTTGGAAGACTTTCCTCAAGTCACGTGGTTTTTTTTATTGCAGTGGTCTaGAACCGAACCTGCAGTATC | + |
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Preference number: 4 (lower is better) Translates to: RNLELRKFGRLSSSHVVFFIAVV*NRTCSI Trigger: GATACTGCAGGTTCGGTTCCAGACCACTGCAATAAA...AAAAACCACGTGACTTGAGGAAAGTCTTCCAAATTTCCTCAGCTCCAGGTTCCT 44% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| CDS-3UTR CCA 90 bp | TGGACTAGGAACCTGGAGCTGAGGAAATTTGGAAGACTTTCCTCAAGTCACGTGTTTATTTCCATCTTATaGACTAGGAACCTGGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: WTRNLELRKFGRLSSSHVFISIL*TRNLEL Trigger: CAGCTCCAGGTTCCTAGTCCATAAGATGGAAATAAA...CACGTGACTTGAGGAAAGTCTTCCAAATTTCCTCAGCTCCAGGTTCCTAGTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| CDS-3UTR CAA 90 bp | GTTTTGTGTCTTCTGACTGCTCCACCGATGAGCTGTTCCGCGTCTCTCTTCCTTAGTCATCTGAGGACGTaGAACCTGATTCCCACGGTT | + |
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Preference number: 5 (lower is better) Translates to: VLCLLTAPPMSCSASLFLSHLRT*NLIPTV Trigger: AACCGTGGGAATCAGGTTCAACGTCCTCAGATGACT...AAGGAAGAGAGACGCGGAACAGCTCATCGGTGGAGCAGTCAGAAGACACAAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000376893.7 |
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| CDS CCA 90 bp | GCGTCTCTCTTCCTTTTCTTGGGCCTCCCTATTTCTTTATTGCAGTaGTCTGGAACCGAACCTGCAGTATCTCTGAAGGACACCAGATAT | + |
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Preference number: 5 (lower is better) Translates to: ASLFLFLGLPISLLQ*SGTEPAVSLKDTRY Trigger: ATATCTGGTGTCCTTCAGAGATACTGCAGGTTCGGTTCCAGACCACTGCAATAAAGAAATAGGGAGGCCCAAGAAAAGGAAGAGAGACGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000376893.7 |
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| CDS-3UTR CAA 90 bp | GTTTTGTGTCTTCTGACTGCTCCACCGATGAGCTGTTCCGCGTCTCTCTTCCTTATCATCGAAGGCCTTTaGTATCTTCTCTGGTATTTG | + |
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Preference number: 5 (lower is better) Translates to: VLCLLTAPPMSCSASLFLIIEGL*YLLWYL Trigger: CAAATACCAGAGAAGATACAAAAGGCCTTCGATGAT...AAGGAAGAGAGACGCGGAACAGCTCATCGGTGGAGCAGTCAGAAGACACAAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000376893.7 |
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| CDS-3UTR CAA 90 bp | TTATGGACTAGGAACCTGGAGCTGAGGAAATTTGGAAGACTTTCCTCAAGTCACAGTCATCTGAGGACGTaGAACCTGATTCCCACGGTT | + |
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Preference number: 5 (lower is better) Translates to: LWTRNLELRKFGRLSSSHSHLRT*NLIPTV Trigger: AACCGTGGGAATCAGGTTCAACGTCCTCAGATGACT...GTGACTTGAGGAAAGTCTTCCAAATTTCCTCAGCTCCAGGTTCCTAGTCCATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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| CDS-3UTR CAA 90 bp | ACTTTATTGCAGTGGTCTGGAACCGAACCTGCAGTATCTCTGAAGGACACCTGTATCATCGAAGGCCTTTaGTATCTTCTCTGGTATTTG | + |
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Preference number: 5 (lower is better) Translates to: TLLQWSGTEPAVSLKDTCIIEGL*YLLWYL Trigger: CAAATACCAGAGAAGATACAAAAGGCCTTCGATGAT...ACAGGTGTCCTTCAGAGATACTGCAGGTTCGGTTCCAGACCACTGCAATAAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612497.1 |
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