RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SSX2IP (Homo sapiens)

Ensembl gene IDs: ENSG00000117155

Ensembl transcript IDs: ENST00000342203.8, ENST00000422026.1, ENST00000437941.6, ENST00000459708.1, ENST00000460500.1, ENST00000476905.6, ENST00000481102.5, ENST00000490476.1, ENST00000603677.1

Found 274 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCGGCTGAACTGCCAGTACAGGGGAAGGTAAATGGGCCTAAACTATaGTACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGA +
Preference number: 1 (lower is better)
Translates to: AAELPVQGKVNGPKL*YLARVGSVQASMYR
Trigger: TCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTATCATAGTTTAGGCCCATTTACCTTCCCCTGTACTGGCAGTTCAGCCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR CCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTaGCCTTCCACTCAGCTCAGATTCCTAATAGCAGGCAGCGTGCTT +
Preference number: 1 (lower is better)
Translates to: VRSIHHCLLQCRFNS*PSTQLRFLIAGSVL
Trigger: AAGCACGCTGCCTGCTATTAGGAATCTGAGCTGAGTGGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR CCA 90 bp CTAATAGCAGGCAGCGTGCTTATCTGTCTTCATATCACCAAGGATTaGAAAGCAGTAGTAAGCCTTGACATACAGCAGGTACTTAATAAA +
Preference number: 1 (lower is better)
Translates to: LIAGSVLICLHITKD*KAVVSLDIQQVLNK
Trigger: TTTATTAAGTACCTGCTGTATGTCAAGGCTTACTACTGCTTTCCAATCCTTGGTGATATGAAGACAGATAAGCACGCTGCCTGCTATTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR CCA 90 bp TACATAGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATaGAAGTACACTCTAGAACCATCATCTATCATGGCTAAATGTGAG +
Preference number: 1 (lower is better)
Translates to: YIVINKKALIRRTYK*KYTLEPSSIMAKCE
Trigger: CTCACATTTAGCCATGATAGATGATGGTTCTAGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACTATGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR TCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGGTGCATGTAAGCGGCTaGACTGCCAGTACAGGGGAA +
Preference number: 2 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVVHVSG*TASTGE
Trigger: TTCCCCTGTACTGGCAGTTCAGCCGCTTACATGCAC...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR GCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGAGACTAGATTCACGGTaGTCTCTTCATCATGCGCAC +
Preference number: 2 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGRLDSR*SLHHAH
Trigger: GTGCGCATGATGAAGAGAGCACCGTGAATCTAGTCT...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR GCA 90 bp TCAAGGAGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTGCGGCTGCCTCGAGTaGACTATAAGATTGTCCCAA +
Preference number: 2 (lower is better)
Translates to: SRSIHYSNLPVIQVLMPHCGCLE*TIRLSQ
Trigger: TTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCA...GTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476905.6
3UTR-3UTR GCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGGTGCTCTCTTCATCATaGGCACAAAATGTGTTTTCC +
Preference number: 2 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGVLSSS*AQNVFS
Trigger: GGAAAACACATTTTGTGCGCATGATGAAGAGAGCAC...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR GCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGGTACTTTTGTCGTCTTaGCCCTATTCTTCTATCATC +
Preference number: 2 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGVLLSS*PYSSII
Trigger: GATGATAGAAGAATAGGGGCAAGACGACAAAAGTAC...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGAGGAGGACTTACAAATaGAAGTACACTCTAGAACCA +
Preference number: 2 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGRRTYK*KYTLEP
Trigger: TGGTTCTAGAGTGTACTTCCATTTGTAAGTCCTCCT...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR TCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGGTTATTAGAGATAACTaGCTTTATGACACACCCTGT +
Preference number: 2 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGVIRDN*LYDTPC
Trigger: ACAGGGTGTGTCATAAAGTCAGTTATCTCTAATAAC...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR TCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCGTGCATGTAAGCGGCTaGACTGCCAGTACAGGGGAA +
Preference number: 2 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSVHVSG*TASTGE
Trigger: TTCCCCTGTACTGGCAGTTCAGCCGCTTACATGCAC...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR TCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGACATTGAAGGTGCAATaGGTCTGGCTTTTACTCTGC +
Preference number: 2 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVTLKVQ*VWLLLC
Trigger: GCAGAGTAAAAGCCAGACTCATTGCACCTTCAATGT...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGATACCTAGCAAGGGTTaGATCTGTGCAGGCTTCTAT +
Preference number: 2 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVIPSKG*ICAGFY
Trigger: ATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGTTGCAAAGTACACCATaGAAAACCCTCGGGGGAAAA +
Preference number: 2 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVLQSTP*KTLGGK
Trigger: TTTTCCCCCGAGGGTTTTCCATGGTGTACTTTGCAA...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR CAA 90 bp AGCTCAAGGAGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTaGATGCCACACTCCATTTTTGATTTGTACATTCTCCTCCAACCT +
Preference number: 2 (lower is better)
Translates to: SSRSIHYSNLPVIQV*MPHSIFDLYILLQP
Trigger: AGGTTGGAGGAGAATGTACAAATCAAAAATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
3UTR-3UTR TCA 90 bp TCAAGGAGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTTCCTGAGAAGGCACTaGAAAGTTTCACATTTTCTG +
Preference number: 2 (lower is better)
Translates to: SRSIHYSNLPVIQVLMPHFLRRH*KVSHFL
Trigger: CAGAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAA...GTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000476905.6
3UTR-3UTR GCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGGTACTTTTGTCGTCTTaGCCCTATTCTTCTATCATC +
Preference number: 2 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGVLLSS*PYSSII
Trigger: GATGATAGAAGAATAGGGGCAAGACGACAAAAGTAC...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR GCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGATCATAGACTGCAGATaGAAACATTTAATGGTGAAC +
Preference number: 2 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGIIDCR*KHLMVN
Trigger: GTTCACCATTAAATGTTTGCATCTGCAGTCTATGAT...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGAACCATCATCTATCATaGCTAAATGTGAGATTAGCA +
Preference number: 2 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGNHHLS*LNVRLA
Trigger: TGCTAATCTCACATTTAGCCATGATAGATGATGGTT...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR GCA 90 bp TCAAGGAGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACGTCATATTTAGAAACTaGTGCTTTAACCAACTGGCT +
Preference number: 2 (lower is better)
Translates to: SRSIHYSNLPVIQVLMPHVIFRN*CFNQLA
Trigger: AGCCAGTTGGTTAAAGCAGCAGTTTCTAAATATGAC...GTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476905.6
3UTR-3UTR CCA 90 bp ACTGTGAGGCTTCTTTTGCGGCTGCCTCGAGTGCACTATAAGATTGTCCCAATCACATTTTCTGAGTTCTaGTGGTCAAAGGTAGTCATA +
Preference number: 2 (lower is better)
Translates to: TVRLLLRLPRVHYKIVPITFSEF*WSKVVI
Trigger: TATGACTACCTTTGACCACCAGAACTCAGAAAATGT...GATTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000476905.6
3UTR-3UTR CCA 90 bp TATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTTTTGATTTGATGCAGGAACGTGTCTaGCAAAAGTCTGAAGTGGAA +
Preference number: 2 (lower is better)
Translates to: YSNLPVIQVLMPHSIFDLMQERV*QKSEVE
Trigger: TTCCACTTCAGACTTTTGCCAGACACGTTCCTGCAT...CAAATCAAAAATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000476905.6
3UTR-3UTR TCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCAATGGGCCTAAACTATaGTACCTAGCAAGGGTTGGA +
Preference number: 2 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSNGPKL*YLARVG
Trigger: TCCAACCCTTGCTAGGTATCATAGTTTAGGCCCATT...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGCAGATATTACTATACTaGTACCCATCTTGTAAGGAA +
Preference number: 2 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVQILLY*YPSCKE
Trigger: TTCCTTACAAGATGGGTACCAGTATAGTAATATCTG...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCTTGCAAAGTACACCATaGAAAACCCTCGGGGGAAAA +
Preference number: 2 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSLQSTP*KTLGGK
Trigger: TTTTCCCCCGAGGGTTTTCCATGGTGTACTTTGCAA...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR TCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTGATCTATGCAGACATTaGAGGTGCAATGAGTCTGGC +
Preference number: 2 (lower is better)
Translates to: SLTLQYFLSSQESIICKCDLCRH*RCNESG
Trigger: GCCAGACTCATTGCACCTTCAATGTCTGCATAGATC...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR GCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTCAAGGGTTGGATCTGTaGAGGCTTCTATGTACAGAG +
Preference number: 2 (lower is better)
Translates to: SLTLQYFLSSQESIICKCQGLDL*RLLCTE
Trigger: CTCTGTACATAGAAGCCTGCACAGATCCAACCCTTG...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTCAGGAGTTTTGTGTGTaGAGTCCTGGGTTTTCCAAC +
Preference number: 2 (lower is better)
Translates to: SLTLQYFLSSQESIICKCQEFCV*SPGFSN
Trigger: GTTGGAAAACCCAGGACTCCACACACAAAACTCCTG...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTAAAACAAATGTGGCCTaGAGCAGACCCATCAGTCCA +
Preference number: 2 (lower is better)
Translates to: SLTLQYFLSSQESIICKCKTNVA*SRPISP
Trigger: TGGACTGATGGGTCTGCTCCAGGCCACATTTGTTTT...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR TCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATATCCTGGGAAAGAGCTaGGCCTACATTTATTATTAT +
Preference number: 2 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDILGKS*AYIYYY
Trigger: ATAATAATAAATGTAGGCTCAGCTCTTTCCCAGGAT...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR TCA 90 bp TTTCTATTCCTCTCTGTCTTACTAGGAATGTTCTACCTGCTTCCTCTTCTTCGTTCTTGGAATTGGCACTaGAGCAGAGTATTGATCTTA +
Preference number: 2 (lower is better)
Translates to: FLFLSVLLGMFYLLPLLRSWNWH*SRVLIL
