Pregenerated sensors for SSBP4 (Homo sapiens)
Ensembl gene IDs: ENSG00000130511Ensembl transcript IDs: ENST00000597724.6, ENST00000599699.2, ENST00000601614.6, ENST00000625926.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATCCCCCTTGGCGTACATaGTGCTCCACGCCGCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHPPWRT*CSTPPP Trigger: CGGCGGCGGCGTGGAGCAGCATGTACGCCAAGGGGG...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS-3UTR GCA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATGGGGCTGGGGGCGGCTaGAGCACTATAGTCCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHGAGGG*STIVLE Trigger: TTCCAGGACTATAGTGCTGCAGCCGCCCCCAGCCCC...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS-3UTR GCA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATAGCCGCCATGGAGCCTaGGGCCATTGTGTCACCTGG | + |
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Preference number: 4 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHSRHGA*GHCVTW Trigger: CCAGGTGACACAATGGCCGCAGGCTCCATGGCGGCT...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS-3UTR GCA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATGTGCCTTTTGCGCAGTaGACACACCCGGCCCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHVPFAQ*THPAPV Trigger: GACAGGGGCCGGGTGTGTGCACTGCGCAAAAGGCAC...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS-3UTR CCA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATCGTACAGCGCCAACCTaGTCCTCATGGGCACTGCCC | + |
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Preference number: 4 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHRTAPT*SSWALP Trigger: GGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACG...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS-3UTR TCA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATGGAAGCGCGGTGACATaGAGGGCTGGAAGAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHGSAVT*RAGRSQ Trigger: CTGGCTTCTTCCAGCCCTTCATGTCACCGCGCTTCC...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS-3UTR CCA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATGGTGACATGAAGGGCTaGAAGAAGCCAGCCGCCATG | + |
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Preference number: 4 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHGDMKG*KKPAAM Trigger: CATGGCGGCTGGCTTCTTCCAGCCCTTCATGTCACC...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS-3UTR TCA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATTGGAGGCCATGTTCTTaGGGGGAGAGACAGAGACAG | + |
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Preference number: 4 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHWRPCS*GERQRQ Trigger: CTGTCTCTGTCTCTCCCCTCAAGAACATGGCCTCCA...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS-3UTR TCA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATTTCCTCCAGCATCCATaGAGTGCCTTTTGCGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHFLQHP*SAFCAV Trigger: CACTGCGCAAAAGGCACTTCATGGATGCTGGAGGAA...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS-3UTR GCA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATCCAGCATCCATGAAGTaGCTTTTGCGCAGTGCACAC | + |
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Preference number: 4 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHPASMK*LLRSAH Trigger: GTGTGCACTGCGCAAAAGGCACTTCATGGATGCTGG...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS GCA 90 bp | GCCCGAGCCTACAGACACGGACAGACACGGGCACCGGCTCAGACGTaGTGGCGCCATGCCCCTCGGCCTCCAGGGGCCAACGACCCTCGC | + |
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Preference number: 5 (lower is better) Translates to: ARAYRHGQTRAPAQT*WRHAPRPPGANDPR Trigger: GCGAGGGTCGTTGGCCCCTGGAGGCCGAGGGGCATGGCGCCAGCACGTCTGAGCCGGTGCCCGTGTCTGTCCGTGTCTGTAGGCTCGGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000599699.2 |
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| CDS CCA 90 bp | CGAGCCTACAGACACGGACAGACACGGGCACCGGCTCAGACGTGCTaGCGCCATGCCCCTCGGCCTCCAGGGGCCAACGACCCTCGCAAG | + |
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Preference number: 5 (lower is better) Translates to: RAYRHGQTRAPAQTC*RHAPRPPGANDPRK Trigger: CTTGCGAGGGTCGTTGGCCCCTGGAGGCCGAGGGGCATGGCGCCAGCACGTCTGAGCCGGTGCCCGTGTCTGTCCGTGTCTGTAGGCTCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000599699.2 |
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| CDS TCA 90 bp | TTGCGCAGTGCACACACCCGGCCCCTGTCCTGGAGGCCATGTTCTTaGGGGGAGAGACAGAGACAGGCAATACTTCTCGCGGGCCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: LRSAHTRPLSWRPCS*GERQRQAILLAGLA Trigger: AGCCAGGCCCGCGAGAAGTATTGCCTGTCTCTGTCTCTCCCCTCAAGAACATGGCCTCCAGGACAGGGGCCGGGTGTGTGCACTGCGCAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000601614.6 ENST00000625926.1 |
