Pregenerated sensors for SRRM1 (Homo sapiens)
Ensembl gene IDs: ENSG00000133226Ensembl transcript IDs: ENST00000374389.8, ENST00000461768.5, ENST00000462710.5, ENST00000466910.5, ENST00000479034.5, ENST00000485541.1, ENST00000490543.5, ENST00000596378.1, ENST00000600523.5
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTAGATTCCAGGTGTCTTCAGTTTCTTCTTGGAACCTTGGGGGTTTaGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTCCCTTGGCTTG | + |
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Preference number: 1 (lower is better) Translates to: LDSRCLQFLLGTLGV*NRQVPCRERCSLGL Trigger: CAAGCCAAGGGAACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGACACCTGGAATCTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR CCA 90 bp | GTTATATCATTTATCTCCAAACACACACTGCATCATCAAGGGAGTTaGGTCAGAGCGACATTGGGACACTCACTCTGCTGTGACCTAATA | + |
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Preference number: 1 (lower is better) Translates to: VISFISKHTLHHQGS*VRATLGHSLCCDLI Trigger: TATTAGGTCACAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGTGTGTGTTTGGAGATAAATGATATAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR GCA 90 bp | CCCTGTAGAGAAAGATGTTCCCTTGGCTTGCTTCCGACTCCCTACTaGAACTCAACCACCTTGAGTTTAATGTTATATCATTTATCTCCA | + |
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Preference number: 1 (lower is better) Translates to: PCRERCSLGLLPTPY*NSTTLSLMLYHLSP Trigger: TGGAGATAAATGATATAACATTAAACTCAAGGTGGTTGAGTTGCAGTAGGGAGTCGGAAGCAAGCCAAGGGAACATCTTTCTCTACAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR CAA 90 bp | GTTTGGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTCCCTTGGCTaGCTTCCGACTCCCTACTGCAACTCAACCACCTTGAGTTTAATG | + |
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Preference number: 2 (lower is better) Translates to: VWNRQVPCRERCSLG*LPTPYCNSTTLSLM Trigger: CATTAAACTCAAGGTGGTTGAGTTGCAGTAGGGAGTCGGAAGCAAGCCAAGGGAACATCTTTCTCTACAGGGGACTTGGCGATTCCAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR CAA 90 bp | GAGTCTGGATTAGATTCCAGGTGTCTTCAGTTTCTTCTTGGAACCTaGGGGGTTTGGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTCC | + |
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Preference number: 2 (lower is better) Translates to: ESGLDSRCLQFLLGT*GVWNRQVPCRERCS Trigger: GGAACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGACACCTGGAATCTAATCCAGACTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR-3UTR CCA 90 bp | ATTTTGGAGTCTGGATTAGATTCCAGGTGTCTTCAGTTTCTTCTTGGAACCTTGGGGTCAGAGCGACATTaGGACACTCACTCTGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: ILESGLDSRCLQFLLGTLGSERH*DTHSAV Trigger: CACAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCC...CAAGGTTCCAAGAAGAAACTGAAGACACCTGGAATCTAATCCAGACTCCAAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR CAA 90 bp | TGTTCCCTTGGCTTGCTTCCGACTCCCTACTGCAACTCAACCACCTaGAGTTTAATGTTATATCATTTATCTCCAAACACACACTGCATC | + |
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Preference number: 2 (lower is better) Translates to: CSLGLLPTPYCNSTT*SLMLYHLSPNTHCI Trigger: GATGCAGTGTGTGTTTGGAGATAAATGATATAACATTAAACTCAAGGTGGTTGAGTTGCAGTAGGGAGTCGGAAGCAAGCCAAGGGAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR-3UTR TCA 90 bp | TGCATCATTTTGGAGTCTGGATTAGATTCCAGGTGTCTTCAGTTTCTTCTTGGATGTGACCTAATAAGGTaGTGGTGCTATACTTCAGAC | + |
