Pregenerated sensors for SRP9 (Homo sapiens)
Ensembl gene IDs: ENSG00000143742Ensembl transcript IDs: ENST00000650651.1, ENST00000651465.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | ACACTGTTTTGCTCTATTCTCCTTGGAGGTCGTACTAGGGAAATTGCACTCAAGACCAAACACACTGTTTaGCTCTATTCTCCTTGGAGG | + |
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Preference number: 3 (lower is better) Translates to: TLFCSILLGGRTREIALKTKHTV*LYSPWR Trigger: CCTCCAAGGAGAATAGAGCAAAACAGTGTGTTTGGT...CTTGAGTGCAATTTCCCTAGTACGACCTCCAAGGAGAATAGAGCAAAACAGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651465.1 |
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| 3UTR CCA 72 bp | TCTGTTGTAGAATCTTCAAAAACAGCAACTTTAAGCTaGCAGCCCTTTCCTCATTTTGTAGTACAGATCCAC | + |
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Preference number: 3 (lower is better) Translates to: SVVESSKTATLS*QPFPHFVVQIH Trigger: GTGGATCTGTACTACAAAATGAGGAAAGGGCTGCCAGCTTAAAGTTGCTGTTTTTGAAGATTCTACAACAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650651.1 |
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| CDS-3UTR GCA 90 bp | CTGGCAGCCCTTTCCTCATTTTGTAGTACAGATCCACTTTTCTTCAGCCCATCTGGGGTTTCTCCATGTTaGCCAGGCTTGAAGATATTA | + |
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Preference number: 4 (lower is better) Translates to: LAALSSFCSTDPLFFSPSGVSPC*PGLKIL Trigger: TAATATCTTCAAGCCTGGGCAACATGGAGAAACCCC...AGATGGGCTGAAGAAAAGTGGATCTGTACTACAAAATGAGGAAAGGGCTGCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000650651.1 |
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| 3UTR CAA 72 bp | TTTGCTCTATTCTCCTTGGAGGTCGTACTAGGGAAATaGCACTCAAGTTTCCAAGCCTCCAGCAATTCCATG | + |
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Preference number: 4 (lower is better) Translates to: FALFSLEVVLGK*HSSFQASSNSM Trigger: CATGGAATTGCTGGAGGCTTGGAAACTTGAGTGCAATTTCCCTAGTACGACCTCCAAGGAGAATAGAGCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651465.1 |
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| CDS-3UTR GCA 90 bp | GTTGTAGAATCTTCAAAAACAGCAACTTTAAGCTGGCAGCCCTTTCCTCATTTTTTTGAGAACCACACGTaGCTTCATAGGGTCAGCGAG | + |
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Preference number: 4 (lower is better) Translates to: VVESSKTATLSWQPFPHFFENHT*LHRVSE Trigger: CTCGCTGACCCTATGAAGGCACGTGTGGTTCTCAAA...AAAATGAGGAAAGGGCTGCCAGCTTAAAGTTGCTGTTTTTGAAGATTCTACAAC 43% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000650651.1 |
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| CDS-3UTR GCA 90 bp | AAGTTTCCAAGCCTCCAGCAATTCCATGTCTTAAAGTACAGTAATTTAAATGCCTTTGAGAACCACACGTaGCTTCATAGGGTCAGCGAG | + |
|
Preference number: 4 (lower is better) Translates to: KFPSLQQFHVLKYSNLNAFENHT*LHRVSE Trigger: CTCGCTGACCCTATGAAGGCACGTGTGGTTCTCAAA...GGCATTTAAATTACTGTACTTTAAGACATGGAATTGCTGGAGGCTTGGAAACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651465.1 |
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| CDS-3UTR CCA 90 bp | AAAAACAGCAACTTTAAGCTGGCAGCCCTTTCCTCATTTTGTAGTACAGATCCAACAGCAACTTTAAGCTaGCAGCCCTTTCCTCATTTT | + |
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Preference number: 4 (lower is better) Translates to: KNSNFKLAALSSFCSTDPTATLS*QPFPHF Trigger: AAAATGAGGAAAGGGCTGCCAGCTTAAAGTTGCTGT...TGGATCTGTACTACAAAATGAGGAAAGGGCTGCCAGCTTAAAGTTGCTGTTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650651.1 |
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| CDS-3UTR GCA 90 bp | AAGTTTCCAAGCCTCCAGCAATTCCATGTCTTAAAGTACAGTAATTTAAATGCCCCAAACACACTGTTTTaGTCTATTCTCCTTGGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: KFPSLQQFHVLKYSNLNAPNTLF*SILLGG Trigger: ACCTCCAAGGAGAATAGAGCAAAACAGTGTGTTTGG...GGCATTTAAATTACTGTACTTTAAGACATGGAATTGCTGGAGGCTTGGAAACTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000651465.1 |