Trigger: TAAGATCAATACTCTGCTTCAGTGCCAATTCCAAGA...ACGAAGAAGAGGAAGCAGGTAGAACATTCCTAGTAAGACAGAGAGGAATAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
3UTR-3UTR TCA 90 bp AAACACCAAAATGTAGCAATTAAGAGCAACATATGGGTTTCCCAGGGTGGAGAGCATTCTCCTCCAACCTaGTTTGGTTTAATTTCTTCA +
Preference number: 2 (lower is better)
Translates to: KHQNVAIKSNIWVSQGGEHSPPT*FGLISS
Trigger: TGAAGAAATTAAACCAAATCAGGTTGGAGGAGAATG...CTCTCCACCCTGGGAAACCCATATGTTGCTCTTAATTGCTACATTTTGGTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481102.5
3UTR-3UTR CCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTATACCTAGCAAGGGTTaGATCTGTGCAGGCTTCTAT +
Preference number: 2 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSIPSKG*ICAGFY
Trigger: ATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCGATTGGGGATCATTCTaGAGTTGGAATGTTCAACAA +
Preference number: 2 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSDWGSF*SWNVQQ
Trigger: TTGTTGAACATTCCAACTCCAGAATGATCCCCAATC...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCGTCTATGAACAATTCTaGTTAGCTAAGGTAGGCAGT +
Preference number: 2 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSVYEQF*LAKVGS
Trigger: ACTGCCTACCTTAGCTAACCAGAATTGTTCATAGAC...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAGGTTTAATAGTTaGCCTTCCACTCAGCTCAGA +
Preference number: 2 (lower is better)
Translates to: LHMSLTLQYFLSSQESIICRFNS*PSTQLR
Trigger: TCTGAGCTGAGTGGAAGGCCAACTATTAAACCTACA...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp CTAGTGTATTTCCAGCATCTAGCACAGTGTCTATATATACTGGACACTCAATATATTAAGAGCAACATATaGGTTTCCCAGGGTGGAGAG +
Preference number: 2 (lower is better)
Translates to: LVYFQHLAQCLYILDTQYIKSNI*VSQGGE
Trigger: CTCTCCACCCTGGGAAACCCATATGTTGCTCTTAAT...ATATTGAGTGTCCAGTATATATAGACACTGTGCTAGATGCTGGAAATACACTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000603677.1
3UTR-3UTR TCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCATCCTGGGAAAGAGCTaGGCCTACATTTATTATTAT +
Preference number: 2 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSILGKS*AYIYYY
Trigger: ATAATAATAAATGTAGGCTCAGCTCTTTCCCAGGAT...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATCAGATATTACTATACTaGTACCCATCTTGTAAGGAA +
Preference number: 2 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDQILLY*YPSCKE
Trigger: TTCCTTACAAGATGGGTACCAGTATAGTAATATCTG...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTGATTGGGGATCATTCTaGAGTTGGAATGTTCAACAA +
Preference number: 2 (lower is better)
Translates to: LHMSLTLQYFLSSQESIIDWGSF*SWNVQQ
Trigger: TTGTTGAACATTCCAACTCCAGAATGATCCCCAATC...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTACACCTAGAAAGAGATaGGAAACAAAATCCCAGGAG +
Preference number: 2 (lower is better)
Translates to: SLTLQYFLSSQESIICKCTPRKR*ETKSQE
Trigger: CTCCTGGGATTTTGTTTCCCATCTCTTTCTAGGTGT...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTTGTAGGTTTAATAGTTaGCCTTCCACTCAGCTCAGA +
Preference number: 2 (lower is better)
Translates to: SLTLQYFLSSQESIICKCCRFNS*PSTQLR
Trigger: TCTGAGCTGAGTGGAAGGCCAACTATTAAACCTACA...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR TCA 90 bp CTTTTTCTACATGAGAATTTGTGTAGCTCAAGGAGCATCCACTATAGCAACCTTCATTCTCCTCCAACCTaGTTTGGTTTAATTTCTTCA +
Preference number: 2 (lower is better)
Translates to: LFLHENLCSSRSIHYSNLHSPPT*FGLISS
Trigger: TGAAGAAATTAAACCAAATCAGGTTGGAGGAGAATG...AAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAGAAAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
3UTR-3UTR GCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTTTCATTATCCTTATCTaGATGGACCAAGTCTTTGGG +
Preference number: 2 (lower is better)
Translates to: SLTLQYFLSSQESIICKCFIILI*MDQVFG
Trigger: CCCAAAGACTTGGTCCATGCAGATAAGGATAATGAA...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTGTTACGTATAGTGAATaGACAACACAAATAGGTGGG +
Preference number: 2 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSVTYSE*TTQIGG
Trigger: CCCACCTATTTGTGTTGTCCATTCACTATACGTAAC...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTGTCTATGAACAATTCTaGTTAGCTAAGGTAGGCAGT +
Preference number: 2 (lower is better)
Translates to: SLTLQYFLSSQESIICKCVYEQF*LAKVGS
Trigger: ACTGCCTACCTTAGCTAACCAGAATTGTTCATAGAC...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTGCTAAGACTTATAAATaGAAGCCTAGCCACGTTACT +
Preference number: 2 (lower is better)
Translates to: SLTLQYFLSSQESIICKCAKTYK*KPSHVT
Trigger: AGTAACGTGGCTAGGCTTCCATTTATAAGTCTTAGC...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR TCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTGTTATTAGAGATAACTaGCTTTATGACACACCCTGT +
Preference number: 2 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSVIRDN*LYDTPC
Trigger: ACAGGGTGTGTCATAAAGTCAGTTATCTCTAATAAC...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR GCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTTCGGGGGAAAATTGTTaGCAAATGTATCCATTAACT +
Preference number: 2 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSSGENC*QMYPLT
Trigger: AGTTAATGGATACATTTGGCAACAATTTTCCCCCGA...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTAACCATCATCTATCATaGCTAAATGTGAGATTAGCA +
Preference number: 2 (lower is better)
Translates to: LHMSLTLQYFLSSQESIINHHLS*LNVRLA
Trigger: TGCTAATCTCACATTTAGCCATGATAGATGATGGTT...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp TCAAGGAGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACACTGTGAGGCTTCTTTaGCGGCTGCCTCGAGTGCAC +
Preference number: 3 (lower is better)
Translates to: SRSIHYSNLPVIQVLMPHTVRLL*RLPRVH
Trigger: GTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT...GTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476905.6
3UTR TCA 72 bp CTGCCAGTACAGGGGAAGGTAAATGGGCCTAAACTATaGTACCTAGCAAGGGTTGGATCTGTGCAGGCTTCT +
Preference number: 3 (lower is better)
Translates to: LPVQGKVNGPKL*YLARVGSVQAS
Trigger: AGAAGCCTGCACAGATCCAACCCTTGCTAGGTATCATAGTTTAGGCCCATTTACCTTCCCCTGTACTGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGCTCGGGGGAAAATTGTaGCCAAATGTATCCATTAAC +
Preference number: 3 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGLGGKL*PNVSIN
Trigger: GTTAATGGATACATTTGGCAACAATTTTCCCCCGAG...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGGGGATCATTCTGGAGTaGGAATGTTCAACAAAAGTG +
Preference number: 3 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGGIILE*ECSTKV
Trigger: CACTTTTGTTGAACATTCCAACTCCAGAATGATCCC...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
49% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGCTCAGTCTAGTGCTTTaGTTTCCATCCAAACATCTA +
Preference number: 3 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGLSLVL*FPSKHL
Trigger: TAGATGTTTGGATGGAAACAAAAGCACTAGACTGAG...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGGGTACTTTTGTCGTCTaGCCCCTATTCTTCTATCAT +
Preference number: 3 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGGTFVV*PLFFYH
Trigger: ATGATAGAAGAATAGGGGCAAGACGACAAAAGTACC...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGTATTCAAAGGTACTTTaGTCGTCTTGCCCCTATTCT +
Preference number: 3 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGYSKVL*SSCPYS
Trigger: AGAATAGGGGCAAGACGACAAAAGTACCTTTGAATA...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR CCA 72 bp GGCAGCGTGCTTATCTGTCTTCATATCACCAAGGATTaGAAAGCAGTAGTAAGCCTTGACATACAGCAGGTA +
Preference number: 3 (lower is better)
Translates to: GSVLICLHITKD*KAVVSLDIQQV
Trigger: TACCTGCTGTATGTCAAGGCTTACTACTGCTTTCCAATCCTTGGTGATATGAAGACAGATAAGCACGCTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATGGTACTTTTGTCGTCTaGCCCCTATTCTTCTATCAT +
Preference number: 3 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDGTFVV*PLFFYH
Trigger: ATGATAGAAGAATAGGGGCAAGACGACAAAAGTACC...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCCTCGGGGGAAAATTGTaGCCAAATGTATCCATTAAC +
Preference number: 3 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSLGGKL*PNVSIN
Trigger: GTTAATGGATACATTTGGCAACAATTTTCCCCCGAG...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp AAACACCAAAATGTAGCAATTAAGAGCAACATATGGGTTTCCCAGGGTGGAGAGTTTCTACATGAGAATTaGTGTAGCTCAAGGAGCATC +
Preference number: 3 (lower is better)
Translates to: KHQNVAIKSNIWVSQGGEFLHEN*CSSRSI
Trigger: GATGCTCCTTGAGCTACACAAATTCTCATGTAGAAA...CTCTCCACCCTGGGAAACCCATATGTTGCTCTTAATTGCTACATTTTGGTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481102.5
3UTR-3UTR CAA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTAATCACAGCAGGGTCTaGCTAACTCACAAATTTAGC +
Preference number: 3 (lower is better)
Translates to: LHMSLTLQYFLSSQESIINHSRV*LTHKFS
Trigger: GCTAAATTTGTGAGTTAGCAAGACCCTGCTGTGATT...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp ACAGGAAAACACCAAAATGTAGCAATTAAGAGCAACATATGGGTTTCCCAGGGTTTTACACTGTCATCCTaGGGCACAAATCTTTTTCAC +
Preference number: 3 (lower is better)
Translates to: TGKHQNVAIKSNIWVSQGFTLSS*GTNLFH
Trigger: GTGAAAAAGATTTGTGCCCAAGGATGACAGTGTAAA...ACCCTGGGAAACCCATATGTTGCTCTTAATTGCTACATTTTGGTGTTTTCCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
3UTR TCA 72 bp TCTCATAAGACACTCTTAATGATATCCTATCAGCCCTaGAAAAATGGCTGCTGCTATGCAACTCCAAAGAGT +
Preference number: 3 (lower is better)
Translates to: SHKTLLMISYQP*KNGCCYATPKS
Trigger: ACTCTTTGGAGTTGCATAGCAGCAGCCATTTTTTCAGGGCTGATAGGATATCATTAAGAGTGTCTTATGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTATTCAAAGGTACTTTaGTCGTCTTGCCCCTATTCT +
Preference number: 3 (lower is better)
Translates to: LHMSLTLQYFLSSQESIIYSKVL*SSCPYS
Trigger: AGAATAGGGGCAAGACGACAAAAGTACCTTTGAATA...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR-3UTR CAA 90 bp TTTCTATTCCTCTCTGTCTTACTAGGAATGTTCTACCTGCTTCCTCTTCTTCGTAAACTAATCTTGGAATaGGCACTGAAGCAGAGTATT +
Preference number: 3 (lower is better)
Translates to: FLFLSVLLGMFYLLPLLRKLILE*ALKQSI
Trigger: AATACTCTGCTTCAGTGCCAATTCCAAGATTAGTTT...ACGAAGAAGAGGAAGCAGGTAGAACATTCCTAGTAAGACAGAGAGGAATAGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