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Preference number: 2 (lower is better) Translates to: CIILESGLDSRCLQFLLGCDLIR*WCYTSD Trigger: GTCTGAAGTATAGCACCATCACCTTATTAGGTCACA...TCCAAGAAGAAACTGAAGACACCTGGAATCTAATCCAGACTCCAAAATGATGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR-3UTR CAA 90 bp | CTTCTTGGAACCTTGGGGGTTTGGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTGGGTCAGAGCGACATaGGGACACTCACTCTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: LLGTLGVWNRQVPCRERCWVRAT*GHSLCC Trigger: ACAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCA...ACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR CCA 72 bp | TTTATCTCCAAACACACACTGCATCATCAAGGGAGTTaGGTCAGAGCGACATTGGGACACTCACTCTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: FISKHTLHHQGS*VRATLGHSLCC Trigger: ACAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGTGTGTGTTTGGAGATAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR CCA 72 bp | AGGTGTCTTCAGTTTCTTCTTGGAACCTTGGGGGTTTaGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTCC | + |
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Preference number: 3 (lower is better) Translates to: RCLQFLLGTLGV*NRQVPCRERCS Trigger: GGAACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGACACCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR GCA 72 bp | GAAAGATGTTCCCTTGGCTTGCTTCCGACTCCCTACTaGAACTCAACCACCTTGAGTTTAATGTTATATCAT | + |
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Preference number: 3 (lower is better) Translates to: ERCSLGLLPTPY*NSTTLSLMLYH Trigger: ATGATATAACATTAAACTCAAGGTGGTTGAGTTGCAGTAGGGAGTCGGAAGCAAGCCAAGGGAACATCTTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR GCA 90 bp | AAGTCCCCTGTAGAGAAAGATGTTCCCTTGGCTTGCTTCCGACTCCCTACTGCAATCCCGCGTCCATCTTaGCGCCTCGCTCGGAGATCG | + |
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Preference number: 4 (lower is better) Translates to: KSPVEKDVPLACFRLPTAIPRPS*RLARRS Trigger: CGATCTCCGAGCGAGGCGGCAAGATGGACGCGGGAT...TGCAGTAGGGAGTCGGAAGCAAGCCAAGGGAACATCTTTCTCTACAGGGGACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR CAA 72 bp | CGCCAAGTCCCCTGTAGAGAAAGATGTTCCCTTGGCTaGCTTCCGACTCCCTACTGCAACTCAACCACCTTG | + |
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Preference number: 4 (lower is better) Translates to: RQVPCRERCSLG*LPTPYCNSTTL Trigger: CAAGGTGGTTGAGTTGCAGTAGGGAGTCGGAAGCAAGCCAAGGGAACATCTTTCTCTACAGGGGACTTGGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CCA 90 bp | ACACACACTGCATCATCAAGGGAGTTGGGTCAGAGCGACATTGGGACACTCACTGGGTCAGAGCGACATTaGGACACTCACTCTGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: THTASSRELGQSDIGTLTGSERH*DTHSAV Trigger: CACAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCC...AGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGTGTGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CCA 90 bp | ACTGCATCATCAAGGGAGTTGGGTCAGAGCGACATTGGGACACTCACTCTGCTGTTCTTCTTGGAACCTTaGGGGTTTGGAATCGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: TASSRELGQSDIGTLTLLFFLEP*GFGIAK Trigger: CTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAA...CAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR TCA 90 bp | AAGTCCCCTGTAGAGAAAGATGTTCCCTTGGCTTGCTTCCGACTCCCTACTGCAACACTCACTCTGCTGTaGCCTAATAAGGTGATGGTG | + |
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Preference number: 4 (lower is better) Translates to: KSPVEKDVPLACFRLPTATLTLL*PNKVMV Trigger: CACCATCACCTTATTAGGTCACAGCAGAGTGAGTGT...TGCAGTAGGGAGTCGGAAGCAAGCCAAGGGAACATCTTTCTCTACAGGGGACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR GCA 90 bp | CTTCTTGGAACCTTGGGGGTTTGGAATCGCCAAGTCCCCTGTAGAGAAAGATGTCTTCCGACTCCCTACTaGAACTCAACCACCTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: LLGTLGVWNRQVPCRERCLPTPY*NSTTLS Trigger: ACTCAAGGTGGTTGAGTTGCAGTAGGGAGTCGGAAG...ACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CCA 90 bp | ATTAGATTCCAGGTGTCTTCAGTTTCTTCTTGGAACCTTGGGGGTTTGGAATCGGGAACCTTGGGGGTTTaGAATCGCCAAGTCCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: IRFQVSSVSSWNLGGLESGTLGV*NRQVPC Trigger: ACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCC...CGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGACACCTGGAATCTAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CCA 90 bp | ACTGCATCATCAAGGGAGTTGGGTCAGAGCGACATTGGGACACTCACTCTGCTGTCTTCAGTTTCTTCTTaGAACCTTGGGGGTTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: TASSRELGQSDIGTLTLLSSVSS*NLGGLE Trigger: TTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGA...CAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR CAA 72 bp | ATTTATCTCCAAACACACACTGCATCATCAAGGGAGTaGGGTCAGAGCGACATTGGGACACTCACTCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: IYLQTHTASSRE*GQSDIGTLTLL Trigger: CAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGTGTGTGTTTGGAGATAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR GCA 90 bp | TTCTTGGAACCTTGGGGGTTTGGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTCCGATTATCCTGTTCTaGACTTGTTCCGCGGAAAAA | + |
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Preference number: 4 (lower is better) Translates to: FLEPWGFGIAKSPVEKDVPIILF*TCSAEK Trigger: TTTTTCCGCGGAACAAGTGCAGAACAGGATAATCGG...AACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CCA 90 bp | TCTCCAAACACACACTGCATCATCAAGGGAGTTGGGTCAGAGCGACATTGGGACCATCATTTTGGAGTCTaGATTAGATTCCAGGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: SPNTHCIIKGVGSERHWDHHFGV*IRFQVS Trigger: AGACACCTGGAATCTAATCCAGACTCCAAAATGATG...GTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGTGTGTGTTTGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| 3UTR CAA 72 bp | TTAGATTCCAGGTGTCTTCAGTTTCTTCTTGGAACCTaGGGGGTTTGGAATCGCCAAGTCCCCTGTAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: LDSRCLQFLLGT*GVWNRQVPCRE Trigger: TTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGACACCTGGAATCTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR TCA 90 bp | GATTCCAGGTGTCTTCAGTTTCTTCTTGGAACCTTGGGGGTTTGGAATCGCCAATGTGACCTAATAAGGTaGTGGTGCTATACTTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: DSRCLQFLLGTLGVWNRQCDLIR*WCYTSD Trigger: GTCTGAAGTATAGCACCATCACCTTATTAGGTCACA...TTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGACACCTGGAATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CCA 90 bp | TATCATTTATCTCCAAACACACACTGCATCATCAAGGGAGTTGGGTCAGAGCGAAGAAAGATGTTCCCTTaGCTTGCTTCCGACTCCCTA | + |
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Preference number: 4 (lower is better) Translates to: YHLSPNTHCIIKGVGSERRKMFP*LASDSL Trigger: TAGGGAGTCGGAAGCAAGCCAAGGGAACATCTTTCT...TCGCTCTGACCCAACTCCCTTGATGATGCAGTGTGTGTTTGGAGATAAATGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS GCA 90 bp | GCTCCGCTAGGCCCCAGGACCCGGCGGCACGCACGGCGCTCGGCCTaGAGGCCCCGCCAGGCAGGCGGGCAGCGAGGTACCATCCCGGCC | + |
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Preference number: 5 (lower is better) Translates to: APLGPRTRRHARRSA*RPRQAGGQRGTIPA Trigger: GGCCGGGATGGTACCTCGCTGCCCGCCTGCCTGGCGGGGCCTGCAGGCCGAGCGCCGTGCGTGCCGCCGGGTCCTGGGGCCTAGCGGAGC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000596378.1 |
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| CDS-3UTR CAA 90 bp | CACACTGCATCATCAAGGGAGTTGGGTCAGAGCGACATTGGGACACTCACTCTGTGGAACCTTGGGGGTTaGGAATCGCCAAGTCCCCTG | + |
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Preference number: 5 (lower is better) Translates to: HTASSRELGQSDIGTLTLWNLGG*ESPSPL Trigger: CAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCA...CAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGTGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CAA 90 bp | ATCGCCAAGTCCCCTGTAGAGAAAGATGTTCCCTTGGCTTGCTTCCGACTCCCTTATCCTGTTCTGCACTaGTTCCGCGGAAAAATCCCG | + |
