Pregenerated sensors for SSBP1 (Homo sapiens)
Ensembl gene IDs: ENSG00000106028Ensembl transcript IDs: ENST00000461433.1, ENST00000463093.5, ENST00000465582.5, ENST00000468267.1, ENST00000481508.1, ENST00000489378.5, ENST00000496622.1, ENST00000498107.5, ENST00000570953.1, ENST00000571430.5, ENST00000571462.1, ENST00000571709.5, ENST00000575352.5, ENST00000576520.1, ENST00000576834.2, ENST00000612337.4
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TCTCTGCTGAATCAGGAGGTGCCCTGCTTCAGTGCTGATGAACACGTACTGCTGGGGCAGCCGCCAACATaGCTGGGGAGGGGAGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: SLLNQEVPCFSADEHVLLGQPPT*LGRGGS Trigger: AGACCCTCCCCTCCCCAGCCATGTTGGCGGCTGCCC...CAGCAGTACGTGTTCATCAGCACTGAAGCAGGGCACCTCCTGATTCAGCAGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR TCA 90 bp | TCTCTGCTGAATCAGGAGGTGCCCTGCTTCAGTGCTGATGAACACGTACTGCTGGGAGGGTCTCTCTGCTaGATCAGGAGGTGCCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: SLLNQEVPCFSADEHVLLGGSLC*IRRCPA Trigger: AGCAGGGCACCTCCTGATTCAGCAGAGAGACCCTCC...CAGCAGTACGTGTTCATCAGCACTGAAGCAGGGCACCTCCTGATTCAGCAGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR CCA 90 bp | ACACGTACTGCTGCTGGCTGTGTCAGAATCCCAAATGATGGCCAAAGAAGAATCAGCCGCCAACATGGCTaGGGAGGGGAGGGTCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: TRTAAGCVRIPNDGQRRISRQHG*GGEGLS Trigger: AGAGAGACCCTCCCCTCCCCAGCCATGTTGGCGGCT...GATTCTTCTTTGGCCATCATTTGGGATTCTGACACAGCCAGCAGCAGTACGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR CCA 90 bp | TCTCTGCTGAATCAGGAGGTGCCCTGCTTCAGTGCTGATGAACACGTACTGCTGATTCAGCCCCTGCAATaGGCATCAGCAATCCTAGGG | + |
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Preference number: 4 (lower is better) Translates to: SLLNQEVPCFSADEHVLLIQPLQ*ASAILG Trigger: CCCTAGGATTGCTGATGCCCATTGCAGGGGCTGAAT...CAGCAGTACGTGTTCATCAGCACTGAAGCAGGGCACCTCCTGATTCAGCAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR TCA 90 bp | ACACGTACTGCTGCTGGCTGTGTCAGAATCCCAAATGATGGCCAAAGAAGAATCGATATGCCACGTCTCTaGGGCCTGGCCGGAATACTG | + |
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Preference number: 4 (lower is better) Translates to: TRTAAGCVRIPNDGQRRIDMPRL*GLAGIL Trigger: CAGTATTCCGGCCAGGCCTCAGAGACGTGGCATATC...GATTCTTCTTTGGCCATCATTTGGGATTCTGACACAGCCAGCAGCAGTACGTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR GCA 90 bp | TCTCTGCTGAATCAGGAGGTGCCCTGCTTCAGTGCTGATGAACACGTACTGCTGATGAACACGTACTGCTaGTGGCTGTGTCAGAATCCC | + |
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Preference number: 4 (lower is better) Translates to: SLLNQEVPCFSADEHVLLMNTYC*WLCQNP Trigger: GGGATTCTGACACAGCCAGCAGCAGTACGTGTTCAT...CAGCAGTACGTGTTCATCAGCACTGAAGCAGGGCACCTCCTGATTCAGCAGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR GCA 90 bp | TCTCTGCTGAATCAGGAGGTGCCCTGCTTCAGTGCTGATGAACACGTACTGCTGAATCAGGAGGTGCCCTaGTTCAGTGCTGATGAACAC | + |
