Pregenerated sensors for SRGAP2C (Homo sapiens)

Ensembl gene IDs: ENSG00000171943

Ensembl transcript IDs: ENST00000367123.8

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CTGGGTTTCCTTAGGGATATTTTCTGTCACTTTATTTTGTTCCTTTaGATGAGCCACACTTTCCCATTCTTTGTATGCCTTGTAACGTTT	+
Preference number: 1 (lower is better) Translates to: LGFLRDIFCHFILFL*MSHTFPFFVCLVTF Trigger: AAACGTTACAAGGCATACAAAGAATGGGAAAGTGTGGCTCATTCAAAGGAACAAAATAAAGTGACAGAAAATATCCCTAAGGAAACCCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367123.8
3UTR-3UTR GCA 90 bp	CTTTATTTTGTTCCTTTGAATGAGCCACACTTTCCCATTCTTTGTATGCCTTGTTCACCCAGGCTGGAGTaGAGTGACACGACCTTGGCT	+
Preference number: 2 (lower is better) Translates to: LYFVPLNEPHFPILCMPCSPRLE*SDTTLA Trigger: AGCCAAGGTCGTGTCACTGCACTCCAGCCTGGGTGA...ACAAGGCATACAAAGAATGGGAAAGTGTGGCTCATTCAAAGGAACAAAATAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367123.8
3UTR-3UTR CCA 90 bp	GGTTACTCTGTAAATCAGACCTCCCCCTACAAACACAGTAATGTTTTGTGGTTTTTGACAGTGATTTTCTaGTATGTCAGGAACCAATCA	+
Preference number: 2 (lower is better) Translates to: GYSVNQTSPYKHSNVLWFLTVIF*YVRNQS Trigger: TGATTGGTTCCTGACATACCAGAAAATCACTGTCAA...AAACCACAAAACATTACTGTGTTTGTAGGGGGAGGTCTGATTTACAGAGTAACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000367123.8
3UTR GCA 72 bp	GAGTGCAGTGACACGACCTTGGCTCACTACAACCTATaGCTCCCCAGTTCAAGTAATCCTCCCACCTTAGCC	+
Preference number: 3 (lower is better) Translates to: ECSDTTLAHYNL*LPSSSNPPTLA Trigger: GGCTAAGGTGGGAGGATTACTTGAACTGGGGAGGCATAGGTTGTAGTGAGCCAAGGTCGTGTCACTGCACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367123.8
3UTR GCA 72 bp	TTCACTCTTGCACTGAGTGAAGTTCAAGTTCACTCTTaGACAGAGCTTGCACTGAGGGGAGGGATCGGCCAA	+
Preference number: 3 (lower is better) Translates to: FTLALSEVQVHS*TELALRGGIGQ Trigger: TTGGCCGATCCCTCCCCTCAGTGCAAGCTCTGTGCAAGAGTGAACTTGAACTTCACTCAGTGCAAGAGTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367123.8
3UTR CCA 72 bp	CTCAAGGAATGCGATTCTCCTCCCCGACTCCCTGCCTaGTTCGCTCATTCTTCAAGATCAAACACAAAAGTC	+
Preference number: 3 (lower is better) Translates to: LKECDSPPRLPA*FAHSSRSNTKV Trigger: GACTTTTGTGTTTGATCTTGAAGAATGAGCGAACCAGGCAGGGAGTCGGGGAGGAGAATCGCATTCCTTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367123.8
3UTR-3UTR CAA 90 bp	TCTTGCACAGAGCTTGCACTGAGGGGAGGGATCGGCCAAGGTAAAAGTGTAGGGTGCTCACATATGTGTTaGTGCATGCATAGAAAACAG	+
Preference number: 3 (lower is better) Translates to: SCTELALRGGIGQGKSVGCSHMC*CMHRKQ Trigger: CTGTTTTCTATGCATGCACAAACACATATGTGAGCA...CCCTACACTTTTACCTTGGCCGATCCCTCCCCTCAGTGCAAGCTCTGTGCAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000367123.8
3UTR GCA 72 bp	TTTCCTCAAGGAATGCGATTCTCCTCCCCGACTCCCTaGCTGGTTCGCTCATTCTTCAAGATCAAACACAAA	+
Preference number: 3 (lower is better) Translates to: FPQGMRFSSPTP*LVRSFFKIKHK Trigger: TTTGTGTTTGATCTTGAAGAATGAGCGAACCAGGCAGGGAGTCGGGGAGGAGAATCGCATTCCTTGAGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367123.8
