Pregenerated sensors for SRM (Homo sapiens)
Ensembl gene IDs: ENSG00000116649Ensembl transcript IDs: ENST00000376957.7, ENST00000465788.1, ENST00000487300.1, ENST00000490101.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTGGCGCCTGGGGCCTGGAGGGACATaGGGCCAGTCAGGAGGGCGC | + |
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Preference number: 4 (lower is better) Translates to: HPAGSKVRGPGWHQWWRLGPGGT*GQSGGR Trigger: GCGCCCTCCTGACTGGCCTCATGTCCCTCCAGGCCC...CAGGCGCCACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490101.1 |
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| CDS-3UTR GCA 90 bp | CACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTGGCGCCTGGGCCGGGCCACAGGCTaGAGGTCTCGCGGAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: HPAGSKVRGPGWHQWWRLGRATG*RSRGTS Trigger: GCTGGTTCCGCGAGACCTGCAGCCTGTGGCCCGGCC...CAGGCGCCACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR CCA 90 bp | GGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTCAGGAGGGCGCTCTaGGTCCCTGGGTCCCACCAC | + |
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Preference number: 4 (lower is better) Translates to: GAEAPRRLQGPRSWVASVVRRAL*VPGSHH Trigger: GTGGTGGGACCCAGGGACCCAGAGCGCCCTCCTGAC...CACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490101.1 |
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| CDS-3UTR GCA 90 bp | GGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGCAGGCCACCCACCTTaGGGGCAAACTCGGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GAEAPRRLQGPRSWVASVAGHPP*GQTRAA Trigger: TGCTGCCCGAGTTTGCCCGCAAGGTGGGTGGCCTGC...CACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000490101.1 |
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| CDS-3UTR CCA 90 bp | GGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTTGCAGTGACAGGGCCTaGCCGGGCCACAGGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: GRGTPQAPRSEVLGGISGCSDRA*PGHRLQ Trigger: CTGCAGCCTGTGGCCCGGCCAGGCCCTGTCACTGCA...ACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR CCA 90 bp | GGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTCCGAGGTCCTGGGTaGCATCAGTGGTGGCGCCTG | + |
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Preference number: 4 (lower is better) Translates to: GAEAPRRLQGPRSWVASVVRGPG*HQWWRL Trigger: CAGGCGCCACCACTGATGCCACCCAGGACCTCGGAC...CACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000376957.7 ENST00000490101.1 |
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| CDS-3UTR GCA 90 bp | CACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTGGCGCCTGGACTCCACGGAGGGGTaGTTCACCACCTCCCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: HPAGSKVRGPGWHQWWRLDSTEG*FTTSRR Trigger: CCTGCGGGAGGTGGTGAAGCACCCCTCCGTGGAGTC...CAGGCGCCACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR CCA 90 bp | AGGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGTCCGAGGTCCTGGGTaGCATCAGTGGTGGCGCCTG | + |
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Preference number: 4 (lower is better) Translates to: RGRGTPQAPRSEVLGGISVRGPG*HQWWRL Trigger: CAGGCGCCACCACTGATGCCACCCAGGACCTCGGAC...ACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000376957.7 ENST00000490101.1 |
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| CDS-3UTR CCA 90 bp | GGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGCAAGGTCCGAGGTCCTaGGTGGCATCAGTGGTGGCG | + |
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Preference number: 4 (lower is better) Translates to: GAEAPRRLQGPRSWVASVQGPRS*VASVVA Trigger: CGCCACCACTGATGCCACCCAGGACCTCGGACCTTG...CACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000376957.7 ENST00000490101.1 |
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| CDS-3UTR GCA 90 bp | AGGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTATCTGCGCCACCTGCTaGTGTGTCAGCGGCTGCACC | + |
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Preference number: 4 (lower is better) Translates to: RGRGTPQAPRSEVLGGISICATC*CVSGCT Trigger: GGTGCAGCCGCTGACACAGCAGCAGGTGGCGCAGAT...ACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000376957.7 ENST00000490101.1 |
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| CDS-3UTR CCA 90 bp | GGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGCACTGGCACTCGCCCTaGCAGCAGAGGACACCATCT | + |
