Pregenerated sensors for SPP2 (Homo sapiens)
Ensembl gene IDs: ENSG00000072080Ensembl transcript IDs: ENST00000168148.8, ENST00000373368.5, ENST00000425558.1, ENST00000492481.1
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTGCTGTTAAGAGAAAAGGAGTGTGAGGGTCAGACCACCGTGGCATaGGTTCACATTCCAGCTTTGGAGGCCAGGGACCCAGGACTCCTG | + |
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Preference number: 1 (lower is better) Translates to: LLLREKECEGQTTVA*VHIPALEARDPGLL Trigger: CAGGAGTCCTGGGTCCCTGGCCTCCAAAGCTGGAATGTGAACGCATGCCACGGTGGTCTGACCCTCACACTCCTTTTCTCTTAACAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| 3UTR CAA 90 bp | GAGTGTGAGGGTCAGACCACCGTGGCATGCGTTCACATTCCAGCTTaGGAGGCCAGGGACCCAGGACTCCTGGGAATTATTCAAAACCAG | + |
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Preference number: 2 (lower is better) Translates to: ECEGQTTVACVHIPA*EARDPGLLGIIQNQ Trigger: CTGGTTTTGAATAATTCCCAGGAGTCCTGGGTCCCTGGCCTCCAAAGCTGGAATGTGAACGCATGCCACGGTGGTCTGACCCTCACACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| 3UTR GCA 72 bp | AGAGAAAAGGAGTGTGAGGGTCAGACCACCGTGGCATaGGTTCACATTCCAGCTTTGGAGGCCAGGGACCCA | + |
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Preference number: 3 (lower is better) Translates to: REKECEGQTTVA*VHIPALEARDP Trigger: TGGGTCCCTGGCCTCCAAAGCTGGAATGTGAACGCATGCCACGGTGGTCTGACCCTCACACTCCTTTTCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| 3UTR CCA 72 bp | ACATTCCAGCTTTGGAGGCCAGGGACCCAGGACTCCTaGGAATTATTCAAAACCAGATCCGATGATACCAGA | + |
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Preference number: 3 (lower is better) Translates to: TFQLWRPGTQDS*ELFKTRSDDTR Trigger: TCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGGGTCCCTGGCCTCCAAAGCTGGAATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| 3UTR TCA 72 bp | CCAGGACTCCTGGGAATTATTCAAAACCAGATCCGATaGTACCAGACACTAGAGCAGCTATGCAAAGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: PGLLGIIQNQIR*YQTLEQLCKAA Trigger: TGCTGCTTTGCATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR GCA 90 bp | AGAGAAAAGGAGTGTGAGGGTCAGACCACCGTGGCATGCGTTCACATTCCAGCTCAGCTGCAGCGAGCATaGACGCCCTGCACCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: REKECEGQTTVACVHIPAQLQRA*TPCTCW Trigger: CCAGCAGGTGCAGGGCGTGCATGCTCGCTGCAGCTG...AGCTGGAATGTGAACGCATGCCACGGTGGTCTGACCCTCACACTCCTTTTCTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR GCA 90 bp | AGAGAAAAGGAGTGTGAGGGTCAGACCACCGTGGCATGCGTTCACATTCCAGCTTGCACGCCCTGCACCTaGTGGGCAGATACCTTCACG | + |
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Preference number: 4 (lower is better) Translates to: REKECEGQTTVACVHIPACTPCT*WADTFT Trigger: CGTGAAGGTATCTGCCCAGCAGGTGCAGGGCGTGCA...AGCTGGAATGTGAACGCATGCCACGGTGGTCTGACCCTCACACTCCTTTTCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR GCA 90 bp | GCAGCTATGCAAAGCAGCAGCTCCTTGAACAAACCAAAAGGGCGAGGGACACCTCCTTCACGGTGCTTCTaGAAACAGCTGTGGACACAT | + |
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Preference number: 4 (lower is better) Translates to: AAMQSSSSLNKPKGRGTPPSRCF*KQLWTH Trigger: ATGTGTCCACAGCTGTTTGCAGAAGCACCGTGAAGG...AGGTGTCCCTCGCCCTTTTGGTTTGTTCAAGGAGCTGCTGCTTTGCATAGCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR GCA 90 bp | CCTGGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGCAGCTATGTGGAGGAGGACCAGCTaGAGCGAGCATGCACGCCCT | + |
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Preference number: 4 (lower is better) Translates to: PGNYSKPDPMIPDTRAAMWRRTS*SEHARP Trigger: AGGGCGTGCATGCTCGCTGCAGCTGGTCCTCCTCCA...CATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR TCA 90 bp | AGAGAAAAGGAGTGTGAGGGTCAGACCACCGTGGCATGCGTTCACATTCCAGCTCAAAACCAGATCCGATaGTACCAGACACTAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: REKECEGQTTVACVHIPAQNQIR*YQTLEQ Trigger: CTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTG...AGCTGGAATGTGAACGCATGCCACGGTGGTCTGACCCTCACACTCCTTTTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR CCA 90 bp | CCTGGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGCAGCTATGACGCCCTGCACCTGCTaGGCAGATACCTTCACGGTG | + |