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Preference number: 4 (lower is better) Translates to: SLLNQEVPCFSADEHVLLNQEVP*FSADEH Trigger: GTGTTCATCAGCACTGAAGCAGGGCACCTCCTGATT...CAGCAGTACGTGTTCATCAGCACTGAAGCAGGGCACCTCCTGATTCAGCAGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR GCA 90 bp | TCTCTGCTGAATCAGGAGGTGCCCTGCTTCAGTGCTGATGAACACGTACTGCTGCTGATGAACACGTACTaGTGCTGGCTGTGTCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: SLLNQEVPCFSADEHVLLLMNTY*CWLCQN Trigger: ATTCTGACACAGCCAGCAGCAGTACGTGTTCATCAG...CAGCAGTACGTGTTCATCAGCACTGAAGCAGGGCACCTCCTGATTCAGCAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR TCA 90 bp | ACACGTACTGCTGCTGGCTGTGTCAGAATCCCAAATGATGGCCAAAGAAGAATCTTCCAACCAGGCCAATaGGAAATTCAGCCCCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: TRTAAGCVRIPNDGQRRIFQPGQ*EIQPLQ Trigger: TTGCAGGGGCTGAATTTCTCATTGGCCTGGTTGGAA...GATTCTTCTTTGGCCATCATTTGGGATTCTGACACAGCCAGCAGCAGTACGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR GCA 90 bp | ACACGTACTGCTGCTGGCTGTGTCAGAATCCCAAATGATGGCCAAAGAAGAATCGAGAAATTCAGCCCCTaGAATGGGCATCAGCAATCC | + |
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Preference number: 4 (lower is better) Translates to: TRTAAGCVRIPNDGQRRIEKFSP*NGHQQS Trigger: GGATTGCTGATGCCCATTGCAGGGGCTGAATTTCTC...GATTCTTCTTTGGCCATCATTTGGGATTCTGACACAGCCAGCAGCAGTACGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR TCA 90 bp | ACACGTACTGCTGCTGGCTGTGTCAGAATCCCAAATGATGGCCAAAGAAGAATCTGCCATGTTGTCTTTTaGCTGACATCACCCAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: TRTAAGCVRIPNDGQRRICHVVF*LTSPSW Trigger: CCAACTGGGTGATGTCAGTCAAAAGACAACATGGCA...GATTCTTCTTTGGCCATCATTTGGGATTCTGACACAGCCAGCAGCAGTACGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR CCA 90 bp | ACACGTACTGCTGCTGGCTGTGTCAGAATCCCAAATGATGGCCAAAGAAGAATCAACACGTACTGCTGCTaGCTGTGTCAGAATCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: TRTAAGCVRIPNDGQRRINTYCC*LCQNPK Trigger: TTTGGGATTCTGACACAGCCAGCAGCAGTACGTGTT...GATTCTTCTTTGGCCATCATTTGGGATTCTGACACAGCCAGCAGCAGTACGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR TCA 90 bp | ACACGTACTGCTGCTGGCTGTGTCAGAATCCCAAATGATGGCCAAAGAAGAATCAACTTCACTATCCCCTaGTCGCCACATCTCATTAGT | + |
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Preference number: 4 (lower is better) Translates to: TRTAAGCVRIPNDGQRRINFTIP*SPHLIS Trigger: ACTAATGAGATGTGGCGATCAGGGGATAGTGAAGTT...GATTCTTCTTTGGCCATCATTTGGGATTCTGACACAGCCAGCAGCAGTACGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR TCA 90 bp | ACACGTACTGCTGCTGGCTGTGTCAGAATCCCAAATGATGGCCAAAGAAGAATCATGTTGTCTTTTGACTaGCATCACCCAGTTGGTAAA | + |
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Preference number: 4 (lower is better) Translates to: TRTAAGCVRIPNDGQRRIMLSFD*HHPVGK Trigger: TTTACCAACTGGGTGATGTCAGTCAAAAGACAACAT...GATTCTTCTTTGGCCATCATTTGGGATTCTGACACAGCCAGCAGCAGTACGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS-3UTR TCA 90 bp | ACACGTACTGCTGCTGGCTGTGTCAGAATCCCAAATGATGGCCAAAGAAGAATCTGTCAGAATCCCAAATaGTGGCCAAAGAAGAATCAT | + |
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Preference number: 4 (lower is better) Translates to: TRTAAGCVRIPNDGQRRICQNPK*WPKKNH Trigger: ATGATTCTTCTTTGGCCATCATTTGGGATTCTGACA...GATTCTTCTTTGGCCATCATTTGGGATTCTGACACAGCCAGCAGCAGTACGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000465582.5 |
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| CDS TCA 90 bp | GACTCCAGCACTTCCTTCGCGCTGGCTATCCCTTCCTCCCTCACCTaGCGATCTAACCCGAGCAGCCCAGCCACGCAGGGGATCACTTCC | + |
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Preference number: 5 (lower is better) Translates to: DSSTSFALAIPSSLT*RSNPSSPATQGITS Trigger: GGAAGTGATCCCCTGCGTGGCTGGGCTGCTCGGGTTAGATCGTCAGGTGAGGGAGGAAGGGATAGCCAGCGCGAAGGAAGTGCTGGAGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000498107.5 ENST00000571430.5 ENST00000612337.4 |