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Preference number: 4 (lower is better) Translates to: GAEAPRRLQGPRSWVASVHWHSP*QQRTPS Trigger: AGATGGTGTCCTCTGCTGCCAGGGCGAGTGCCAGTG...CACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR CCA 90 bp | CACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTGGCGCCTGCAAGGTCCGAGGTCCTaGGTGGCATCAGTGGTGGCG | + |
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Preference number: 4 (lower is better) Translates to: HPAGSKVRGPGWHQWWRLQGPRS*VASVVA Trigger: CGCCACCACTGATGCCACCCAGGACCTCGGACCTTG...CAGGCGCCACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000376957.7 ENST00000490101.1 |
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| CDS-3UTR TCA 90 bp | AGGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGGGCCCATGGGGTCTaGGGAGTCAGTGATGATCAC | + |
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Preference number: 4 (lower is better) Translates to: RGRGTPQAPRSEVLGGISGAHGV*GVSDDH Trigger: GTGATCATCACTGACTCCTCAGACCCCATGGGCCCC...ACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR TCA 90 bp | GGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTTCTTGCTGCACAGCATaGAGCCGATCTGGCCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: GRGTPQAPRSEVLGGISGSCCTA*SRSGRW Trigger: CCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGA...ACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR CCA 90 bp | GGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTACGGGGAACAGGGACTaGCAGAACTGCCGCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: GRGTPQAPRSEVLGGISGTGNRD*QNCRIS Trigger: GGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGT...ACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR TCA 90 bp | CACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTGGCGCCTGTCTCCGTGCACTGGATaGCACCGTCCAACACCAGCA | + |
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Preference number: 4 (lower is better) Translates to: HPAGSKVRGPGWHQWWRLSPCTG*HRPTPA Trigger: TGCTGGTGTTGGACGGTGTCATCCAGTGCACGGAGA...CAGGCGCCACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR CCA 90 bp | GGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGTCTCTCTCCGTGCACTaGATGACACCGTCCAACACC | + |
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Preference number: 4 (lower is better) Translates to: GAEAPRRLQGPRSWVASVSLSVH*MTPSNT Trigger: GGTGTTGGACGGTGTCATCCAGTGCACGGAGAGAGA...CACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR CCA 90 bp | AGGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTTCGTCGATCTCACACTaGACCACGGACTCCACGGAG | + |
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Preference number: 4 (lower is better) Translates to: RGRGTPQAPRSEVLGGISSSISH*TTDSTE Trigger: CTCCGTGGAGTCCGTGGTCCAGTGTGAGATCGACGA...ACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR TCA 90 bp | CACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTGGCGCCTGCACGTGTTTGGTGAGTaGGGGGCAACAGAAGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: HPAGSKVRGPGWHQWWRLHVFGE*GATEGR Trigger: TCTGCCTTCTGTTGCCCCTCACTCACCAAACACGTG...CAGGCGCCACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR CCA 90 bp | CACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTGGCGCCTGACATCATTCAGGGCCTaGAGGGACATGAGGCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: HPAGSKVRGPGWHQWWRLTSFRA*RDMRPV Trigger: GACTGGCCTCATGTCCCTCCAGGCCCTGAATGATGT...CAGGCGCCACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490101.1 |
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| CDS-3UTR TCA 90 bp | GGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGAATACACGTGTTTGGTaGGTGAGGGGCAACAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: GAEAPRRLQGPRSWVASVNTRVW*VRGNRR Trigger: CCTTCTGTTGCCCCTCACTCACCAAACACGTGTATT...CACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR TCA 90 bp | CACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTGGCGCCTGTCTTGGAGACTTGGATaGCATCCTCGTCGATCTCAC | + |