3UTR GCA 72 bp	GAGCCAGGTTATTGCGTGCATTTATGTTTTCCCACATaGTGCTCTTTCCTCAAGGAATGCGATTCTCCTCCC	+
Preference number: 3 (lower is better) Translates to: EPGYCVHLCFPT*CSFLKECDSPP Trigger: GGGAGGAGAATCGCATTCCTTGAGGAAAGAGCAGCATGTGGGAAAACATAAATGCACGCAATAACCTGGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367123.8
3UTR CCA 72 bp	ATTGTCCAGCAAAATATGTCTGTAGGCCATGCAGACTaGCTTTGTGCTGGGTTCTTTAAAGCCGGCACAAAG	+
Preference number: 3 (lower is better) Translates to: IVQQNMSVGHAD*LCAGFFKAGTK Trigger: CTTTGTGCCGGCTTTAAAGAACCCAGCACAAAGCCAGTCTGCATGGCCTACAGACATATTTTGCTGGACAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367123.8
3UTR-3UTR CAA 90 bp	GGTTACTCTGTAAATCAGACCTCCCCCTACAAACACAGTAATGTTTTGTGGTTTAGTTCAAGTTCACTCTaGCACAGAGCTTGCACTGAG	+
Preference number: 3 (lower is better) Translates to: GYSVNQTSPYKHSNVLWFSSSSL*HRACTE Trigger: CTCAGTGCAAGCTCTGTGCAAGAGTGAACTTGAACT...AAACCACAAAACATTACTGTGTTTGTAGGGGGAGGTCTGATTTACAGAGTAACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000367123.8
CDS-3UTR GCA 90 bp	AGTGCAGTGACACGACCTTGGCTCACTACAACCTATGCCTCCCCAGTTCAAGTATCACCCAGGCTGGAGTaGAGTGACACGACCTTGGCT	+
Preference number: 4 (lower is better) Translates to: SAVTRPWLTTTYASPVQVSPRLE*SDTTLA Trigger: AGCCAAGGTCGTGTCACTGCACTCCAGCCTGGGTGA...TACTTGAACTGGGGAGGCATAGGTTGTAGTGAGCCAAGGTCGTGTCACTGCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367123.8
CDS-3UTR CCA 90 bp	AGTGCAGTGACACGACCTTGGCTCACTACAACCTATGCCTCCCCAGTTCAAGTATCCGTGTACTTGGCTTaGTGCTTCTCCTTCATCTTC	+
Preference number: 4 (lower is better) Translates to: SAVTRPWLTTTYASPVQVSVYLA*CFSFIF Trigger: GAAGATGAAGGAGAAGCACCAAGCCAAGTACACGGA...TACTTGAACTGGGGAGGCATAGGTTGTAGTGAGCCAAGGTCGTGTCACTGCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367123.8
CDS-3UTR CCA 90 bp	TCTTGCACAGAGCTTGCACTGAGGGGAGGGATCGGCCAAGGTAAAAGTGTAGGGGGTAAGTTTGATGTCTaGGTTTCCTTAGGGATATTT	+
Preference number: 4 (lower is better) Translates to: SCTELALRGGIGQGKSVGGKFDV*VSLGIF Trigger: AAATATCCCTAAGGAAACCCAGACATCAAACTTACC...CCCTACACTTTTACCTTGGCCGATCCCTCCCCTCAGTGCAAGCTCTGTGCAAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000367123.8
CDS-3UTR GCA 90 bp	CTTTATTTTGTTCCTTTGAATGAGCCACACTTTCCCATTCTTTGTATGCCTTGTGTGTACTTGGCTTGGTaGTTCTCCTTCATCTTCTCA	+
Preference number: 4 (lower is better) Translates to: LYFVPLNEPHFPILCMPCVYLAW*FSFIFS Trigger: TGAGAAGATGAAGGAGAAGCACCAAGCCAAGTACAC...ACAAGGCATACAAAGAATGGGAAAGTGTGGCTCATTCAAAGGAACAAAATAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367123.8
CDS-3UTR CAA 90 bp	GGTTACTCTGTAAATCAGACCTCCCCCTACAAACACAGTAATGTTTTGTGGTTTCTCCGTGTACTTGGCTaGGTGCTTCTCCTTCATCTT	+
Preference number: 5 (lower is better) Translates to: GYSVNQTSPYKHSNVLWFLRVLG*VLLLHL Trigger: AAGATGAAGGAGAAGCACCAAGCCAAGTACACGGAG...AAACCACAAAACATTACTGTGTTTGTAGGGGGAGGTCTGATTTACAGAGTAACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000367123.8