3UTR-3UTR CAA 90 bp TTTCTATTCCTCTCTGTCTTACTAGGAATGTTCTACCTGCTTCCTCTTCTTCGTCCAAAATCTCTATTGTaGCTAATACTACAGACATGC +
Preference number: 3 (lower is better)
Translates to: FLFLSVLLGMFYLLPLLRPKSLL*LILQTC
Trigger: GCATGTCTGTAGTATTAGCAACAATAGAGATTTTGG...ACGAAGAAGAGGAAGCAGGTAGAACATTCCTAGTAAGACAGAGAGGAATAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000603677.1
3UTR CCA 72 bp ACAAAAGTGATGTTGTTAGGTAAAATGTACAACTTCTaGATCTATGCAGACATTGAAGGTGCAATGAGTCTG +
Preference number: 3 (lower is better)
Translates to: TKVMLLGKMYNF*IYADIEGAMSL
Trigger: CAGACTCATTGCACCTTCAATGTCTGCATAGATCCAGAAGTTGTACATTTTACCTAACAACATCACTTTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR CCA 72 bp ATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATaGAAGTACACTCTAGAACCATCATCTATCATGGCT +
Preference number: 3 (lower is better)
Translates to: INKKALIRRTYK*KYTLEPSSIMA
Trigger: AGCCATGATAGATGATGGTTCTAGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR TCA 72 bp CTAGGTACATGTATTTCTGAAGCTCAAATATATGAATaGGGTGGATCTTTATCAGGAGCTTCATATGTCACT +
Preference number: 3 (lower is better)
Translates to: LGTCISEAQIYE*GGSLSGASYVT
Trigger: AGTGACATATGAAGCTCCTGATAAAGATCCACCTCATTCATATATTTGAGCTTCAGAAATACATGTACCTAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
3UTR GCA 72 bp AAAAGGATTAGAGTGAGCAATTTCATTATCCTTATCTaGATGGACCAAGTCTTTGGGAATGCTTTTTCTACT +
Preference number: 3 (lower is better)
Translates to: KRIRVSNFIILI*MDQVFGNAFST
Trigger: AGTAGAAAAAGCATTCCCAAAGACTTGGTCCATGCAGATAAGGATAATGAAATTGCTCACTCTAATCCTTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGCGAACAACGGGGCGCTaGGCCAGGTGCCGGCTCTCA +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGRTTGR*ARCRLS
Trigger: TGAGAGCCGGCACCTGGCTCAGCGCCCCGTTGTTCG...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000437941.6
CDS-3UTR GCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGCCCGACGCGAGGCGCTaGTGCTCACCGTCACGGCCC +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGPDARR*CSPSRP
Trigger: GGGCCGTGACGGTGAGCAGCAGCGCCTCGCGTCGGG...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000437941.6
CDS-3UTR GCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGGACGCGAGGCGCTGCTaGTCACCGTCACGGCCCCCG +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVDARRC*SPSRPP
Trigger: CGGGGGCCGTGACGGTGAGCAGCAGCGCCTCGCGTC...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000437941.6
CDS-3UTR GCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGCGCTCGCCCGCACCCTaGAACGGCCCCAACAGCCGC +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVRSPAP*NGPNSR
Trigger: GCGGCTGTTGGGGCCGTTGCAGGGTGCGGGCGAGCG...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000437941.6
CDS-3UTR GCA 90 bp TACACTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTCCGCTCGCCCGCACCCTaGAACGGCCCCAACAGCCGC +
Preference number: 4 (lower is better)
Translates to: YTVILGHKSFSLNRNRLFRSPAP*NGPNSR
Trigger: GCGGCTGTTGGGGCCGTTGCAGGGTGCGGGCGAGCG...GAAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAGTGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR TCA 90 bp CTACATGAGAATTTGTGTAGCTCAAGGAGCATCCACTATAGCAACCTTCCTGTGCGAACAACGGGGCGCTaGGCCAGGTGCCGGCTCTCA +
Preference number: 4 (lower is better)
Translates to: LHENLCSSRSIHYSNLPVRTTGR*ARCRLS
Trigger: TGAGAGCCGGCACCTGGCTCAGCGCCCCGTTGTTCG...CACAGGAAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR TCA 90 bp AAACACCAAAATGTAGCAATTAAGAGCAACATATGGGTTTCCCAGGGTGGAGAGCGAACAACGGGGCGCTaGGCCAGGTGCCGGCTCTCA +
Preference number: 4 (lower is better)
Translates to: KHQNVAIKSNIWVSQGGERTTGR*ARCRLS
Trigger: TGAGAGCCGGCACCTGGCTCAGCGCCCCGTTGTTCG...CTCTCCACCCTGGGAAACCCATATGTTGCTCTTAATTGCTACATTTTGGTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR GCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGTGCGGCTGCCTCGAGTaGACTATAAGATTGTCCCAA +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGCGCLE*TIRLSQ
Trigger: TTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCA...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGGGTATCATCATCATATaGAGTAGCGAGCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGGIIII*SSELLL
Trigger: CAGCAGCAGCTCGCTACTGCATATGATGATGATACC...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGCAAGGGTTGGATCTGTaGAGGCTTCTATGTACAGAG +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGQGLDL*RLLCTE
Trigger: CTCTGTACATAGAAGCCTGCACAGATCCAACCCTTG...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TCAAGGAGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACAGAAGGTTCTTCCGCTaGAGCACAAGCAGCTCATTC +
Preference number: 4 (lower is better)
Translates to: SRSIHYSNLPVIQVLMPHRRFFR*STSSSF
Trigger: GAATGAGCTGCTTGTGCTTCAGCGGAAGAACCTTCT...GTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR TCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGGTCTCCACATTTTCCTaGGCTAGAAGGTTCTTCCGC +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGVSTFS*ARRFFR
Trigger: GCGGAAGAACCTTCTAGCTCAGGAAAATGTGGAGAC...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGAATGGGCCTAAACTATaGTACCTAGCAAGGGTTGGA +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGNGPKL*YLARVG
Trigger: TCCAACCCTTGCTAGGTATCATAGTTTAGGCCCATT...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGTTGCAAAGTACACCATaGAAAACCCTCGGGGGAAAA +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGLQSTP*KTLGGK
Trigger: TTTTCCCCCGAGGGTTTTCCATGGTGTACTTTGCAA...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp AGACCCATTAGACACACTGTGAGGCTTCTTTTGCGGCTGCCTCGAGTGCACTATGGGACCATTCTTCTTTaGGACGTTCCTTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: RPIRHTVRLLLRLPRVHYGTILL*DVPFLP
Trigger: TGGAAGAAAAGGAACGTCTCAAAGAAGAATGGTCCC...ATAGTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGTGTGTCTAATGGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000476905.6
CDS-3UTR TCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGGATCTATGCAGACATTaGAGGTGCAATGAGTCTGGC +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGDLCRH*RCNESG
Trigger: GCCAGACTCATTGCACCTTCAATGTCTGCATAGATC...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGCATTACAGTACTTCCTaGGCTCTCAGGAATCCATTA +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGHYSTS*ALRNPL
Trigger: TAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATG...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp AGACCCATTAGACACACTGTGAGGCTTCTTTTGCGGCTGCCTCGAGTGCACTATCTGACCGTGGATGAATaGTGGATACCCAAAAGAGAT +
Preference number: 4 (lower is better)
Translates to: RPIRHTVRLLLRLPRVHYLTVDE*WIPKRD
Trigger: ATCTCTTTTGGGTATCCATCATTCATCCACGGTCAG...ATAGTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGTGTGTCTAATGGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000476905.6
CDS-3UTR TCA 90 bp ACTGTGAGGCTTCTTTTGCGGCTGCCTCGAGTGCACTATAAGATTGTCCCAATCCCTACTGACCGTGGATaGATGATGGATACCCAAAAG +
Preference number: 4 (lower is better)
Translates to: TVRLLLRLPRVHYKIVPIPTDRG*MMDTQK
Trigger: CTTTTGGGTATCCATCATTCATCCACGGTCAGTAGG...GATTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000476905.6
CDS-3UTR GCA 90 bp ACTGTGAGGCTTCTTTTGCGGCTGCCTCGAGTGCACTATAAGATTGTCCCAATCGGTATCATCATCATATaGAGTAGCGAGCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: TVRLLLRLPRVHYKIVPIGIIII*SSELLL
Trigger: CAGCAGCAGCTCGCTACTGCATATGATGATGATACC...GATTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000476905.6
CDS-3UTR GCA 90 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTTGCGGCTGCCTCGAGTaGACTATAAGATTGTCCCAA +
Preference number: 4 (lower is better)
Translates to: SIHYSNLPVIQVLMPHSICGCLE*TIRLSQ
Trigger: TTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCA...AATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR GCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGGGCTTCTTTTGCGGCTaGCTCGAGTGCACTATAAGA +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVGFFCG*LECTIR
Trigger: TCTTATAGTGCACTCGAGGCAGCCGCAAAAGAAGCC...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGATTCTGAGATTAGGGTaGTTGGGGATCATTCTGGAG +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGILRLG*LGIILE
Trigger: CTCCAGAATGATCCCCAATCACCCTAATCTCAGAAT...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGAATAATACACGCTCTTaGGGAGAGAAAATCCTACAC +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGNNTRS*GEKILH
Trigger: GTGTAGGATTTTCTCTCCTCAAGAGCGTGTATTATT...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGTATGCAGTAGCGAGCTaGTGCTGTAAAAGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVYAVAS*CCKSCC
Trigger: GCAACAGCTTTTACAGCAGCAGCTCGCTACTGCATA...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGTTCATTATCCTTATCTaGATGGACCAAGTCTTTGGG +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGFIILI*MDQVFG
Trigger: CCCAAAGACTTGGTCCATGCAGATAAGGATAATGAA...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGATGCAGGAACGTGTCTaGCAAAAGTCTGAAGTGGAA +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGMQERV*QKSEVE
Trigger: TTCCACTTCAGACTTTTGCCAGACACGTTCCTGCAT...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGGATTGGGGATCATTCTaGAGTTGGAATGTTCAACAA +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGDWGSF*SWNVQQ
Trigger: TTGTTGAACATTCCAACTCCAGAATGATCCCCAATC...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGGTCTATGAACAATTCTaGTTAGCTAAGGTAGGCAGT +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGVYEQF*LAKVGS
Trigger: ACTGCCTACCTTAGCTAACCAGAATTGTTCATAGAC...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGGCTAAGACTTATAAATaGAAGCCTAGCCACGTTACT +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGAKTYK*KPSHVT
Trigger: AGTAACGTGGCTAGGCTTCCATTTATAAGTCTTAGC...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp CTACATGAGAATTTGTGTAGCTCAAGGAGCATCCACTATAGCAACCTTCCTGTGGTCTCCACATTTTCCTaGGCTAGAAGGTTCTTCCGC +