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| CDS-3UTR CCA 90 bp | TTCAAAAACAGCAACTTTAAGCTGGCAGCCCTTTCCTCATTTTGTAGTACAGATCTTAAGATCTGCTTATaGTTGGTCATAAAGCCATCT | + |
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Preference number: 4 (lower is better) Translates to: FKNSNFKLAALSSFCSTDLKICL*LVIKPS Trigger: AGATGGCTTTATGACCAACCATAAGCAGATCTTAAG...ATCTGTACTACAAAATGAGGAAAGGGCTGCCAGCTTAAAGTTGCTGTTTTTGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650651.1 |
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| CDS-3UTR CAA 90 bp | AAGTTTCCAAGCCTCCAGCAATTCCATGTCTTAAAGTACAGTAATTTAAATGCCAAGCAAGAGGACCGCTaGAGCCCAGGAGGTCGAGGA | + |
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Preference number: 5 (lower is better) Translates to: KFPSLQQFHVLKYSNLNAKQEDR*SPGGRG Trigger: TCCTCGACCTCCTGGGCTCAAGCGGTCCTCTTGCTT...GGCATTTAAATTACTGTACTTTAAGACATGGAATTGCTGGAGGCTTGGAAACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651465.1 |
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| CDS-3UTR CAA 90 bp | ACACTGTTTTGCTCTATTCTCCTTGGAGGTCGTACTAGGGAAATTGCACTCAAGGTCGTACTAGGGAAATaGCACTCAAGTTTCCAAGCC | + |
|
Preference number: 5 (lower is better) Translates to: TLFCSILLGGRTREIALKVVLGK*HSSFQA Trigger: GGCTTGGAAACTTGAGTGCAATTTCCCTAGTACGAC...CTTGAGTGCAATTTCCCTAGTACGACCTCCAAGGAGAATAGAGCAAAACAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651465.1 |
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| CDS-3UTR CAA 90 bp | AAAAACAGCAACTTTAAGCTGGCAGCCCTTTCCTCATTTTGTAGTACAGATCCACGGGGTTTCTCCATGTaGCCCAGGCTTGAAGATATT | + |
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Preference number: 5 (lower is better) Translates to: KNSNFKLAALSSFCSTDPRGFSM*PRLEDI Trigger: AATATCTTCAAGCCTGGGCAACATGGAGAAACCCCG...TGGATCTGTACTACAAAATGAGGAAAGGGCTGCCAGCTTAAAGTTGCTGTTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000650651.1 |
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| CDS-3UTR CAA 90 bp | AAGTTTCCAAGCCTCCAGCAATTCCATGTCTTAAAGTACAGTAATTTAAATGCCTTTGCTCTATTCTCCTaGGAGGTCGTACTAGGGAAA | + |
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Preference number: 5 (lower is better) Translates to: KFPSLQQFHVLKYSNLNAFALFS*EVVLGK Trigger: TTTCCCTAGTACGACCTCCAAGGAGAATAGAGCAAA...GGCATTTAAATTACTGTACTTTAAGACATGGAATTGCTGGAGGCTTGGAAACTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651465.1 |
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| CDS-3UTR CAA 90 bp | GCAACTTTAAGCTGGCAGCCCTTTCCTCATTTTGTAGTACAGATCCACTTTTCTCCATGTTGCCCAGGCTaGAAGATATTACTTTTAAAT | + |
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Preference number: 5 (lower is better) Translates to: ATLSWQPFPHFVVQIHFSPCCPG*KILLLN Trigger: ATTTAAAAGTAATATCTTCAAGCCTGGGCAACATGG...AGAAAAGTGGATCTGTACTACAAAATGAGGAAAGGGCTGCCAGCTTAAAGTTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000650651.1 |
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| CDS-3UTR CAA 90 bp | CTTAAGATCTGCTTATGGTTGGTCATAAAGCCATCTGTTGTAGAATCTTCAAAAAAGATCTGCTTATGGTaGGTCATAAAGCCATCTGTT | + |
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Preference number: 5 (lower is better) Translates to: LKICLWLVIKPSVVESSKKICLW*VIKPSV Trigger: AACAGATGGCTTTATGACCAACCATAAGCAGATCTT...TTTTGAAGATTCTACAACAGATGGCTTTATGACCAACCATAAGCAGATCTTAAG 37% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000650651.1 |
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