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| CDS CCA 90 bp | GATCACGCGCAGCCAAAACACACGACTCCAGCACTTCCTTCGCGCTaGCTATCCCTTCCTCCCTCACCTGACGATCTAACCCGAGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: DHAQPKHTTPALPSR*LSLPPSPDDLTRAA Trigger: GGCTGCTCGGGTTAGATCGTCAGGTGAGGGAGGAAGGGATAGCCAGCGCGAAGGAAGTGCTGGAGTCGTGTGTTTTGGCTGCGCGTGATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000498107.5 ENST00000571430.5 ENST00000612337.4 |
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| CDS CCA 90 bp | GAGGAGAGTCCCCAACCTCCAGGGCTGAGGACTAGTAGAGTTCTGTaGCCTGTTAGGAACCTGGCTGCACAGCAGGAGGTGAGCAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: EESPQPPGLRTSRVL*PVRNLAAQQEVSSK Trigger: CTTGCTGCTCACCTCCTGCTGTGCAGCCAGGTTCCTAACAGGCCACAGAACTCTACTAGTCCTCAGCCCTGGAGGTTGGGGACTCTCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000496622.1 ENST00000571462.1 |
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| CDS CCA 90 bp | AGGCTTTTCCGAAGATGGCGCCACCACCTGAAAACCGAGGAGAACTaGAAGGAAATCACGCGGTCCTCCGCACGACTGATGAAAGGGCCA | + |
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Preference number: 5 (lower is better) Translates to: RLFRRWRHHLKTEEN*KEITRSSARLMKGP Trigger: TGGCCCTTTCATCAGTCGTGCGGAGGACCGCGTGATTTCCTTCCAGTTCTCCTCGGTTTTCAGGTGGTGGCGCCATCTTCGGAAAAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000463093.5 ENST00000571709.5 ENST00000612337.4 |
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| CDS TCA 90 bp | AGACTGCATCACCTGCCCAAGCTCCTGCAGGAAGTATGTGGCAAGTaGTCTCAAGGACCCAGGGCCCTTGACACCAATGCTACTGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: RLHHLPKLLQEVCGK*SQGPRALDTNATAF Trigger: GAAAGCAGTAGCATTGGTGTCAAGGGCCCTGGGTCCTTGAGATCACTTGCCACATACTTCCTGCAGGAGCTTGGGCAGGTGATGCAGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000461433.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 |
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| CDS GCA 90 bp | GTAAAATTATTCCCATTTAGGGCTGAGAAAACACCTCAGAGAGACTaGATCACCTGCCCAAGCTCCTGCAGGAAGTATGTGGCAAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: VKLFPFRAEKTPQRD*ITCPSSCRKYVASD Trigger: ATCACTTGCCACATACTTCCTGCAGGAGCTTGGGCAGGTGATGCAGTCTCTCTGAGGTGTTTTCTCAGCCCTAAATGGGAATAATTTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000461433.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 |
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| CDS TCA 90 bp | GAAGGCATTTTCTACATAGTGAAATCTCTGGTGACCACTGAGACTTaGGATGCTCTCTTCAGTGTGGAAAGATGGGGGAAGAGGAACGTT | + |
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Preference number: 5 (lower is better) Translates to: EGIFYIVKSLVTTET*DALFSVERWGKRNV Trigger: AACGTTCCTCTTCCCCCATCTTTCCACACTGAAGAGAGCATCTCAAGTCTCAGTGGTCACCAGAGATTTCACTATGTAGAAAATGCCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000461433.1 ENST00000468267.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 ENST00000576520.1 |
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| CDS TCA 90 bp | GGAATGAGAAGGCATTTTCTACATAGTGAAATCTCTGGTGACCACTaGGACTTGAGATGCTCTCTTCAGTGTGGAAAGATGGGGGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: GMRRHFLHSEISGDH*DLRCSLQCGKMGEE Trigger: CTCTTCCCCCATCTTTCCACACTGAAGAGAGCATCTCAAGTCTCAGTGGTCACCAGAGATTTCACTATGTAGAAAATGCCTTCTCATTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000461433.1 ENST00000468267.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 ENST00000576520.1 |