Preference number: 4 (lower is better)
Translates to: LHENLCSSRSIHYSNLPVVSTFS*ARRFFR
Trigger: GCGGAAGAACCTTCTAGCTCAGGAAAATGTGGAGAC...CACAGGAAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR TCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGATTCTGAGATTAGGGTaGTTGGGGATCATTCTGGAG +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVILRLG*LGIILE
Trigger: CTCCAGAATGATCCCCAATCACCCTAATCTCAGAAT...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGCATTACAGTACTTCCTaGGCTCTCAGGAATCCATTA +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGHYSTS*ALRNPL
Trigger: TAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATG...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp CTACATGAGAATTTGTGTAGCTCAAGGAGCATCCACTATAGCAACCTTCCTGTGGGCTTCTTTTGCGGCTaGCTCGAGTGCACTATAAGA +
Preference number: 4 (lower is better)
Translates to: LHENLCSSRSIHYSNLPVGFFCG*LECTIR
Trigger: TCTTATAGTGCACTCGAGGCAGCCGCAAAAGAAGCC...CACAGGAAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGACATTTTCTGAGTTCTaGTGGTCAAAGGTAGTCATA +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGTFSEF*WSKVVI
Trigger: TATGACTACCTTTGACCACCAGAACTCAGAAAATGT...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGATGCAGGAACGTGTCTaGCAAAAGTCTGAAGTGGAA +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVMQERV*QKSEVE
Trigger: TTCCACTTCAGACTTTTGCCAGACACGTTCCTGCAT...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGGATAGTTTTGCTTTCTaGAGACAGACCTGGATCTGT +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVDSFAF*RQTWIC
Trigger: ACAGATCCAGGTCTGTCTTCAGAAAGCAAAACTATC...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342203.8
CDS-3UTR TCA 90 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTGATAGTTTTGCTTTCTaGAGACAGACCTGGATCTGT +
Preference number: 4 (lower is better)
Translates to: SIHYSNLPVIQVLMPHSIDSFAF*RQTWIC
Trigger: ACAGATCCAGGTCTGTCTTCAGAAAGCAAAACTATC...AATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR TCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATGTCTCCACATTTTCCTaGGCTAGAAGGTTCTTCCGC +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDVSTFS*ARRFFR
Trigger: GCGGAAGAACCTTCTAGCTCAGGAAAATGTGGAGAC...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTTTTGATTTGGTCTCCACATTTTCCTaGGCTAGAAGGTTCTTCCGC +
Preference number: 4 (lower is better)
Translates to: YSNLPVIQVLMPHSIFDLVSTFS*ARRFFR
Trigger: GCGGAAGAACCTTCTAGCTCAGGAAAATGTGGAGAC...CAAATCAAAAATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR TCA 90 bp ACTGTGAGGCTTCTTTTGCGGCTGCCTCGAGTGCACTATAAGATTGTCCCAATCTTCCTGAGAAGGCACTaGAAAGTTTCACATTTTCTG +
Preference number: 4 (lower is better)
Translates to: TVRLLLRLPRVHYKIVPIFLRRH*KVSHFL
Trigger: CAGAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAA...GATTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000476905.6
CDS-3UTR GCA 90 bp TACACTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTCTGCGGCTGCCTCGAGTaGACTATAAGATTGTCCCAA +
Preference number: 4 (lower is better)
Translates to: YTVILGHKSFSLNRNRLFCGCLE*TIRLSQ
Trigger: TTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCA...GAAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAGTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR CCA 90 bp TCAAGGAGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTTTCATCTTCATTCCTaGCTTCAGTTTTACCAGTCC +
Preference number: 4 (lower is better)
Translates to: SRSIHYSNLPVIQVLMPHFHLHS*LQFYQS
Trigger: GGACTGGTAAAACTGAAGCCAGGAATGAAGATGAAA...GTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CCA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGCAGATATTACTATACTaGTACCCATCTTGTAAGGAA +
Preference number: 4 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGQILLY*YPSCKE
Trigger: TTCCTTACAAGATGGGTACCAGTATAGTAATATCTG...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGGATTGGGGATCATTCTaGAGTTGGAATGTTCAACAA +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGDWGSF*SWNVQQ
Trigger: TTGTTGAACATTCCAACTCCAGAATGATCCCCAATC...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGTTATCCTTATCTGCATaGACCAAGTCTTTGGGAATG +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGLSLSA*TKSLGM
Trigger: CATTCCCAAAGACTTGGTCCATGCAGATAAGGATAA...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TCAAGGAGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTTGTTCATAACAAGTTaGTGTAGACGTTCCTTCAGT +
Preference number: 4 (lower is better)
Translates to: SRSIHYSNLPVIQVLMPHLFITS*CRRSFS
Trigger: ACTGAAGGAACGTCTACATCAACTTGTTATGAACAA...GTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR TCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGTTCCTGAGAAGGCACTaGAAAGTTTCACATTTTCTG +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVFLRRH*KVSHFL
Trigger: CAGAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAA...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGCATTCTCCTCCAACCTaGTTTGGTTTAATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGHSPPT*FGLISS
Trigger: TGAAGAAATTAAACCAAATCAGGTTGGAGGAGAATG...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTGTGCATGTAAGCGGCTaGACTGCCAGTACAGGGGAA +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSVHVSG*TASTGE
Trigger: TTCCCCTGTACTGGCAGTTCAGCCGCTTACATGCAC...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTGTGCATGTAAGCGGCTaGACTGCCAGTACAGGGGAA +
Preference number: 4 (lower is better)
Translates to: SLTLQYFLSSQESIICKCVHVSG*TASTGE
Trigger: TTCCCCTGTACTGGCAGTTCAGCCGCTTACATGCAC...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGGCTCAAATATATGAATaGGGTGGATCTTTATCAGGA +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGAQIYE*GGSLSG
Trigger: TCCTGATAAAGATCCACCTCATTCATATATTTGAGC...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp TATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTTTTGATTTGTATGCAGTAGCGAGCTaGTGCTGTAAAAGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: YSNLPVIQVLMPHSIFDLYAVAS*CCKSCC
Trigger: GCAACAGCTTTTACAGCAGCAGCTCGCTACTGCATA...CAAATCAAAAATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR GCA 90 bp TACACTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTCTATGCAGTAGCGAGCTaGTGCTGTAAAAGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: YTVILGHKSFSLNRNRLFYAVAS*CCKSCC
Trigger: GCAACAGCTTTTACAGCAGCAGCTCGCTACTGCATA...GAAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAGTGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR GCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGTCTTTCTTCTTCAAATaGCTTTCTCTCCAATCCCAG +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVSFFFK*LSLQSQ
Trigger: CTGGGATTGGAGAGAAAGGCATTTGAAGAAGAAAGA...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGGTCATATTTAGAAACTaGTGCTTTAACCAACTGGCT +
Preference number: 4 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGVIFRN*CFNQLA
Trigger: AGCCAGTTGGTTAAAGCAGCAGTTTCTAAATATGAC...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp ACTGTGAGGCTTCTTTTGCGGCTGCCTCGAGTGCACTATAAGATTGTCCCAATCGTCATATTTAGAAACTaGTGCTTTAACCAACTGGCT +
Preference number: 4 (lower is better)
Translates to: TVRLLLRLPRVHYKIVPIVIFRN*CFNQLA
Trigger: AGCCAGTTGGTTAAAGCAGCAGTTTCTAAATATGAC...GATTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000476905.6
CDS-3UTR GCA 90 bp TTACACTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTTGCGGCTGCCTCGAGTaGACTATAAGATTGTCCCAA +
Preference number: 4 (lower is better)
Translates to: LHCHPWAQIFFTQQEQAFCGCLE*TIRLSQ
Trigger: TTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCA...AAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAGTGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR GCA 90 bp TTTTCTATTCCTCTCTGTCTTACTAGGAATGTTCTACCTGCTTCCTCTTCTTCGGGCTTCTTTTGCGGCTaGCTCGAGTGCACTATAAGA +
Preference number: 4 (lower is better)
Translates to: FSIPLCLTRNVLPASSSSGFFCG*LECTIR
Trigger: TCTTATAGTGCACTCGAGGCAGCCGCAAAAGAAGCC...CGAAGAAGAGGAAGCAGGTAGAACATTCCTAGTAAGACAGAGAGGAATAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR GCA 90 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTAACTATGTTCAGATATaGAGGAACGTGTCTGGCAAA +
Preference number: 4 (lower is better)
Translates to: SIHYSNLPVIQVLMPHSINYVQI*RNVSGK
Trigger: TTTGCCAGACACGTTCCTGCATATCTGAACATAGTT...AATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476905.6
CDS-3UTR GCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGGTACTTTTGTCGTCTTaGCCCTATTCTTCTATCATC +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVVLLSS*PYSSII
Trigger: GATGATAGAAGAATAGGGGCAAGACGACAAAAGTAC...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp CACCAAAATGTAGCAATTAAGAGCAACATATGGGTTTCCCAGGGTGGAGAGCCAACCTATGTTCAGATATaGAGGAACGTGTCTGGCAAA +
Preference number: 4 (lower is better)
Translates to: HQNVAIKSNIWVSQGGEPTYVQI*RNVSGK
Trigger: TTTGCCAGACACGTTCCTGCATATCTGAACATAGGT...TGGCTCTCCACCCTGGGAAACCCATATGTTGCTCTTAATTGCTACATTTTGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000603677.1
CDS-3UTR CCA 90 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTTTTCATCTTCATTCCTaGCTTCAGTTTTACCAGTCC +
Preference number: 4 (lower is better)
Translates to: SIHYSNLPVIQVLMPHSIFHLHS*LQFYQS
Trigger: GGACTGGTAAAACTGAAGCCAGGAATGAAGATGAAA...AATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CCA 90 bp TCAAGGAGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACACATTTTCTGAGTTCTaGTGGTCAAAGGTAGTCATA +
Preference number: 4 (lower is better)
Translates to: SRSIHYSNLPVIQVLMPHTFSEF*WSKVVI
Trigger: TATGACTACCTTTGACCACCAGAACTCAGAAAATGT...GTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGGTTACGTATAGTGAATaGACAACACAAATAGGTGGG +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVVTYSE*TTQIGG
Trigger: CCCACCTATTTGTGTTGTCCATTCACTATACGTAAC...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATAAAACAAATGTGGCCTaGAGCAGACCCATCAGTCCA +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDKTNVA*SRPISP
