Pregenerated sensors for SSX1 (Homo sapiens)
Ensembl gene IDs: ENSG00000126752Ensembl transcript IDs: ENST00000376919.4
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TACTGGTACTTGGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTAAATGCGCTTATACTGGTACTTaGTGTGTGTGTGTGCGTGTG | + |
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Preference number: 4 (lower is better) Translates to: YWYLVCVCACVCVCVCKCAYTGT*CVCVRV Trigger: CACACGCACACACACACACCAAGTACCAGTATAAGC...GCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000376919.4 |
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| CDS-3UTR CCA 90 bp | TACTGGTACTTGGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTAAATGCAATATTTGCTTTTCCTaGGGGGTGCAGTTGTTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: YWYLVCVCACVCVCVCKCNICFS*GVQLFP Trigger: GGGAAACAACTGCACCCCCCAGGAAAAGCAAATATT...GCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000376919.4 |
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| CDS-3UTR GCA 90 bp | TACTGGTACTTGGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTAAATGCTATCATCAAAGGCCTTaGTTCTCTTCTCTGATGCTT | + |
|
Preference number: 4 (lower is better) Translates to: YWYLVCVCACVCVCVCKCYHQRP*FSSLML Trigger: AAGCATCAGAGAAGAGAAGCAAGGCCTTTGATGATA...GCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000376919.4 |
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| CDS-3UTR GCA 90 bp | TACTGGTACTTGGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTAAATGCGTGTGTGTGTGTAAATaGAGAGGAAAAAGTCTGAAA | + |
|
Preference number: 4 (lower is better) Translates to: YWYLVCVCACVCVCVCKCVCVCK*RGKSLK Trigger: TTTCAGACTTTTTCCTCTGCATTTACACACACACAC...GCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000376919.4 |
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| CDS-3UTR CAA 90 bp | TACTGGTACTTGGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTAAATGCGCATGTTTCCCCCTTTaGGGTCCAGATCTCTTATTA | + |
|
Preference number: 5 (lower is better) Translates to: YWYLVCVCACVCVCVCKCACFPL*GPDLLL Trigger: TAATAAGAGATCTGGACCCAAAAGGGGGAAACATGC...GCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000376919.4 |
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| CDS-3UTR CAA 90 bp | TACTGGTACTTGGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTAAATGCATATCATCAAAGGCCTaGCTTCTCTTCTCTGATGCT | + |
|
Preference number: 5 (lower is better) Translates to: YWYLVCVCACVCVCVCKCISSKA*LLFSDA Trigger: AGCATCAGAGAAGAGAAGCAAGGCCTTTGATGATAT...GCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000376919.4 |
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