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| CDS CCA 90 bp | ACATTGGGTGTCTCACCCCGCAGAGCTACCCACACTCAGCAAGGGTaGGAACCACCGCACATACAGCCCGCCCAGCGACACACATACACT | + |
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Preference number: 5 (lower is better) Translates to: TLGVSPRRATHTQQG*EPPHIQPAQRHTYT Trigger: AGTGTATGTGTGTCGCTGGGCGGGCTGTATGTGCGGTGGTTCCCACCCTTGCTGAGTGTGGGTAGCTCTGCGGGGTGAGACACCCAATGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000597724.6 |
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| CDS-3UTR CAA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATTCCATGAAGTGCCTTTaGCGCAGTGCACACACCCGG | + |
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Preference number: 5 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHSMKCL*RSAHTR Trigger: CCGGGTGTGTGCACTGCGCAAAAGGCACTTCATGGA...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS-3UTR CAA 90 bp | AACGTACAGCGCCAACCTGGTCCTCATGGGCACTGCCCTTGCCCCAAATCTCATTCATGGGCACTGCCCTaGCCCCAAATCTCATCCTGC | + |
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Preference number: 5 (lower is better) Translates to: NVQRQPGPHGHCPCPKSHSWALP*PQISSC Trigger: GCAGGATGAGATTTGGGGCAAGGGCAGTGCCCATGA...ATGAGATTTGGGGCAAGGGCAGTGCCCATGAGGACCAGGTTGGCGCTGTACGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS GCA 90 bp | CTTCGTTCATTCACTTCTTCATTAGTTCCTCCAGCATCCATGAAGTaGCTTTTGCGCAGTGCACACACCCGGCCCCTGTCCTGGAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: LRSFTSSLVPPASMK*LLRSAHTRPLSWRP Trigger: TGGCCTCCAGGACAGGGGCCGGGTGTGTGCACTGCGCAAAAGGCACTTCATGGATGCTGGAGGAACTAATGAAGAAGTGAATGAACGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS CCA 72 bp | AGACACGGACAGACACGGGCACCGGCTCAGACGTGCTaGCGCCATGCCCCTCGGCCTCCAGGGGCCAACGAC | + |
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Preference number: 6 (lower is better) Translates to: RHGQTRAPAQTC*RHAPRPPGAND Trigger: GTCGTTGGCCCCTGGAGGCCGAGGGGCATGGCGCCAGCACGTCTGAGCCGGTGCCCGTGTCTGTCCGTGTCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000599699.2 |
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| CDS CCA 72 bp | GTCTCACCCCGCAGAGCTACCCACACTCAGCAAGGGTaGGAACCACCGCACATACAGCCCGCCCAGCGACAC | + |
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Preference number: 6 (lower is better) Translates to: VSPRRATHTQQG*EPPHIQPAQRH Trigger: GTGTCGCTGGGCGGGCTGTATGTGCGGTGGTTCCCACCCTTGCTGAGTGTGGGTAGCTCTGCGGGGTGAGAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000597724.6 |
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| CDS GCA 72 bp | AGTTCCTCCAGCATCCATGAAGTGCCTTTTGCGCAGTaGACACACCCGGCCCCTGTCCTGGAGGCCATGTTC | + |
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Preference number: 6 (lower is better) Translates to: SSSSIHEVPFAQ*THPAPVLEAMF Trigger: GAACATGGCCTCCAGGACAGGGGCCGGGTGTGTGCACTGCGCAAAAGGCACTTCATGGATGCTGGAGGAACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000601614.6 ENST00000625926.1 |
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| CDS CAA 72 bp | AGCGCCAACCTCAAATGGAGCCGGCCACCCACATTGTaGTACACCCAGCCACACACATTCGCAGCGACACTC | + |
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Preference number: 6 (lower is better) Translates to: SANLKWSRPPTL*YTQPHTFAATL Trigger: GAGTGTCGCTGCGAATGTGTGTGGCTGGGTGTACAACAATGTGGGTGGCCGGCTCCATTTGAGGTTGGCGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000597724.6 |
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| CDS CAA 72 bp | TACAGCGCCAACCTCAAATGGAGCCGGCCACCCACATaGTTGTACACCCAGCCACACACATTCGCAGCGACA | + |
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Preference number: 6 (lower is better) Translates to: YSANLKWSRPPT*LYTQPHTFAAT Trigger: TGTCGCTGCGAATGTGTGTGGCTGGGTGTACAACAATGTGGGTGGCCGGCTCCATTTGAGGTTGGCGCTGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000597724.6 |
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| CDS GCA 72 bp | TTCACTTCTTCATTAGTTCCTCCAGCATCCATGAAGTaGCTTTTGCGCAGTGCACACACCCGGCCCCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: FTSSLVPPASMK*LLRSAHTRPLS Trigger: GGACAGGGGCCGGGTGTGTGCACTGCGCAAAAGGCACTTCATGGATGCTGGAGGAACTAATGAAGAAGTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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| CDS CAA 90 bp | TCATTCACTTCTTCATTAGTTCCTCCAGCATCCATGAAGTGCCTTTaGCGCAGTGCACACACCCGGCCCCTGTCCTGGAGGCCATGTTCT | + |
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Preference number: 6 (lower is better) Translates to: SFTSSLVPPASMKCL*RSAHTRPLSWRPCS Trigger: AGAACATGGCCTCCAGGACAGGGGCCGGGTGTGTGCACTGCGCAAAAGGCACTTCATGGATGCTGGAGGAACTAATGAAGAAGTGAATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000601614.6 |
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