Trigger: TGGACTGATGGGTCTGCTCCAGGCCACATTTGTTTT...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTAGAAGGTTCTTCCGCTaGAGCACAAGCAGCTCATTC +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIIRRFFR*STSSSF
Trigger: GAATGAGCTGCTTGTGCTTCAGCGGAAGAACCTTCT...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATGGGACCATTCTTCTTTaGGACGTTCCTTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDGTILL*DVPFLP
Trigger: TGGAAGAAAAGGAACGTCTCAAAGAAGAATGGTCCC...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp AAACACCAAAATGTAGCAATTAAGAGCAACATATGGGTTTCCCAGGGTGGAGAGGGGACCATTCTTCTTTaGGACGTTCCTTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: KHQNVAIKSNIWVSQGGEGTILL*DVPFLP
Trigger: TGGAAGAAAAGGAACGTCTCAAAGAAGAATGGTCCC...CTCTCCACCCTGGGAAACCCATATGTTGCTCTTAATTGCTACATTTTGGTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR GCA 90 bp ACAGGAAAACACCAAAATGTAGCAATTAAGAGCAACATATGGGTTTCCCAGGGTGGTATCATCATCATATaGAGTAGCGAGCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: TGKHQNVAIKSNIWVSQGGIIII*SSELLL
Trigger: CAGCAGCAGCTCGCTACTGCATATGATGATGATACC...ACCCTGGGAAACCCATATGTTGCTCTTAATTGCTACATTTTGGTGTTTTCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR GCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGTCGGGGGAAAATTGTTaGCAAATGTATCCATTAACT +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVSGENC*QMYPLT
Trigger: AGTTAATGGATACATTTGGCAACAATTTTCCCCCGA...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp CTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTCTCAGTCTTTCTTCTTCAAATaGCTTTCTCTCCCACCTCCT +
Preference number: 4 (lower is better)
Translates to: LSSLGTNLFHSTGTGFSQSFFFK*LSLPPP
Trigger: AGGAGGTGGGAGAGAAAGGCATTTGAAGAAGAAAGA...CTGAGAAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000603677.1
CDS-3UTR CCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGCTAGGTTTCTTCTTTTaGGGAGAAAGAAGAGAAATC +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVLGFFF*GERREI
Trigger: GATTTCTCTTCTTTCTCCCCAAAAGAAGAAACCTAG...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATATACCTAGCAAGGGTTaGATCTGTGCAGGCTTCTAT +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDIPSKG*ICAGFY
Trigger: ATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCCAGGAGTTTTGTGTGTaGAGTCCTGGGTTTTCCAAC +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSQEFCV*SPGFSN
Trigger: GTTGGAAAACCCAGGACTCCACACACAAAACTCCTG...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp TACACTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTCATTAAGAGCAACATATaGGTTTCCCAGGGTGGAGAG +
Preference number: 4 (lower is better)
Translates to: YTVILGHKSFSLNRNRLFIKSNI*VSQGGE
Trigger: CTCTCCACCCTGGGAAACCCATATGTTGCTCTTAAT...GAAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAGTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR CCA 90 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTAACATAAATCTTCTTTaGGCCTCACTTTCCTCATCT +
Preference number: 4 (lower is better)
Translates to: SIHYSNLPVIQVLMPHSININLL*ASLSSS
Trigger: AGATGAGGAAAGTGAGGCCCAAAGAAGATTTATGTT...AATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476905.6
CDS-3UTR CCA 90 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTGATAGTTTTGCTTTCTaGATCTGTAACAGTCATCCA +
Preference number: 4 (lower is better)
Translates to: SIHYSNLPVIQVLMPHSIDSFAF*ICNSHP
Trigger: TGGATGACTGTTACAGATCCAGAAAGCAAAACTATC...AATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000476905.6
3UTR CAA 72 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTaGATGCCACACTCCATTTTTGATTTGTACATTCTC +
Preference number: 4 (lower is better)
Translates to: SIHYSNLPVIQV*MPHSIFDLYIL
Trigger: GAGAATGTACAAATCAAAAATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR TCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTAGAAGGTTCTTCCGCTaGAGCACAAGCAGCTCATTC +
Preference number: 4 (lower is better)
Translates to: SLTLQYFLSSQESIICKCRRFFR*STSSSF
Trigger: GAATGAGCTGCTTGTGCTTCAGCGGAAGAACCTTCT...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCACATTGAAGGTGCAATaGGTCTGGCTTTTACTCTGC +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSTLKVQ*VWLLLC
Trigger: GCAGAGTAAAAGCCAGACTCATTGCACCTTCAATGT...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTGATCTATGCAGACATTaGAGGTGCAATGAGTCTGGC +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIIDLCRH*RCNESG
Trigger: GCCAGACTCATTGCACCTTCAATGTCTGCATAGATC...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTGAAGAACATAGCACTTaGTGTGAGTATAAACTTGAT +
Preference number: 4 (lower is better)
Translates to: SIHYSNLPVIQVLMPHSIEEHST*CEYKLD
Trigger: ATCAAGTTTATACTCACAGCAAGTGCTATGTTCTTC...AATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR GCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTCCCACATACTCTCTCTaGTTAGTTCCCCGGCATCTT +
Preference number: 4 (lower is better)
Translates to: SLTLQYFLSSQESIICKCPTYSL*LVPRHL
Trigger: AAGATGCCGGGGAACTAAGCAGAGAGAGTATGTGGG...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp CTACATGAGAATTTGTGTAGCTCAAGGAGCATCCACTATAGCAACCTTCCTGTGTCTTTCTTCTTCAAATaGCTTTCTCTCCAATCCCAG +
Preference number: 4 (lower is better)
Translates to: LHENLCSSRSIHYSNLPVSFFFK*LSLQSQ
Trigger: CTGGGATTGGAGAGAAAGGCATTTGAAGAAGAAAGA...CACAGGAAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR GCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTGGCTTCTTTTGCGGCTaGCTCGAGTGCACTATAAGA +
Preference number: 4 (lower is better)
Translates to: SLTLQYFLSSQESIICKCGFFCG*LECTIR
Trigger: TCTTATAGTGCACTCGAGGCAGCCGCAAAAGAAGCC...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATGTGCTCTCTTCATCATaGGCACAAAATGTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDVLSSS*AQNVFS
Trigger: GGAAAACACATTTTGTGCGCATGATGAAGAGAGCAC...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTAGACTAGATTCACGGTaGTCTCTTCATCATGCGCAC +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIIRLDSR*SLHHAH
Trigger: GTGCGCATGATGAAGAGAGCACCGTGAATCTAGTCT...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGAACCATCATCTATCATaGCTAAATGTGAGATTAGCA +
Preference number: 4 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVNHHLS*LNVRLA
Trigger: TGCTAATCTCACATTTAGCCATGATAGATGATGGTT...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp TCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTCTCAGTTCTTTATTAAGAGCAACATATaGGTTTCCCAGGGTGGAGAG +
Preference number: 4 (lower is better)
Translates to: SLGTNLFHSTGTGFSQFFIKSNI*VSQGGE
Trigger: CTCTCCACCCTGGGAAACCCATATGTTGCTCTTAAT...AAAGAACTGAGAAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000603677.1
CDS-3UTR TCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATTTCCTGAGAAGGCACTaGAAAGTTTCACATTTTCTG +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDFLRRH*KVSHFL
Trigger: CAGAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAA...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTACATTGAAGGTGCAATaGGTCTGGCTTTTACTCTGC +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIITLKVQ*VWLLLC
Trigger: GCAGAGTAAAAGCCAGACTCATTGCACCTTCAATGT...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATAATAATACACGCTCTTaGGGAGAGAAAATCCTACAC +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDNNTRS*GEKILH
Trigger: GTGTAGGATTTTCTCTCCTCAAGAGCGTGTATTATT...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTTATGCAGTAGCGAGCTaGTGCTGTAAAAGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: SLTLQYFLSSQESIICKCYAVAS*CCKSCC
Trigger: GCAACAGCTTTTACAGCAGCAGCTCGCTACTGCATA...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATAACTATGTTCAGATATaGAGGAACGTGTCTGGCAAA +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDNYVQI*RNVSGK
Trigger: TTTGCCAGACACGTTCCTGCATATCTGAACATAGTT...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATGTACTTTTGTCGTCTTaGCCCTATTCTTCTATCATC +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDVLLSS*PYSSII
Trigger: GATGATAGAAGAATAGGGGCAAGACGACAAAAGTAC...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTCAAGGGTTGGATCTGTaGAGGCTTCTATGTACAGAG +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSQGLDL*RLLCTE
Trigger: CTCTGTACATAGAAGCCTGCACAGATCCAACCCTTG...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp TCTTTTCTATTCCTCTCTGTCTTACTAGGAATGTTCTACCTGCTTCCTCTTCTTCCCTATGTTCAGATATaGAGGAACGTGTCTGGCAAA +
Preference number: 4 (lower is better)
Translates to: SFLFLSVLLGMFYLLPLLPYVQI*RNVSGK
Trigger: TTTGCCAGACACGTTCCTGCATATCTGAACATAGGG...AAGAAGAGGAAGCAGGTAGAACATTCCTAGTAAGACAGAGAGGAATAGAAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR CCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATTTTCATCTTCATTCCTaGCTTCAGTTTTACCAGTCC +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDFHLHS*LQFYQS
Trigger: GGACTGGTAAAACTGAAGCCAGGAATGAAGATGAAA...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp TCTTTTCTATTCCTCTCTGTCTTACTAGGAATGTTCTACCTGCTTCCTCTTCTTATGCAGGAACGTGTCTaGCAAAAGTCTGAAGTGGAA +
Preference number: 4 (lower is better)
Translates to: SFLFLSVLLGMFYLLPLLMQERV*QKSEVE
Trigger: TTCCACTTCAGACTTTTGCCAGACACGTTCCTGCAT...AAGAAGAGGAAGCAGGTAGAACATTCCTAGTAAGACAGAGAGGAATAGAAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR CCA 90 bp GACACACATCATATGATTTACCTCCAAGAAGACAACAGATCTACCTGTTCACTAATGCAGGAACGTGTCTaGCAAAAGTCTGAAGTGGAA +
Preference number: 4 (lower is better)
Translates to: DTHHMIYLQEDNRSTCSLMQERV*QKSEVE
Trigger: TTCCACTTCAGACTTTTGCCAGACACGTTCCTGCAT...TAGTGAACAGGTAGATCTGTTGTCTTCTTGGAGGTAAATCATATGATGTGTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000603677.1
CDS-3UTR CCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTTGCAAAGTACACCATaGAAAACCCTCGGGGGAAAA +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIILQSTP*KTLGGK