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| CDS CCA 90 bp | GCAGAAGTCCACCAATCAAATAAACACCAATCCCCAGGGTGCTGTTaGCTATCTAATCCTATCACTAAACTTAGGAGCAGAGGGCAGATA | + |
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Preference number: 5 (lower is better) Translates to: AEVHQSNKHQSPGCC*LSNPITKLRSRGQI Trigger: TATCTGCCCTCTGCTCCTAAGTTTAGTGATAGGATTAGATAGCCAACAGCACCCTGGGGATTGGTGTTTATTTGATTGGTGGACTTCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000461433.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 |
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| CDS CCA 90 bp | ATATTCCAAAGTCAGATTCCCTGTGTCTATGAAACTGCCTTCCCCTaGTTGCTCCTTCAGACCTTAAAAGGAATTAGGATACCTAATATG | + |
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Preference number: 5 (lower is better) Translates to: IFQSQIPCVYETAFP*LLLQTLKGIRIPNM Trigger: CATATTAGGTATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCAGGGGAAGGCAGTTTCATAGACACAGGGAATCTGACTTTGGAATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000496622.1 ENST00000571462.1 |
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| CDS CCA 90 bp | CACACTCACATTAGTGTAATTCTTATCTTGGCATACGCTTCTTCCTaGTTAGGGCTAGATCCTTCCAAAAGACAATACATTCAGAGTTTT | + |
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Preference number: 5 (lower is better) Translates to: HTHISVILILAYASS*LGLDPSKRQYIQSF Trigger: AAAACTCTGAATGTATTGTCTTTTGGAAGGATCTAGCCCTAACCAGGAAGAAGCGTATGCCAAGATAAGAATTACACTAATGTGAGTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489378.5 ENST00000575352.5 |
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| CDS TCA 90 bp | AATTCAGAGCTCAGAGAGCTAGCCATTCTATCAGAGAAACATTTTTaGAGTGGCAGTACTGTTAATATAAAAAGCAGAAGTCCACCAATC | + |
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Preference number: 5 (lower is better) Translates to: NSELRELAILSEKHF*SGSTVNIKSRSPPI Trigger: GATTGGTGGACTTCTGCTTTTTATATTAACAGTACTGCCACTTCAAAAATGTTTCTCTGATAGAATGGCTAGCTCTCTGAGCTCTGAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENST00000461433.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 |
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| CDS GCA 90 bp | CTGCTAATGAGAACCTGTGTCATGATTCTGGAAATGTCATTTGAGTaGTCAGACAAGCTAGACCTCATAAATCTTACACAGAGATTTATA | + |
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Preference number: 5 (lower is better) Translates to: LLMRTCVMILEMSFE*SDKLDLINLTQRFI Trigger: TATAAATCTCTGTGTAAGATTTATGAGGTCTAGCTTGTCTGAGCACTCAAATGACATTTCCAGAATCATGACACAGGTTCTCATTAGCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000461433.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 |
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| CDS TCA 72 bp | ACTTCCTTCGCGCTGGCTATCCCTTCCTCCCTCACCTaGCGATCTAACCCGAGCAGCCCAGCCACGCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: TSFALAIPSSLT*RSNPSSPATQG Trigger: CCCCTGCGTGGCTGGGCTGCTCGGGTTAGATCGTCAGGTGAGGGAGGAAGGGATAGCCAGCGCGAAGGAAGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000498107.5 ENST00000571430.5 ENST00000612337.4 |
