Pregenerated sensors for SPPL2A (Homo sapiens)
Ensembl gene IDs: ENSG00000138600Ensembl transcript IDs: ENST00000261854.10, ENST00000558934.1, ENST00000559293.1, ENST00000559527.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGACTAACACCAAGTCTCTTGCTGTTGTTGCCAATTCTTTTCTCTaGACCGCACTTTGTACATCCTCCACCAAGATTAAGAATCATTAC | + |
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Preference number: 1 (lower is better) Translates to: ETNTKSLAVVANSFL*TALCTSSTKIKNHY Trigger: GTAATGATTCTTAATCTTGGTGGAGGATGTACAAAGTGCGGTTCAGAGAAAAGAATTGGCAACAACAGCAAGAGACTTGGTGTTAGTCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000261854.10 |
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| 3UTR TCA 90 bp | GAAAGGACCCATAACTGCATTAAGCAGAGAGGGACTGACTGTCAATaGAGCTTCTCTATTTGCAATTTATTCAGCAAAAGCGAACAATTT | + |
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Preference number: 1 (lower is better) Translates to: ERTHNCIKQRGTDCQ*SFSICNLFSKSEQF Trigger: AAATTGTTCGCTTTTGCTGAATAAATTGCAAATAGAGAAGCTTCATTGACAGTCAGTCCCTCTCTGCTTAATGCAGTTATGGGTCCTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000261854.10 |
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| 3UTR CAA 90 bp | TGTATTGTAATTAAACTGAGACTAACACCAAGTCTCTTGCTGTTGTaGCCAATTCTTTTCTCTGAACCGCACTTTGTACATCCTCCACCA | + |
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Preference number: 2 (lower is better) Translates to: CIVIKLRLTPSLLLL*PILFSEPHFVHPPP Trigger: TGGTGGAGGATGTACAAAGTGCGGTTCAGAGAAAAGAATTGGCAACAACAGCAAGAGACTTGGTGTTAGTCTCAGTTTAATTACAATACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000261854.10 |
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| 3UTR GCA 72 bp | GGATACCCCATTCTCCATGATCCGCTTATTTCACATTaGATACCTGTATCAAAACATCTCATGCACTCCATA | + |
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Preference number: 3 (lower is better) Translates to: GYPILHDPLISH*IPVSKHLMHSI Trigger: TATGGAGTGCATGAGATGTTTTGATACAGGTATGCAATGTGAAATAAGCGGATCATGGAGAATGGGGTATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000261854.10 |
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| 3UTR TCA 72 bp | CATAACTGCATTAAGCAGAGAGGGACTGACTGTCAATaGAGCTTCTCTATTTGCAATTTATTCAGCAAAAGC | + |
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Preference number: 3 (lower is better) Translates to: HNCIKQRGTDCQ*SFSICNLFSKS Trigger: GCTTTTGCTGAATAAATTGCAAATAGAGAAGCTTCATTGACAGTCAGTCCCTCTCTGCTTAATGCAGTTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000261854.10 |
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| 3UTR CAA 72 bp | ATTAAACTGAGACTAACACCAAGTCTCTTGCTGTTGTaGCCAATTCTTTTCTCTGAACCGCACTTTGTACAT | + |
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Preference number: 4 (lower is better) Translates to: IKLRLTPSLLLL*PILFSEPHFVH Trigger: ATGTACAAAGTGCGGTTCAGAGAAAAGAATTGGCAACAACAGCAAGAGACTTGGTGTTAGTCTCAGTTTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000261854.10 |
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| CDS CCA 90 bp | AAAATACAATCCTTACTTTCTCATGGGGAGCTGAGGGTTGACCAGTaGCTTCCACCAAGTTTCCATCATTCTAGGATGAAACCCAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: KIQSLLSHGELRVDQ*LPPSFHHSRMKPKS Trigger: TGACTTGGGTTTCATCCTAGAATGATGGAAACTTGGTGGAAGCCACTGGTCAACCCTCAGCTCCCCATGAGAAAGTAAGGATTGTATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000559527.1 |
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| CDS CCA 72 bp | CTGGCAATTTCTCATGGGGAGCTGAGGGTTGACCAGTaGCTTCCACCAAGTTTCCATCATTCTAGGATGAAA | + |
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Preference number: 6 (lower is better) Translates to: LAISHGELRVDQ*LPPSFHHSRMK Trigger: TTTCATCCTAGAATGATGGAAACTTGGTGGAAGCCACTGGTCAACCCTCAGCTCCCCATGAGAAATTGCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000559293.1 |
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| CDS CCA 72 bp | TCCTTACTTTCTCATGGGGAGCTGAGGGTTGACCAGTaGCTTCCACCAAGTTTCCATCATTCTAGGATGAAA | + |
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Preference number: 6 (lower is better) Translates to: SLLSHGELRVDQ*LPPSFHHSRMK Trigger: TTTCATCCTAGAATGATGGAAACTTGGTGGAAGCCACTGGTCAACCCTCAGCTCCCCATGAGAAAGTAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000559527.1 |
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| CDS CCA 72 bp | CTGGCAATTTCTCATGGGGAGCTGAGGGTTGACCAGTaGCTTCCACCAAGTTTCCATCATTCTTTTCATTAT | + |
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Preference number: 6 (lower is better) Translates to: LAISHGELRVDQ*LPPSFHHSFHY Trigger: ATAATGAAAAGAATGATGGAAACTTGGTGGAAGCCACTGGTCAACCCTCAGCTCCCCATGAGAAATTGCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000558934.1 |
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