Trigger: TTTTCCCCCGAGGGTTTTCCATGGTGTACTTTGCAA...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCACACCTAGAAAGAGATaGGAAACAAAATCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSTPRKR*ETKSQE
Trigger: CTCCTGGGATTTTGTTTCCCATCTCTTTCTAGGTGT...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATAGGAGGACTTACAAATaGAAGTACACTCTAGAACCA +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDRRTYK*KYTLEP
Trigger: TGGTTCTAGAGTGTACTTCCATTTGTAAGTCCTCCT...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTAAAACAAATGTGGCCTaGAGCAGACCCATCAGTCCA +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSKTNVA*SRPISP
Trigger: TGGACTGATGGGTCTGCTCCAGGCCACATTTGTTTT...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTTTTGATTTGTTGTTCATAACAAGTTaGTGTAGACGTTCCTTCAGT +
Preference number: 4 (lower is better)
Translates to: YSNLPVIQVLMPHSIFDLLFITS*CRRSFS
Trigger: ACTGAAGGAACGTCTACATCAACTTGTTATGAACAA...CAAATCAAAAATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR TCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTGGGACCATTCTTCTTTaGGACGTTCCTTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSGTILL*DVPFLP
Trigger: TGGAAGAAAAGGAACGTCTCAAAGAAGAATGGTCCC...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TTACACTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTTTCCTGAGAAGGCACTaGAAAGTTTCACATTTTCTG +
Preference number: 4 (lower is better)
Translates to: LHCHPWAQIFFTQQEQAFFLRRH*KVSHFL
Trigger: CAGAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAA...AAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAGTGTAA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR TCA 90 bp TATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTTTTGATTTGCATTCTCCTCCAACCTaGTTTGGTTTAATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: YSNLPVIQVLMPHSIFDLHSPPT*FGLISS
Trigger: TGAAGAAATTAAACCAAATCAGGTTGGAGGAGAATG...CAAATCAAAAATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR TCA 90 bp TTTTCTATTCCTCTCTGTCTTACTAGGAATGTTCTACCTGCTTCCTCTTCTTCGTCTTGGAATTGGCACTaGAGCAGAGTATTGATCTTA +
Preference number: 4 (lower is better)
Translates to: FSIPLCLTRNVLPASSSSSWNWH*SRVLIL
Trigger: TAAGATCAATACTCTGCTTCAGTGCCAATTCCAAGA...CGAAGAAGAGGAAGCAGGTAGAACATTCCTAGTAAGACAGAGAGGAATAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR CCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCTTTCATCTTCATTCCTaGCTTCAGTTTTACCAGTCC +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSFHLHS*LQFYQS
Trigger: GGACTGGTAAAACTGAAGCCAGGAATGAAGATGAAA...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATACATTTTCTGAGTTCTaGTGGTCAAAGGTAGTCATA +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDTFSEF*WSKVVI
Trigger: TATGACTACCTTTGACCACCAGAACTCAGAAAATGT...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTATACCTAGCAAGGGTTaGATCTGTGCAGGCTTCTAT +
Preference number: 4 (lower is better)
Translates to: SLTLQYFLSSQESIICKCIPSKG*ICAGFY
Trigger: ATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCAGGAGGACTTACAAATaGAAGTACACTCTAGAACCA +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSRRTYK*KYTLEP
Trigger: TGGTTCTAGAGTGTACTTCCATTTGTAAGTCCTCCT...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCCATATCACCAAGGATTaGAAAGCAGTAGTAAGCCTT +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSHITKD*KAVVSL
Trigger: AAGGCTTACTACTGCTTTCCAATCCTTGGTGATATG...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCCATTCTCCTCCAACCTaGTTTGGTTTAATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSHSPPT*FGLISS
Trigger: TGAAGAAATTAAACCAAATCAGGTTGGAGGAGAATG...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TTTTCTATTCCTCTCTGTCTTACTAGGAATGTTCTACCTGCTTCCTCTTCTTCGCATTCTCCTCCAACCTaGTTTGGTTTAATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: FSIPLCLTRNVLPASSSSHSPPT*FGLISS
Trigger: TGAAGAAATTAAACCAAATCAGGTTGGAGGAGAATG...CGAAGAAGAGGAAGCAGGTAGAACATTCCTAGTAAGACAGAGAGGAATAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR TCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCGCTCAAATATATGAATaGGGTGGATCTTTATCAGGA +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSAQIYE*GGSLSG
Trigger: TCCTGATAAAGATCCACCTCATTCATATATTTGAGC...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TCTTTTCTATTCCTCTCTGTCTTACTAGGAATGTTCTACCTGCTTCCTCTTCTTTCTTGGAATTGGCACTaGAGCAGAGTATTGATCTTA +
Preference number: 4 (lower is better)
Translates to: SFLFLSVLLGMFYLLPLLSWNWH*SRVLIL
Trigger: TAAGATCAATACTCTGCTTCAGTGCCAATTCCAAGA...AAGAAGAGGAAGCAGGTAGAACATTCCTAGTAAGACAGAGAGGAATAGAAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR GCA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATGAAGAACATAGCACTTaGTGTGAGTATAAACTTGAT +
Preference number: 4 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDEEHST*CEYKLD
Trigger: ATCAAGTTTATACTCACAGCAAGTGCTATGTTCTTC...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCGTCATATTTAGAAACTaGTGCTTTAACCAACTGGCT +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSVIFRN*CFNQLA
Trigger: AGCCAGTTGGTTAAAGCAGCAGTTTCTAAATATGAC...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp TTACACTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTGTCATATTTAGAAACTaGTGCTTTAACCAACTGGCT +
Preference number: 4 (lower is better)
Translates to: LHCHPWAQIFFTQQEQAFVIFRN*CFNQLA
Trigger: AGCCAGTTGGTTAAAGCAGCAGTTTCTAAATATGAC...AAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAGTGTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR GCA 90 bp ACAGGAAAACACCAAAATGTAGCAATTAAGAGCAACATATGGGTTTCCCAGGGTGTCATATTTAGAAACTaGTGCTTTAACCAACTGGCT +
Preference number: 4 (lower is better)
Translates to: TGKHQNVAIKSNIWVSQGVIFRN*CFNQLA
Trigger: AGCCAGTTGGTTAAAGCAGCAGTTTCTAAATATGAC...ACCCTGGGAAACCCATATGTTGCTCTTAATTGCTACATTTTGGTGTTTTCCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR GCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTGTGCTCTCTTCATCATaGGCACAAAATGTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: SLTLQYFLSSQESIICKCVLSSS*AQNVFS
Trigger: GGAAAACACATTTTGTGCGCATGATGAAGAGAGCAC...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCGAGAAAATCCTACACTaGTTTGCAGGTCAACATTTT +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSEKILH*FAGQHF
Trigger: AAAATGTTGACCTGCAAAGCAGTGTAGGATTTTCTC...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTGTTACGTATAGTGAATaGACAACACAAATAGGTGGG +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIIVTYSE*TTQIGG
Trigger: CCCACCTATTTGTGTTGTCCATTCACTATACGTAAC...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTACACCTAGAAAGAGATaGGAAACAAAATCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSTPRKR*ETKSQE
Trigger: CTCCTGGGATTTTGTTTCCCATCTCTTTCTAGGTGT...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTTGTAGGTTTAATAGTTaGCCTTCCACTCAGCTCAGA +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSCRFNS*PSTQLR
Trigger: TCTGAGCTGAGTGGAAGGCCAACTATTAAACCTACA...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTGCTAAGACTTATAAATaGAAGCCTAGCCACGTTACT +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIIAKTYK*KPSHVT
Trigger: AGTAACGTGGCTAGGCTTCCATTTATAAGTCTTAGC...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTTATCCTTATCTGCATaGACCAAGTCTTTGGGAATG +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIILSLSA*TKSLGM
Trigger: CATTCCCAAAGACTTGGTCCATGCAGATAAGGATAA...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTTGTTCATAACAAGTTaGTGTAGACGTTCCTTCAGT +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIILFITS*CRRSFS
Trigger: ACTGAAGGAACGTCTACATCAACTTGTTATGAACAA...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp CTAGTGTATTTCCAGCATCTAGCACAGTGTCTATATATACTGGACACTCAATATTTCCTGAGAAGGCACTaGAAAGTTTCACATTTTCTG +
Preference number: 4 (lower is better)
Translates to: LVYFQHLAQCLYILDTQYFLRRH*KVSHFL
Trigger: CAGAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAA...ATATTGAGTGTCCAGTATATATAGACACTGTGCTAGATGCTGGAAATACACTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000603677.1
CDS-3UTR TCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTATCCTGGGAAAGAGCTaGGCCTACATTTATTATTAT +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIIILGKS*AYIYYY
Trigger: ATAATAATAAATGTAGGCTCAGCTCTTTCCCAGGAT...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCGAAGAACATAGCACTTaGTGTGAGTATAAACTTGAT +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSEEHST*CEYKLD
Trigger: ATCAAGTTTATACTCACAGCAAGTGCTATGTTCTTC...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTTCTTTCTTCTTCAAATaGCTTTCTCTCCAATCCCAG +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSSFFFK*LSLQSQ
Trigger: CTGGGATTGGAGAGAAAGGCATTTGAAGAAGAAAGA...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTAACTATGTTCAGATATaGAGGAACGTGTCTGGCAAA +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSNYVQI*RNVSGK
Trigger: TTTGCCAGACACGTTCCTGCATATCTGAACATAGTT...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTCGGGGGAAAATTGTTaGCAAATGTATCCATTAACT +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIISGENC*QMYPLT
Trigger: AGTTAATGGATACATTTGGCAACAATTTTCCCCCGA...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCCAGATATTACTATACTaGTACCCATCTTGTAAGGAA +
Preference number: 4 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSQILLY*YPSCKE
Trigger: TTCCTTACAAGATGGGTACCAGTATAGTAATATCTG...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTCATATCACCAAGGATTaGAAAGCAGTAGTAAGCCTT +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSHITKD*KAVVSL
Trigger: AAGGCTTACTACTGCTTTCCAATCCTTGGTGATATG...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTTTGTTCATAACAAGTTaGTGTAGACGTTCCTTCAGT +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSLFITS*CRRSFS
Trigger: ACTGAAGGAACGTCTACATCAACTTGTTATGAACAA...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR TCA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTGTTATTAGAGATAACTaGCTTTATGACACACCCTGT +