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| CDS CCA 72 bp | CCCCAACCTCCAGGGCTGAGGACTAGTAGAGTTCTGTaGCCTGTTAGGAACCTGGCTGCACAGCAGGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: PQPPGLRTSRVL*PVRNLAAQQEV Trigger: CACCTCCTGCTGTGCAGCCAGGTTCCTAACAGGCCACAGAACTCTACTAGTCCTCAGCCCTGGAGGTTGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000496622.1 ENST00000571462.1 |
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| CDS CCA 72 bp | CGAAGATGGCGCCACCACCTGAAAACCGAGGAGAACTaGAAGGAAATCACGCGGTCCTCCGCACGACTGATG | + |
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Preference number: 6 (lower is better) Translates to: RRWRHHLKTEEN*KEITRSSARLM Trigger: CATCAGTCGTGCGGAGGACCGCGTGATTTCCTTCCAGTTCTCCTCGGTTTTCAGGTGGTGGCGCCATCTTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000463093.5 ENST00000571709.5 ENST00000612337.4 |
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| CDS TCA 72 bp | CACCTGCCCAAGCTCCTGCAGGAAGTATGTGGCAAGTaGTCTCAAGGACCCAGGGCCCTTGACACCAATGCT | + |
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Preference number: 6 (lower is better) Translates to: HLPKLLQEVCGK*SQGPRALDTNA Trigger: AGCATTGGTGTCAAGGGCCCTGGGTCCTTGAGATCACTTGCCACATACTTCCTGCAGGAGCTTGGGCAGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000461433.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 |
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| CDS TCA 72 bp | TGTGGCCTGTTAGGAACCTGGCTGCACAGCAGGAGGTaGGCAGCAAGCAGCGAGCAAGCATTACTGACCAAG | + |
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Preference number: 6 (lower is better) Translates to: CGLLGTWLHSRR*AASSEQALLTK Trigger: CTTGGTCAGTAATGCTTGCTCGCTGCTTGCTGCTCACCTCCTGCTGTGCAGCCAGGTTCCTAACAGGCCACA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000496622.1 ENST00000571462.1 |
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| CDS GCA 72 bp | TTCCCATTTAGGGCTGAGAAAACACCTCAGAGAGACTaGATCACCTGCCCAAGCTCCTGCAGGAAGTATGTG | + |
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Preference number: 6 (lower is better) Translates to: FPFRAEKTPQRD*ITCPSSCRKYV Trigger: CACATACTTCCTGCAGGAGCTTGGGCAGGTGATGCAGTCTCTCTGAGGTGTTTTCTCAGCCCTAAATGGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000461433.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 |
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| CDS CAA 72 bp | CAGATTCCCTGTGTCTATGAAACTGCCTTCCCCTGGTaGCTCCTTCAGACCTTAAAAGGAATTAGGATACCT | + |
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Preference number: 6 (lower is better) Translates to: QIPCVYETAFPW*LLQTLKGIRIP Trigger: AGGTATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCAGGGGAAGGCAGTTTCATAGACACAGGGAATCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000496622.1 ENST00000571462.1 |
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| CDS CCA 72 bp | AGTCAGATTCCCTGTGTCTATGAAACTGCCTTCCCCTaGTTGCTCCTTCAGACCTTAAAAGGAATTAGGATA | + |
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Preference number: 6 (lower is better) Translates to: SQIPCVYETAFP*LLLQTLKGIRI Trigger: TATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCAGGGGAAGGCAGTTTCATAGACACAGGGAATCTGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000496622.1 ENST00000571462.1 |
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| CDS CAA 90 bp | GGATTCCTTCCTCCCTCCCAAATAAACTCACACCTGTATGTCTTTTaGGTCCCAAATAACTTCCTCTTCCTCCAACCCATCGACAAAATT | + |