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Preference number: 5 (lower is better) Translates to: IAKSPVEKDVPLACFRLPYPVLH*FRGKIP Trigger: CGGGATTTTTCCGCGGAACAAGTGCAGAACAGGATA...AGGGAGTCGGAAGCAAGCCAAGGGAACATCTTTCTCTACAGGGGACTTGGCGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CAA 90 bp | CTTCAGTTTCTTCTTGGAACCTTGGGGGTTTGGAATCGCCAAGTCCCCTGTAGATGGGTCAGAGCGACATaGGGACACTCACTCTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: LQFLLGTLGVWNRQVPCRWVRAT*GHSLCC Trigger: ACAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCA...TCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CAA 90 bp | CTTGGAACCTTGGGGGTTTGGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTCCGAGAAAGATGTTCCCTaGGCTTGCTTCCGACTCCCT | + |
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Preference number: 5 (lower is better) Translates to: LGTLGVWNRQVPCRERCSEKDVP*ACFRLP Trigger: AGGGAGTCGGAAGCAAGCCAAGGGAACATCTTTCTC...GGAACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CAA 90 bp | TTCTTGGAACCTTGGGGGTTTGGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTGCATCATCAAGGGAGTaGGGTCAGAGCGACATTGGG | + |
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Preference number: 5 (lower is better) Translates to: FLEPWGFGIAKSPVEKDVASSRE*GQSDIG Trigger: CCCAATGTCGCTCTGACCCAACTCCCTTGATGATGC...AACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CAA 90 bp | CACACTGCATCATCAAGGGAGTTGGGTCAGAGCGACATTGGGACACTCACTCTGGTCTTCAGTTTCTTCTaGGAACCTTGGGGGTTTGGA | + |
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Preference number: 5 (lower is better) Translates to: HTASSRELGQSDIGTLTLVFSFF*EPWGFG Trigger: TCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGAC...CAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGTGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS-3UTR CAA 90 bp | AAGTCCCCTGTAGAGAAAGATGTTCCCTTGGCTTGCTTCCGACTCCCTACTGCATTTCTTCTTGGAACCTaGGGGGTTTGGAATCGCCAA | + |
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Preference number: 5 (lower is better) Translates to: KSPVEKDVPLACFRLPTAFLLGT*GVWNRQ Trigger: TTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAA...TGCAGTAGGGAGTCGGAAGCAAGCCAAGGGAACATCTTTCTCTACAGGGGACTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000600523.5 |
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| CDS CCA 90 bp | ACAGATTCCAGGTGTCTTCAGTTTCTTCTTGGAACCTTGGGGGTTTaGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTCCCTTGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: TDSRCLQFLLGTLGV*NRQVPCRERCSLGL Trigger: CAAGCCAAGGGAACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGACACCTGGAATCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462710.5 |
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| CDS CCA 90 bp | TTTACACAACTCACCTCCAAACACACACTGCATCATCAAGGGAGTTaGGTCAGAGCGACATTGGGACACTCACTCTGCTGTGACCTAATA | + |
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Preference number: 5 (lower is better) Translates to: FTQLTSKHTLHHQGS*VRATLGHSLCCDLI Trigger: TATTAGGTCACAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGTGTGTGTTTGGAGGTGAGTTGTGTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000462710.5 ENST00000466910.5 |
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| CDS CCA 90 bp | AAGCAAGTACAGATTCCAGGTGTCTTCAGTTTCTTCTTGGAACCTTaGGGGTTTGGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTCCC | + |
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Preference number: 5 (lower is better) Translates to: KQVQIPGVFSFFLEP*GFGIAKSPVEKDVP Trigger: GGGAACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGACACCTGGAATCTGTACTTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462710.5 |
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| CDS TCA 90 bp | AATAATCCCAAGTTATCAAATTTCATCACAATTACAGAACATCAGTaGACATCACTGAAGCAAAGATGTTACCGAGGGGAAGTCTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: NNPKLSNFITITEHQ*TSLKQRCYRGEVSF Trigger: AAAAGAGACTTCCCCTCGGTAACATCTTTGCTTCAGTGATGTTCACTGATGTTCTGTAATTGTGATGAAATTTGATAACTTGGGATTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485541.1 |