Preference number: 4 (lower is better)
Translates to: SLTLQYFLSSQESIICKCVIRDN*LYDTPC
Trigger: ACAGGGTGTGTCATAAAGTCAGTTATCTCTAATAAC...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp TCTTTTCTATTCCTCTCTGTCTTACTAGGAATGTTCTACCTGCTTCCTCTTCTTGAAGAACATAGCACTTaGTGTGAGTATAAACTTGAT +
Preference number: 4 (lower is better)
Translates to: SFLFLSVLLGMFYLLPLLEEHST*CEYKLD
Trigger: ATCAAGTTTATACTCACAGCAAGTGCTATGTTCTTC...AAGAAGAGGAAGCAGGTAGAACATTCCTAGTAAGACAGAGAGGAATAGAAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR GCA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTATCATAGACTGCAGATaGAAACATTTAATGGTGAAC +
Preference number: 4 (lower is better)
Translates to: LHMSLTLQYFLSSQESIIIIDCR*KHLMVN
Trigger: GTTCACCATTAAATGTTTGCATCTGCAGTCTATGAT...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR GCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTGAGAAAATCCTACACTaGTTTGCAGGTCAACATTTT +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSEKILH*FAGQHF
Trigger: AAAATGTTGACCTGCAAAGCAGTGTAGGATTTTCTC...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CCA 90 bp ACTAGTGTATTTCCAGCATCTAGCACAGTGTCTATATATACTGGACACTCAATAACATTTTCTGAGTTCTaGTGGTCAAAGGTAGTCATA +
Preference number: 4 (lower is better)
Translates to: TSVFPASSTVSIYTGHSITFSEF*WSKVVI
Trigger: TATGACTACCTTTGACCACCAGAACTCAGAAAATGT...TATTGAGTGTCCAGTATATATAGACACTGTGCTAGATGCTGGAAATACACTAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000603677.1
CDS-3UTR CCA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTAACCATCATCTATCATaGCTAAATGTGAGATTAGCA +
Preference number: 4 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSNHHLS*LNVRLA
Trigger: TGCTAATCTCACATTTAGCCATGATAGATGATGGTT...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS GCA 90 bp ACCTCCTCCTCCAGGAGCGGCCCGGGTCGACGCTCGCCCGCACCCTaGAACGGCCCCAACAGCCGCGCGGAGCCTCCCGCCGAACAACGG +
Preference number: 5 (lower is better)
Translates to: TSSSRSGPGRRSPAP*NGPNSRAEPPAEQR
Trigger: CCGTTGTTCGGCGGGAGGCTCCGCGCGGCTGTTGGGGCCGTTGCAGGGTGCGGGCGAGCGTCGACCCGGGCCGCTCCTGGAGGAGGAGGT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000437941.6
ENST00000481102.5
ENST00000603677.1
CDS-3UTR CAA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGACTGTGAGGCTTCTTTaGCGGCTGCCTCGAGTGCAC +
Preference number: 5 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVTVRLL*RLPRVH
Trigger: GTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTACTGTGAGGCTTCTTTaGCGGCTGCCTCGAGTGCAC +
Preference number: 5 (lower is better)
Translates to: SIHYSNLPVIQVLMPHSITVRLL*RLPRVH
Trigger: GTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT...AATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS CCA 90 bp CAAAACCCTGTCTCTACACGAAATACAAACATCAGCTGGGCATGGTaGCACAGGACTACAGTCTCAGCTACTTTGGAGGCTGAGGAGGGA +
Preference number: 5 (lower is better)
Translates to: QNPVSTRNTNISWAW*HRTTVSATLEAEEG
Trigger: TCCCTCCTCAGCCTCCAAAGTAGCTGAGACTGTAGTCCTGTGCCACCATGCCCAGCTGATGTTTGTATTTCGTGTAGAGACAGGGTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490476.1
CDS-3UTR CAA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGCCTGTGATCCAGGTCTaGATGCCACACTCCATTTTT +
Preference number: 5 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGPVIQV*MPHSIF
Trigger: AAAAATGGAGTGTGGCATCAAGACCTGGATCACAGG...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp CTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTCTCAGACTGTGAGGCTTCTTTaGCGGCTGCCTCGAGTGCAC +
Preference number: 5 (lower is better)
Translates to: LSSLGTNLFHSTGTGFSQTVRLL*RLPRVH
Trigger: GTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT...CTGAGAAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000603677.1
CDS-3UTR CAA 90 bp TATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTTTTGATTTGACTGTGAGGCTTCTTTaGCGGCTGCCTCGAGTGCAC +
Preference number: 5 (lower is better)
Translates to: YSNLPVIQVLMPHSIFDLTVRLL*RLPRVH
Trigger: GTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT...CAAATCAAAAATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CAA 90 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTCCTGTGATCCAGGTCTaGATGCCACACTCCATTTTT +
Preference number: 5 (lower is better)
Translates to: SIHYSNLPVIQVLMPHSIPVIQV*MPHSIF
Trigger: AAAAATGGAGTGTGGCATCAAGACCTGGATCACAGG...AATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CAA 90 bp CTGCAAAAACCTCTCTCCTGGAGTCCCAAGGGCTTTCAAATGTTCCACCAGGGGTTTCTACATGAGAATTaGTGTAGCTCAAGGAGCATC +
Preference number: 5 (lower is better)
Translates to: LQKPLSWSPKGFQMFHQGFLHEN*CSSRSI
Trigger: GATGCTCCTTGAGCTACACAAATTCTCATGTAGAAA...CCCCTGGTGGAACATTTGAAAGCCCTTGGGACTCCAGGAGAGAGGTTTTTGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp AGACCCATTAGACACACTGTGAGGCTTCTTTTGCGGCTGCCTCGAGTGCACTATACAGCAAATATAGTCTaGGTTGCACTGTCTTCTGAC +
Preference number: 5 (lower is better)
Translates to: RPIRHTVRLLLRLPRVHYTANIV*VALSSD
Trigger: GTCAGAAGACAGTGCAACCAAGACTATATTTGCTGT...ATAGTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGTGTGTCTAATGGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000476905.6
CDS-3UTR CAA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTACTGTGAGGCTTCTTTaGCGGCTGCCTCGAGTGCAC +
Preference number: 5 (lower is better)
Translates to: LHMSLTLQYFLSSQESIITVRLL*RLPRVH
Trigger: GTGCACTCGAGGCAGCCGCAAAAGAAGCCTCACAGT...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGTGCCACACTCCATTTTaGATTTGTACATTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGCHTPF*ICTFSS
Trigger: GGAGGAGAATGTACAAATCAAAAATGGAGTGTGGCA...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp ATACCTAGCAAGGGTTGGATCTGTGCAGGCTTCTATGTACAGAGACAAGCAGGGTCATATCACCAAGGATaGGAAAGCAGTAGTAAGCCT +
Preference number: 5 (lower is better)
Translates to: IPSKGWICAGFYVQRQAGSYHQG*ESSSKP
Trigger: AGGCTTACTACTGCTTTCCAATCCTTGGTGATATGA...CCCTGCTTGTCTCTGTACATAGAAGCCTGCACAGATCCAACCCTTGCTAGGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp AGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTTGCCACACTCCATTTTaGATTTGTACATTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: SIHYSNLPVIQVLMPHSICHTPF*ICTFSS
Trigger: GGAGGAGAATGTACAAATCAAAAATGGAGTGTGGCA...AATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CAA 90 bp TCAAGGAGCATCCACTATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTTTCTACATGAGAATTaGTGTAGCTCAAGGAGCATC +
Preference number: 5 (lower is better)
Translates to: SRSIHYSNLPVIQVLMPHFLHEN*CSSRSI
Trigger: GATGCTCCTTGAGCTACACAAATTCTCATGTAGAAA...GTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CAA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGGGTACTTTTGTCGTCTaGCCCCTATTCTTCTATCAT +
Preference number: 5 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVGTFVV*PLFFYH
Trigger: ATGATAGAAGAATAGGGGCAAGACGACAAAAGTACC...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS TCA 90 bp TGGTTGCACTGTCTTCTGACACCACACCTACTGACCGTGGATGAATaGTGGATACCCAAAAGAGATTTCTTGTGTAAAACACTTAGCAGG +
Preference number: 5 (lower is better)
Translates to: WLHCLLTPHLLTVDE*WIPKRDFLCKTLSR
Trigger: CCTGCTAAGTGTTTTACACAAGAAATCTCTTTTGGGTATCCATCATTCATCCACGGTCAGTAGGTGTGGTGTCAGAAGACAGTGCAACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000459708.1
ENST00000476905.6
CDS-3UTR CAA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATCCTGTGATCCAGGTCTaGATGCCACACTCCATTTTT +
Preference number: 5 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDPVIQV*MPHSIF
Trigger: AAAAATGGAGTGTGGCATCAAGACCTGGATCACAGG...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp AAACACCAAAATGTAGCAATTAAGAGCAACATATGGGTTTCCCAGGGTGGAGAGCCTGTGATCCAGGTCTaGATGCCACACTCCATTTTT +
Preference number: 5 (lower is better)
Translates to: KHQNVAIKSNIWVSQGGEPVIQV*MPHSIF
Trigger: AAAAATGGAGTGTGGCATCAAGACCTGGATCACAGG...CTCTCCACCCTGGGAAACCCATATGTTGCTCTTAATTGCTACATTTTGGTGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR CAA 90 bp GTGGAGTCCTGGGTTTTCCAACAGACATCATTCCAGCATTCTGAGATTAGGGTGTTTCTACATGAGAATTaGTGTAGCTCAAGGAGCATC +
Preference number: 5 (lower is better)
Translates to: VESWVFQQTSFQHSEIRVFLHEN*CSSRSI
Trigger: GATGCTCCTTGAGCTACACAAATTCTCATGTAGAAA...CACCCTAATCTCAGAATGCTGGAATGATGTCTGTTGGAAAACCCAGGACTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp CTACATGAGAATTTGTGTAGCTCAAGGAGCATCCACTATAGCAACCTTCCTGTGCTTCCAGGTGTACCTTaGAAACTTGGTTATCAAGCT +
Preference number: 5 (lower is better)
Translates to: LHENLCSSRSIHYSNLPVLPGVP*KLGYQA
Trigger: AGCTTGATAACCAAGTTTCAAAGGTACACCTGGAAG...CACAGGAAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CAA 90 bp CTACATGAGAATTTGTGTAGCTCAAGGAGCATCCACTATAGCAACCTTCCTGTGTGCCACACTCCATTTTaGATTTGTACATTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: LHENLCSSRSIHYSNLPVCHTPF*ICTFSS
Trigger: GGAGGAGAATGTACAAATCAAAAATGGAGTGTGGCA...CACAGGAAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CAA 90 bp CACCAAAATGTAGCAATTAAGAGCAACATATGGGTTTCCCAGGGTGGAGAGCCATTTACACTGTCATCCTaGGGCACAAATCTTTTTCAC +
Preference number: 5 (lower is better)
Translates to: HQNVAIKSNIWVSQGGEPFTLSS*GTNLFH
Trigger: GTGAAAAAGATTTGTGCCCAAGGATGACAGTGTAAA...TGGCTCTCCACCCTGGGAAACCCATATGTTGCTCTTAATTGCTACATTTTGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR CAA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCAGGGACCATTCTTCTTaGAGACGTTCCTTTTCTTCC +
Preference number: 5 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSRDHSS*RRSFSS
Trigger: GGAAGAAAAGGAACGTCTCAAAGAAGAATGGTCCCT...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATCTCGGGGGAAAATTGTaGCCAAATGTATCCATTAAC +
Preference number: 5 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDLGGKL*PNVSIN
Trigger: GTTAATGGATACATTTGGCAACAATTTTCCCCCGAG...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp TATAGCAACCTTCCTGTGATCCAGGTCTTGATGCCACACTCCATTTTTGATTTGGCTTTTCTCAGTTCTTaGCCCTATGTTCAGATATGC +