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Preference number: 4 (lower is better) Translates to: HPAGSKVRGPGWHQWWRLSWRLG*HPRRSH Trigger: GTGAGATCGACGAGGATGTCATCCAAGTCTCCAAGA...CAGGCGCCACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS CCA 90 bp | CCATCCCGCCTAGGGGTCCCAGGGATGAGGAGCGATGGTGACACGTaGCGAGGAACGGCAGGCGGGCCGCCGGGTGGAGGCCGGGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: PSRLGVPGMRSDGDT*RGTAGGPPGGGRGG Trigger: CCCACCCCGGCCTCCACCCGGCGGCCCGCCTGCCGTTCCTCGCCACGTGTCACCATCGCTCCTCATCCCTGGGACCCCTAGGCGGGATGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000487300.1 |
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| CDS TCA 90 bp | GGTCTCCCCATCCCGCCTAGGGGTCCCAGGGATGAGGAGCGATGGTaGCACGTGGCGAGGAACGGCAGGCGGGCCGCCGGGTGGAGGCCG | + |
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Preference number: 5 (lower is better) Translates to: GLPIPPRGPRDEERW*HVARNGRRAAGWRP Trigger: CGGCCTCCACCCGGCGGCCCGCCTGCCGTTCCTCGCCACGTGTCACCATCGCTCCTCATCCCTGGGACCCCTAGGCGGGATGGGGAGACC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000487300.1 |
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| CDS-3UTR CAA 90 bp | CACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGGTGGCGCCTGCGCAGGCCACCCACCTaGCGGGCAAACTCGGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: HPAGSKVRGPGWHQWWRLRRPPT*RANSGS Trigger: GCTGCCCGAGTTTGCCCGCAAGGTGGGTGGCCTGCG...CAGGCGCCACCACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490101.1 |
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| CDS CCA 90 bp | ACATCCTGCCTTGCTCGGGGGTGTGCAGCCATTTCAGGGCACAGCTaGCCGCTGGGAGAACCAGGACTCAAACCTGGCTCTACGCCGGCA | + |
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Preference number: 5 (lower is better) Translates to: TSCLARGCAAISGHS*PLGEPGLKPGSTPA Trigger: TGCCGGCGTAGAGCCAGGTTTGAGTCCTGGTTCTCCCAGCGGCCAGCTGTGCCCTGAAATGGCTGCACACCCCCGAGCAAGGCAGGATGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000465788.1 |
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| CDS-3UTR CAA 90 bp | AGGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTAGGACACCATCTTCCTaGAGGGCTGTCTTCATGAGC | + |
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Preference number: 5 (lower is better) Translates to: RGRGTPQAPRSEVLGGISRTPSS*RAVFMS Trigger: GCTCATGAAGACAGCCCTCAAGGAAGATGGTGTCCT...ACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS-3UTR CAA 90 bp | GGGGCCGAGGCACCCCGCAGGCTCCAAGGTCCGAGGTCCTGGGTGGCATCAGTGTATAAATACACGTGTTaGGTGAGTGAGGGGCAACAG | + |
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Preference number: 5 (lower is better) Translates to: GAEAPRRLQGPRSWVASVYKYTC*VSEGQQ Trigger: CTGTTGCCCCTCACTCACCAAACACGTGTATTTATA...CACTGATGCCACCCAGGACCTCGGACCTTGGAGCCTGCGGGGTGCCTCGGCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000376957.7 |
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| CDS TCA 72 bp | CCGGGGTCTCCTCGGGCTCTGACGTGTCCTGAGGGCTaGCACGTGGAGCGGGGCGCAGACTCCGACTCCCCC | + |
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Preference number: 6 (lower is better) Translates to: PGSPRALTCPEG*HVERGADSDSP Trigger: GGGGGAGTCGGAGTCTGCGCCCCGCTCCACGTGTCAGCCCTCAGGACACGTCAGAGCCCGAGGAGACCCCGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000487300.1 |
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| CDS TCA 72 bp | ATCCCGCCTAGGGGTCCCAGGGATGAGGAGCGATGGTaGCACGTGGCGAGGAACGGCAGGCGGGCCGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: IPPRGPRDEERW*HVARNGRRAAG Trigger: CCCGGCGGCCCGCCTGCCGTTCCTCGCCACGTGTCACCATCGCTCCTCATCCCTGGGACCCCTAGGCGGGAT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487300.1 |
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| CDS CCA 72 bp | CTAGGGGTCCCAGGGATGAGGAGCGATGGTGACACGTaGCGAGGAACGGCAGGCGGGCCGCCGGGTGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: LGVPGMRSDGDT*RGTAGGPPGGG Trigger: GCCTCCACCCGGCGGCCCGCCTGCCGTTCCTCGCCACGTGTCACCATCGCTCCTCATCCCTGGGACCCCTAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487300.1 |
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| CDS GCA 72 bp | GGAGACTTGGATGACATCCTGCCTTGCTCGGGGGTGTaGAGCCATTTCAGGGCACAGCTGGCCGCTGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: GDLDDILPCSGV*SHFRAQLAAGR Trigger: TCTCCCAGCGGCCAGCTGTGCCCTGAAATGGCTGCACACCCCCGAGCAAGGCAGGATGTCATCCAAGTCTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000465788.1 |
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