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| CDS CCA 72 bp | ATCCTGTTCTGCACTTGTTCCCTTAGGGCTTTCCTTTaGCCTCCCACTCGGGACTTCCTCCTCCGGCTCCGC | + |
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Preference number: 6 (lower is better) Translates to: ILFCTCSLRAFL*PPTRDFLLRLR Trigger: GCGGAGCCGGAGGAGGAAGTCCCGAGTGGGAGGCCAAAGGAAAGCCCTAAGGGAACAAGTGCAGAACAGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000596378.1 |
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| CDS GCA 72 bp | CTTCTCCTCCGTCTACCACTTTTAGTCACTGGCGATTaGCATCGCTTTCCCATCTGCATCCGAGGGGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: LLLRLPLLVTGD*HRFPICIRGEV Trigger: GACTTCCCCTCGGATGCAGATGGGAAAGCGATGGCAATCGCCAGTGACTAAAAGTGGTAGACGGAGGAGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000374389.8 ENST00000461768.5 ENST00000479034.5 ENST00000596378.1 |
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| CDS CAA 72 bp | ACTTCTCCTCCGTCTACCACTTTTAGTCACTGGCGATaGCCATCGCTTTCCCATCTGCATCCGAGGGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: TSPPSTTFSHWR*PSLSHLHPRGS Trigger: ACTTCCCCTCGGATGCAGATGGGAAAGCGATGGCAATCGCCAGTGACTAAAAGTGGTAGACGGAGGAGAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000374389.8 ENST00000461768.5 ENST00000479034.5 ENST00000596378.1 |
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| CDS CCA 72 bp | GGATTCTCCAAACACACACTGCATCATCAAGGGAGTTaGGTCAGAGCGACATTGGGACACTCACTCTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: GFSKHTLHHQGS*VRATLGHSLCC Trigger: ACAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGTGTGTGTTTGGAGAATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490543.5 |
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| CDS CAA 72 bp | TGGATTCTCCAAACACACACTGCATCATCAAGGGAGTaGGGTCAGAGCGACATTGGGACACTCACTCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: WILQTHTASSRE*GQSDIGTLTLL Trigger: CAGCAGAGTGAGTGTCCCAATGTCGCTCTGACCCAACTCCCTTGATGATGCAGTGTGTGTTTGGAGAATCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490543.5 |
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| CDS CAA 90 bp | AAAGCAAGTACAGATTCCAGGTGTCTTCAGTTTCTTCTTGGAACCTaGGGGGTTTGGAATCGCCAAGTCCCCTGTAGAGAAAGATGTTCC | + |
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Preference number: 6 (lower is better) Translates to: KASTDSRCLQFLLGT*GVWNRQVPCRERCS Trigger: GGAACATCTTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGACACCTGGAATCTGTACTTGCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462710.5 |
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| CDS CAA 90 bp | AATAGCACAAAGCAAGTACAGATTCCAGGTGTCTTCAGTTTCTTCTaGGAACCTTGGGGGTTTGGAATCGCCAAGTCCCCTGTAGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: NSTKQVQIPGVFSFF*EPWGFGIAKSPVEK Trigger: TTTCTCTACAGGGGACTTGGCGATTCCAAACCCCCAAGGTTCCAAGAAGAAACTGAAGACACCTGGAATCTGTACTTGCTTTGTGCTATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462710.5 |
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| CDS CCA 72 bp | CAAAAAGGTCATATGGTACATATCTTAACTGTCCTTTaGGTTGCTGTGGCAAAACAGAAACTGTCTTACAAT | + |
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Preference number: 6 (lower is better) Translates to: QKGHMVHILTVL*VAVAKQKLSYN Trigger: ATTGTAAGACAGTTTCTGTTTTGCCACAGCAACCCAAAGGACAGTTAAGATATGTACCATATGACCTTTTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462710.5 |
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| CDS CAA 72 bp | CAGCTTTACCCAATTGCTCTTTCCTGTTTGTGTTTTTaGTTGTTGTTGTTGATGTTTGGCCACTTTACACAA | + |
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Preference number: 6 (lower is better) Translates to: QLYPIALSCLCF*LLLLMFGHFTQ Trigger: TTGTGTAAAGTGGCCAAACATCAACAACAACAACAAAAAACACAAACAGGAAAGAGCAATTGGGTAAAGCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000462710.5 ENST00000466910.5 |
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