Preference number: 5 (lower is better)
Translates to: YSNLPVIQVLMPHSIFDLAFLSS*PYVQIC
Trigger: GCATATCTGAACATAGGGCAAAGAACTGAGAAAAGC...CAAATCAAAAATGGAGTGTGGCATCAAGACCTGGATCACAGGAAGGTTGCTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR CAA 90 bp TACACTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTCTTTCTACATGAGAATTaGTGTAGCTCAAGGAGCATC +
Preference number: 5 (lower is better)
Translates to: YTVILGHKSFSLNRNRLFFLHEN*CSSRSI
Trigger: GATGCTCCTTGAGCTACACAAATTCTCATGTAGAAA...GAAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAGTGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR CAA 90 bp TGCAGGCTTCTATGTACAGAGACAAGCAGGGTTAGGCACTTAAAGCTTTTTGATTATTCAAAGGTACTTTaGTCGTCTTGCCCCTATTCT +
Preference number: 5 (lower is better)
Translates to: CRLLCTETSRVRHLKLFDYSKVL*SSCPYS
Trigger: AGAATAGGGGCAAGACGACAAAAGTACCTTTGAATA...ATCAAAAAGCTTTAAGTGCCTAACCCTGCTTGTCTCTGTACATAGAAGCCTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCAATCACAGCAGGGTCTaGCTAACTCACAAATTTAGC +
Preference number: 5 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSNHSRV*LTHKFS
Trigger: GCTAAATTTGTGAGTTAGCAAGACCCTGCTGTGATT...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp GTCCGTAGCATCCACCATTGTTTATTACAATGTAGGTTTAATAGTTGGCCTTCCTCATATCACCAAGGATaGGAAAGCAGTAGTAAGCCT +
Preference number: 5 (lower is better)
Translates to: VRSIHHCLLQCRFNSWPSSYHQG*ESSSKP
Trigger: AGGCTTACTACTGCTTTCCAATCCTTGGTGATATGA...GGAAGGCCAACTATTAAACCTACATTGTAATAAACAATGGTGGATGCTACGGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp CTACATGAGAATTTGTGTAGCTCAAGGAGCATCCACTATAGCAACCTTCCTGTGAAACTAATCTTGGAATaGGCACTGAAGCAGAGTATT +
Preference number: 5 (lower is better)
Translates to: LHENLCSSRSIHYSNLPVKLILE*ALKQSI
Trigger: AATACTCTGCTTCAGTGCCAATTCCAAGATTAGTTT...CACAGGAAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000481102.5
CDS-3UTR CAA 90 bp CTTTTTCTACATGAGAATTTGTGTAGCTCAAGGAGCATCCACTATAGCAACCTTCTTCCAGGTGTACCTTaGAAACTTGGTTATCAAGCT +
Preference number: 5 (lower is better)
Translates to: LFLHENLCSSRSIHYSNLLPGVP*KLGYQA
Trigger: AGCTTGATAACCAAGTTTCAAAGGTACACCTGGAAG...AAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAGAAAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000476905.6
ENST00000481102.5
CDS-3UTR CAA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTAGGGACCATTCTTCTTaGAGACGTTCCTTTTCTTCC +
Preference number: 5 (lower is better)
Translates to: SLTLQYFLSSQESIICKCRDHSS*RRSFSS
Trigger: GGAAGAAAAGGAACGTCTCAAAGAAGAATGGTCCCT...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp TTACACTGTCATCCTTGGGCACAAATCTTTTTCACTCAACAGGAACAGGCTTTTTTTACACTGTCATCCTaGGGCACAAATCTTTTTCAC +
Preference number: 5 (lower is better)
Translates to: LHCHPWAQIFFTQQEQAFFTLSS*GTNLFH
Trigger: GTGAAAAAGATTTGTGCCCAAGGATGACAGTGTAAA...AAAAGCCTGTTCCTGTTGAGTGAAAAAGATTTGTGCCCAAGGATGACAGTGTAA
40% GC, longest homopolymer 7 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000481102.5
ENST00000603677.1
CDS-3UTR CAA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTCTTCCAGGTGTACCTTaGAAACTTGGTTATCAAGCT +
Preference number: 5 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSLPGVP*KLGYQA
Trigger: AGCTTGATAACCAAGTTTCAAAGGTACACCTGGAAG...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTTGCCACACTCCATTTTaGATTTGTACATTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSCHTPF*ICTFSS
Trigger: GGAGGAGAATGTACAAATCAAAAATGGAGTGTGGCA...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp CTTCATATGTCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTCTCAGTCTAGTGCTTTaGTTTCCATCCAAACATCTA +
Preference number: 5 (lower is better)
Translates to: LHMSLTLQYFLSSQESIILSLVL*FPSKHL
Trigger: TAGATGTTTGGATGGAAACAAAAGCACTAGACTGAG...AATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGACATATGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTGGTACTTTTGTCGTCTaGCCCCTATTCTTCTATCAT +
Preference number: 5 (lower is better)
Translates to: SLTLQYFLSSQESIICKCGTFVV*PLFFYH
Trigger: ATGATAGAAGAATAGGGGCAAGACGACAAAAGTACC...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTGGGATCATTCTGGAGTaGGAATGTTCAACAAAAGTG +
Preference number: 5 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSGIILE*ECSTKV
Trigger: CACTTTTGTTGAACATTCCAACTCCAGAATGATCCC...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTGGGATCATTCTGGAGTaGGAATGTTCAACAAAAGTG +
Preference number: 5 (lower is better)
Translates to: SLTLQYFLSSQESIICKCGIILE*ECSTKV
Trigger: CACTTTTGTTGAACATTCCAACTCCAGAATGATCCC...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTAATCACAGCAGGGTCTaGCTAACTCACAAATTTAGC +
Preference number: 5 (lower is better)
Translates to: SLTLQYFLSSQESIICKCNHSRV*LTHKFS
Trigger: GCTAAATTTGTGAGTTAGCAAGACCCTGCTGTGATT...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTGCATGGACCAAGTCTTaGGGAATGCTTTTTCTACTA +
Preference number: 5 (lower is better)
Translates to: SLTLQYFLSSQESIICKCAWTKS*GMLFLL
Trigger: TAGTAGAAAAAGCATTCCCAAAGACTTGGTCCATGC...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp AGTGATAAACAAGAAAGCACTTATCAGGAGGACTTACAAATGGAAGTACACTCTGCATGGACCAAGTCTTaGGGAATGCTTTTTCTACTA +
Preference number: 5 (lower is better)
Translates to: SDKQESTYQEDLQMEVHSAWTKS*GMLFLL
Trigger: TAGTAGAAAAAGCATTCCCAAAGACTTGGTCCATGC...AGAGTGTACTTCCATTTGTAAGTCCTCCTGATAAGTGCTTTCTTGTTTATCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTCTCAGTCTAGTGCTTTaGTTTCCATCCAAACATCTA +
Preference number: 5 (lower is better)
Translates to: SLTLQYFLSSQESIICKCLSLVL*FPSKHL
Trigger: TAGATGTTTGGATGGAAACAAAAGCACTAGACTGAG...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp TCACTGACATTACAGTACTTCCTGAGCTCTCAGGAATCCATTATTTGTAAATGTTATTCAAAGGTACTTTaGTCGTCTTGCCCCTATTCT +
Preference number: 5 (lower is better)
Translates to: SLTLQYFLSSQESIICKCYSKVL*SSCPYS
Trigger: AGAATAGGGGCAAGACGACAAAAGTACCTTTGAATA...ACATTTACAAATAATGGATTCCTGAGAGCTCAGGAAGTACTGTAATGTCAGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342203.8
ENST00000437941.6
CDS-3UTR CAA 90 bp GACACACATCATATGATTTACCTCCAAGAAGACAACAGATCTACCTGTTCACTACCAAAATCTCTATTGTaGCTAATACTACAGACATGC +
Preference number: 5 (lower is better)
Translates to: DTHHMIYLQEDNRSTCSLPKSLL*LILQTC
Trigger: GCATGTCTGTAGTATTAGCAACAATAGAGATTTTGG...TAGTGAACAGGTAGATCTGTTGTCTTCTTGGAGGTAAATCATATGATGTGTGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000603677.1
CDS-3UTR CAA 90 bp CAGATCTACCTGTTCACTAGTGTATTTCCAGCATCTAGCACAGTGTCTATATATGCTTTTCTCAGTTCTTaGCCCTTCAACAACAATAAA +
Preference number: 5 (lower is better)
Translates to: QIYLFTSVFPASSTVSIYAFLSS*PFNNNK
Trigger: TTTATTGTTGTTGAAGGGCAAAGAACTGAGAAAAGC...ATATATAGACACTGTGCTAGATGCTGGAAATACACTAGTGAACAGGTAGATCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000603677.1
CDS GCA 72 bp GAAAAAGAAGACCTTATCCCTGCGGTCCGCGCGCGCTaGGGGCGCAGCTGCGGCTGCGGCACCTGTTACGCC +
Preference number: 6 (lower is better)
Translates to: EKEDLIPAVRAR*GRSCGCGTCYA
Trigger: GGCGTAACAGGTGCCGCAGCCGCAGCTGCGCCCGCAGCGCGCGCGGACCGCAGGGATAAGGTCTTCTTTTTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000422026.1
CDS TCA 72 bp ATGGAGCAAGGCACTTGGGTTTCTGCATCCATAAAGTaGTGGCTGGACTCTCAGTGGAGGAGCCCCTGGGAC +
Preference number: 6 (lower is better)
Translates to: MEQGTWVSASIK*WLDSQWRSPWD
Trigger: GTCCCAGGGGCTCCTCCACTGAGAGTCCAGCCATCACTTTATGGATGCAGAAACCCAAGTGCCTTGCTCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000460500.1
CDS TCA 72 bp GAGGACGGGGCTCTTTTAGTCTCTGCTATAAATCTGTaGCATGGAGCAAGGCACTTGGGTTTCTGCATCCAT +
Preference number: 6 (lower is better)
Translates to: EDGALLVSAINL*HGARHLGFCIH
Trigger: ATGGATGCAGAAACCCAAGTGCCTTGCTCCATGTCACAGATTTATAGCAGAGACTAAAAGAGCCCCGTCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000460500.1
CDS TCA 72 bp TGTCTTCTGACACCACACCTACTGACCGTGGATGAATaGTGGATACCCAAAAGAGATTTCTTGTGTAAAACA +
Preference number: 6 (lower is better)
Translates to: CLLTPHLLTVDE*WIPKRDFLCKT
Trigger: TGTTTTACACAAGAAATCTCTTTTGGGTATCCATCATTCATCCACGGTCAGTAGGTGTGGTGTCAGAAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000459708.1
ENST00000476905.6
CDS TCA 72 bp TTGCTATCTCTAGATGAGATAATCACCAAGGTTCTCTaGAAATCTAAGTCTCAGGGGCACTACATAAACAAC +
Preference number: 6 (lower is better)
Translates to: LLSLDEIITKVL*KSKSQGHYINN
Trigger: GTTGTTTATGTAGTGCCCCTGAGACTTAGATTTTCAGAGAACCTTGGTGATTATCTCATCTAGAGATAGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000460500.1
CDS GCA 72 bp TATTTCAACATCCACACAGTTGCCATTTCACATGATTaGTCTAGCTATCTTTGTTTGCTCTCTGGCTATCTA +
Preference number: 6 (lower is better)
Translates to: YFNIHTVAISHD*SSYLCLLSGYL
Trigger: TAGATAGCCAGAGAGCAAACAAAGATAGCTAGAGCAATCATGTGAAATGGCAACTGTGTGGATGTTGAAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490476.1
CDS CCA 72 bp TCTGATTACATTTATCAATTTAAACTGGACTTTACCTaGCTTCAGTTTTACCAGTCCTCCAGGAGCCTCTTT +
Preference number: 6 (lower is better)
Translates to: SDYIYQFKLDFT*LQFYQSSRSLF
Trigger: AAAGAGGCTCCTGGAGGACTGGTAAAACTGAAGCCAGGTAAAGTCCAGTTTAAATTGATAAATGTAATCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000460500.1
CDS CAA 72 bp GTTGCCATTTCACATGATTGCTCTAGCTATCTTTGTTaGCTCTCTGGCTATCTATTCGTACTTCTTATGTCA +
Preference number: 6 (lower is better)
Translates to: VAISHDCSSYLC*LSGYLFVLLMS
Trigger: TGACATAAGAAGTACGAATAGATAGCCAGAGAGCAAACAAAGATAGCTAGAGCAATCATGTGAAATGGCAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490476.1
CDS CAA 90 bp ATCCACACAGTTGCCATTTCACATGATTGCTCTAGCTATCTTTGTTaGCTCTCTGGCTATCTATTCGTACTTCTTATGTCAAATGAGTTA +
Preference number: 6 (lower is better)
Translates to: IHTVAISHDCSSYLC*LSGYLFVLLMSNEL
Trigger: TAACTCATTTGACATAAGAAGTACGAATAGATAGCCAGAGAGCAAACAAAGATAGCTAGAGCAATCATGTGAAATGGCAACTGTGTGGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490476.1