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Preference number: 6 (lower is better) Translates to: GFLPPSQINSHLYVF*VPNNFLFLQPIDKI Trigger: AATTTTGTCGATGGGTTGGAGGAAGAGGAAGTTATTTGGGACCAAAAAGACATACAGGTGTGAGTTTATTTGGGAGGGAGGAAGGAATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000481508.1 ENST00000576834.2 |
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| CDS TCA 72 bp | AGGCATTTTCTACATAGTGAAATCTCTGGTGACCACTaGGACTTGAGATGCTCTCTTCAGTGTGGAAAGATG | + |
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Preference number: 6 (lower is better) Translates to: RHFLHSEISGDH*DLRCSLQCGKM Trigger: CATCTTTCCACACTGAAGAGAGCATCTCAAGTCTCAGTGGTCACCAGAGATTTCACTATGTAGAAAATGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000461433.1 ENST00000468267.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 ENST00000576520.1 |
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| CDS GCA 72 bp | GAAGTCCACCAATCAAATAAACACCAATCCCCAGGGTaGTGTTGGCTATCTAATCCTATCACTAAACTTAGG | + |
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Preference number: 6 (lower is better) Translates to: EVHQSNKHQSPG*CWLSNPITKLR Trigger: CCTAAGTTTAGTGATAGGATTAGATAGCCAACAGCACCCTGGGGATTGGTGTTTATTTGATTGGTGGACTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000461433.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 |
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| CDS CCA 72 bp | CACCAATCAAATAAACACCAATCCCCAGGGTGCTGTTaGCTATCTAATCCTATCACTAAACTTAGGAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: HQSNKHQSPGCC*LSNPITKLRSR Trigger: TCTGCTCCTAAGTTTAGTGATAGGATTAGATAGCCAACAGCACCCTGGGGATTGGTGTTTATTTGATTGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000461433.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 |
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| CDS CAA 90 bp | TTCCAAAGTCAGATTCCCTGTGTCTATGAAACTGCCTTCCCCTGGTaGCTCCTTCAGACCTTAAAAGGAATTAGGATACCTAATATGACT | + |
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Preference number: 6 (lower is better) Translates to: FQSQIPCVYETAFPW*LLQTLKGIRIPNMT Trigger: AGTCATATTAGGTATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCAGGGGAAGGCAGTTTCATAGACACAGGGAATCTGACTTTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000496622.1 ENST00000571462.1 |
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| CDS CCA 72 bp | ATTAGTGTAATTCTTATCTTGGCATACGCTTCTTCCTaGTTAGGGCTAGATCCTTCCAAAAGACAATACATT | + |
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Preference number: 6 (lower is better) Translates to: ISVILILAYASS*LGLDPSKRQYI Trigger: AATGTATTGTCTTTTGGAAGGATCTAGCCCTAACCAGGAAGAAGCGTATGCCAAGATAAGAATTACACTAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489378.5 ENST00000575352.5 |
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| CDS TCA 72 bp | CTCAGAGAGCTAGCCATTCTATCAGAGAAACATTTTTaGAGTGGCAGTACTGTTAATATAAAAAGCAGAAGT | + |
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Preference number: 6 (lower is better) Translates to: LRELAILSEKHF*SGSTVNIKSRS Trigger: ACTTCTGCTTTTTATATTAACAGTACTGCCACTTCAAAAATGTTTCTCTGATAGAATGGCTAGCTCTCTGAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENST00000461433.1 ENST00000496622.1 ENST00000570953.1 ENST00000571462.1 |
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