Pregenerated sensors for SSB (Homo sapiens)
Ensembl gene IDs: ENSG00000138385Ensembl transcript IDs: ENST00000409333.1, ENST00000422006.5, ENST00000490914.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GACCAAAAGAGTGACGCTGGTGTACATCTGCGGCCCAAAGTTCTTTaGCCTCCAGTCAGTCCCATAGGCTCCACAGAACCCTCCGGCGTT | + |
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Preference number: 5 (lower is better) Translates to: DQKSDAGVHLRPKVL*PPVSPIGSTEPSGV Trigger: AACGCCGGAGGGTTCTGTGGAGCCTATGGGACTGACTGGAGGCCAAAGAACTTTGGGCCGCAGATGTACACCAGCGTCACTCTTTTGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409333.1 |
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| CDS TCA 90 bp | CTGAAACCTGATGTGAGCGATGAAGGCCCTAACAGACCAAAAGAGTaGCGCTGGTGTACATCTGCGGCCCAAAGTTCTTTGGCCTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: LKPDVSDEGPNRPKE*RWCTSAAQSSLASS Trigger: ACTGGAGGCCAAAGAACTTTGGGCCGCAGATGTACACCAGCGTCACTCTTTTGGTCTGTTAGGGCCTTCATCGCTCACATCAGGTTTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409333.1 |
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| CDS CCA 72 bp | AGTGACGCTGGTGTACATCTGCGGCCCAAAGTTCTTTaGCCTCCAGTCAGTCCCATAGGCTCCACAGAACCC | + |
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Preference number: 6 (lower is better) Translates to: SDAGVHLRPKVL*PPVSPIGSTEP Trigger: GGGTTCTGTGGAGCCTATGGGACTGACTGGAGGCCAAAGAACTTTGGGCCGCAGATGTACACCAGCGTCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000409333.1 |
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| CDS CAA 72 bp | TGCGCGCGCACGCGCGCGCGCAAGATGAATATCAGATaGCCTAAAAGCCAGAAATCTAGGGTCTCCCTGAAT | + |
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Preference number: 6 (lower is better) Translates to: CARTRARKMNIR*PKSQKSRVSLN Trigger: ATTCAGGGAGACCCTAGATTTCTGGCTTTTAGGCAATCTGATATTCATCTTGCGCGCGCGCGTGCGCGCGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422006.5 |
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| CDS CAA 90 bp | GTGTGTGTGTGCGCGCGCACGCGCGCGCGCAAGATGAATATCAGATaGCCTAAAAGCCAGAAATCTAGGGTCTCCCTGAATTTTGGGAAT | + |
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Preference number: 6 (lower is better) Translates to: VCVCARTRARKMNIR*PKSQKSRVSLNFGN Trigger: ATTCCCAAAATTCAGGGAGACCCTAGATTTCTGGCTTTTAGGCAATCTGATATTCATCTTGCGCGCGCGCGTGCGCGCGCACACACACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422006.5 |
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| CDS TCA 72 bp | GATGTGAGCGATGAAGGCCCTAACAGACCAAAAGAGTaGCGCTGGTGTACATCTGCGGCCCAAAGTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: DVSDEGPNRPKE*RWCTSAAQSSL Trigger: CAAAGAACTTTGGGCCGCAGATGTACACCAGCGTCACTCTTTTGGTCTGTTAGGGCCTTCATCGCTCACATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000409333.1 |
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| CDS TCA 72 bp | GATCGTCCAATGCTAGACTGCAATGCAATTTGGCCCTaGGATTGTCAAGGCAGCTTAAGATCTCAGTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: DRPMLDCNAIWP*DCQGSLRSQCF Trigger: GAAACACTGAGATCTTAAGCTGCCTTGACAATCTCAGGGCCAAATTGCATTGCAGTCTAGCATTGGACGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490914.1 |
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| CDS CAA 90 bp | AAGATGCTGTTAGATCTGGTGTCTCATGATGACCTGCTTCCTGGTTaGCAGATGGCCATCTTCTTCATGTATCCTTACATGGTGAAAAGC | + |
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Preference number: 6 (lower is better) Translates to: KMLLDLVSHDDLLPG*QMAIFFMYPYMVKS Trigger: GCTTTTCACCATGTAAGGATACATGAAGAAGATGGCCATCTGCAAACCAGGAAGCAGGTCATCATGAGACACCAGATCTAACAGCATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422006.5 |
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| CDS CAA 72 bp | TTAGATCTGGTGTCTCATGATGACCTGCTTCCTGGTTaGCAGATGGCCATCTTCTTCATGTATCCTTACATG | + |
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Preference number: 6 (lower is better) Translates to: LDLVSHDDLLPG*QMAIFFMYPYM Trigger: CATGTAAGGATACATGAAGAAGATGGCCATCTGCAAACCAGGAAGCAGGTCATCATGAGACACCAGATCTAA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422006.5 |
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| CDS TCA 72 bp | CAACTAAATCAAAACTCCAGGCCAAGAGTACCACTCTaGAGGCTGCTAGGCTTGCTAAGTTTTTCTATTTCT | + |
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Preference number: 6 (lower is better) Translates to: QLNQNSRPRVPL*RLLGLLSFSIS Trigger: AGAAATAGAAAAACTTAGCAAGCCTAGCAGCCTTCAGAGTGGTACTCTTGGCCTGGAGTTTTGATTTAGTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000422006.5 |
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| CDS GCA 72 bp | GATCTCAGTGTTTCACTAGCAAAGAGAAAGGTCTACTaGCACTATTTCAGAGCTCACCAGCTATATTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: DLSVSLAKRKVY*HYFRAHQLYFC Trigger: ACAGAAATATAGCTGGTGAGCTCTGAAATAGTGGCAGTAGACCTTTCTCTTTGCTAGTGAAACACTGAGATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490914.1 |
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| CDS CAA 72 bp | GGTGTCTTAAACAACAGAAATTTATTGCTCGCAGTTTaGAAGGCTGAGAAGTCCAAGATCAAGATGCTGTTA | + |
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Preference number: 6 (lower is better) Translates to: GVLNNRNLLLAV*KAEKSKIKMLL Trigger: TAACAGCATCTTGATCTTGGACTTCTCAGCCTTCAAAACTGCGAGCAATAAATTTCTGTTGTTTAAGACACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422006.5 |
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| CDS CAA 90 bp | ATAACAAAATATCATAGACTGGGTGTCTTAAACAACAGAAATTTATaGCTCGCAGTTTTGAAGGCTGAGAAGTCCAAGATCAAGATGCTG | + |
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Preference number: 6 (lower is better) Translates to: ITKYHRLGVLNNRNL*LAVLKAEKSKIKML Trigger: CAGCATCTTGATCTTGGACTTCTCAGCCTTCAAAACTGCGAGCAATAAATTTCTGTTGTTTAAGACACCCAGTCTATGATATTTTGTTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422006.5 |
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