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Preference number: 4 (lower is better) Translates to: PGNYSKPDPMIPDTRAAMTPCTC*ADTFTV Trigger: CACCGTGAAGGTATCTGCCCAGCAGGTGCAGGGCGT...CATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR CCA 90 bp | GGCCAGGGACCCAGGACTCCTGGGAATTATTCAAAACCAGATCCGATGATACCACTTGCTCTGTGCCGGTaGTTTGGGTACCTTCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: GQGPRTPGNYSKPDPMIPLALCR*FGYLLF Trigger: AAACAGAAGGTACCCAAACCACCGGCACAGAGCAAG...TGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGGGTCCCTGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR GCA 90 bp | AATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGCAGCTATGCAAAGCCGAGCATGCACGCCCTaGACCTGCTGGGCAGATACC | + |
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Preference number: 4 (lower is better) Translates to: NYSKPDPMIPDTRAAMQSRACTP*TCWADT Trigger: GGTATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCG...GCTTTGCATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR GCA 90 bp | AGAGAAAAGGAGTGTGAGGGTCAGACCACCGTGGCATGCGTTCACATTCCAGCTGTCAGTATTTATTCTTaGTCTGTGCCGGTGGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: REKECEGQTTVACVHIPAVSIYS*SVPVVW Trigger: CCAAACCACCGGCACAGAGCAAGAATAAATACTGAC...AGCTGGAATGTGAACGCATGCCACGGTGGTCTGACCCTCACACTCCTTTTCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR CCA 90 bp | CCCAGGACTCCTGGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGATTCACATTCCAGCTTTaGAGGCCAGGGACCCAGGAC | + |
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Preference number: 4 (lower is better) Translates to: PRTPGNYSKPDPMIPDTRFTFQL*RPGTQD Trigger: GTCCTGGGTCCCTGGCCTCCAAAGCTGGAATGTGAA...TCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR CCA 90 bp | CCCAGGACTCCTGGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGAAGGGTCAGACCACCGTaGCATGCGTTCACATTCCAG | + |
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Preference number: 4 (lower is better) Translates to: PRTPGNYSKPDPMIPDTRRVRPP*HAFTFQ Trigger: CTGGAATGTGAACGCATGCCACGGTGGTCTGACCCT...TCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR GCA 90 bp | GGCCAGGGACCCAGGACTCCTGGGAATTATTCAAAACCAGATCCGATGATACCAAAATCATCTCTTCGCTaGTGTAAGACTCAGACGTGG | + |
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Preference number: 4 (lower is better) Translates to: GQGPRTPGNYSKPDPMIPKSSLR*CKTQTW Trigger: CCACGTCTGAGTCTTACAGCAGCGAAGAGATGATTT...TGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGGGTCCCTGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR CCA 90 bp | CCCAGGACTCCTGGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGATCTGTGCCGGTGGTTTaGGTACCTTCTGTTTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: PRTPGNYSKPDPMIPDTRSVPVV*VPSVSR Trigger: CCTGGAAACAGAAGGTACCCAAACCACCGGCACAGA...TCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR TCA 90 bp | GCAGCTATGCAAAGCAGCAGCTCCTTGAACAAACCAAAAGGGCGAGGGACACCTTTTTTAATGAGCTTCTaGATGCCCGAAACAGATACG | + |
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Preference number: 4 (lower is better) Translates to: AAMQSSSSLNKPKGRGTPFLMSF*MPETDT Trigger: CGTATCTGTTTCGGGCATTCAGAAGCTCATTAAAAA...AGGTGTCCCTCGCCCTTTTGGTTTGTTCAAGGAGCTGCTGCTTTGCATAGCTGC 48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR TCA 90 bp | AGAGAAAAGGAGTGTGAGGGTCAGACCACCGTGGCATGCGTTCACATTCCAGCTTCTCATGATCCCAAGTaGCCGATCATAAAATTGTTC | + |
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Preference number: 4 (lower is better) Translates to: REKECEGQTTVACVHIPASHDPK*PIIKLF Trigger: GAACAATTTTATGATCGGTCACTTGGGATCATGAGA...AGCTGGAATGTGAACGCATGCCACGGTGGTCTGACCCTCACACTCCTTTTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR TCA 90 bp | GGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGCAGCTATGCAAAAGAGAAAAGGAGTGTaGGGGTCAGACCACCGTGGC | + |
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Preference number: 4 (lower is better) Translates to: GNYSKPDPMIPDTRAAMQKRKGV*GSDHRG Trigger: GCCACGGTGGTCTGACCCTCACACTCCTTTTCTCTT...TTGCATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR TCA 90 bp | CCCAGGACTCCTGGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGTACACTGGGAAACCTaGGCAAGACCAGTAGTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: PRTPGNYSKPDPMIPDTRVHWET*ARPVVH Trigger: ATGAACTACTGGTCTTGCTCAGGTTTCCCAGTGTAC...TCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR TCA 90 bp | AATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGCAGCTATGCAAAGCTTACCACAGAGGCACTaGGGGCATCCCTTAAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: NYSKPDPMIPDTRAAMQSLPQRH*GHPLRR Trigger: CCTCCTTAAGGGATGCCCTCAGTGCCTCTGTGGTAA...GCTTTGCATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR GCA 90 bp | GGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGCAGCTATGCAACAGACCACCGTGGCATaGGTTCACATTCCAGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: GNYSKPDPMIPDTRAAMQQTTVA*VHIPAL Trigger: CAAAGCTGGAATGTGAACGCATGCCACGGTGGTCTG...TTGCATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR CCA 90 bp | AATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGCAGCTATGCAAAGCTGTAAGACTCAGACGTaGAGGAGGACCAGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: NYSKPDPMIPDTRAAMQSCKTQT*RRTSCS Trigger: GCTGCAGCTGGTCCTCCTCCACGTCTGAGTCTTACA...GCTTTGCATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR TCA 90 bp | CCCAGGACTCCTGGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGATTGTTTCTCCATTTATaGGATCCCAACATGTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: PRTPGNYSKPDPMIPDTRLFLHL*DPNMSP Trigger: TGGGGACATGTTGGGATCTCATAAATGGAGAAACAA...TCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR TCA 90 bp | GGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGCAGCTATGCAACAGATACGGACTCAGTaGCTGGGAATTCACTTTTAC | + |
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Preference number: 4 (lower is better) Translates to: GNYSKPDPMIPDTRAAMQQIRTQ*LGIHFY Trigger: GTAAAAGTGAATTCCCAGTCACTGAGTCCGTATCTG...TTGCATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS GCA 90 bp | GACGTGGAGGAGGACCAGCTGCAGCGAGCATGCACGCCCTGCACCTaGTGGGCAGATACCTTCACGGTGCTTCTGCAAACAGCTGTGGAC | + |
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Preference number: 5 (lower is better) Translates to: DVEEDQLQRACTPCT*WADTFTVLLQTAVD Trigger: GTCCACAGCTGTTTGCAGAAGCACCGTGAAGGTATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCGCTGCAGCTGGTCCTCCTCCACGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000425558.1 |
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| CDS GCA 90 bp | GACTCAGACGTGGAGGAGGACCAGCTGCAGCGAGCATGCACGCCCTaGACCTGCTGGGCAGATACCTTCACGGTGCTTCTGCAAACAGCT | + |
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Preference number: 5 (lower is better) Translates to: DSDVEEDQLQRACTP*TCWADTFTVLLQTA Trigger: AGCTGTTTGCAGAAGCACCGTGAAGGTATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCGCTGCAGCTGGTCCTCCTCCACGTCTGAGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000425558.1 |
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| CDS CCA 90 bp | GTGGAGGAGGACCAGCTGCAGCGAGCATGCACGCCCTGCACCTGCTaGGCAGATACCTTCACGGTGCTTCTGCAAACAGCTGTGGACACA | + |
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Preference number: 5 (lower is better) Translates to: VEEDQLQRACTPCTC*ADTFTVLLQTAVDT Trigger: TGTGTCCACAGCTGTTTGCAGAAGCACCGTGAAGGTATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCGCTGCAGCTGGTCCTCCTCCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000425558.1 |
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| CDS CCA 90 bp | ACATGTCCCCAAAAATCATCTCTTCGCTGCTGTAAGACTCAGACGTaGAGGAGGACCAGCTGCAGCGAGCATGCACGCCCTGCACCTGCT | + |
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Preference number: 5 (lower is better) Translates to: TCPQKSSLRCCKTQT*RRTSCSEHARPAPA Trigger: AGCAGGTGCAGGGCGTGCATGCTCGCTGCAGCTGGTCCTCCTCCACGTCTGAGTCTTACAGCAGCGAAGAGATGATTTTTGGGGACATGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000425558.1 |
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| CDS-3UTR CAA 90 bp | GCAGCTATGCAAAGCAGCAGCTCCTTGAACAAACCAAAAGGGCGAGGGACACCTGTTCACATTCCAGCTTaGGAGGCCAGGGACCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: AAMQSSSSLNKPKGRGTPVHIPA*EARDPG Trigger: TCCTGGGTCCCTGGCCTCCAAAGCTGGAATGTGAAC...AGGTGTCCCTCGCCCTTTTGGTTTGTTCAAGGAGCTGCTGCTTTGCATAGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS TCA 90 bp | GATACGGACTCAGTGACTGGGAATTCACTTTTACCACAGAGGCACTaGGGGCATCCCTTAAGGAGGATGGATCGTAGTCGTACACTGGGA | + |
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Preference number: 5 (lower is better) Translates to: DTDSVTGNSLLPQRH*GHPLRRMDRSRTLG Trigger: TCCCAGTGTACGACTACGATCCATCCTCCTTAAGGGATGCCCTCAGTGCCTCTGTGGTAAAAGTGAATTCCCAGTCACTGAGTCCGTATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000492481.1 |
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| CDS-3UTR CAA 90 bp | GGCCAGGGACCCAGGACTCCTGGGAATTATTCAAAACCAGATCCGATGATACCACAAAGCAGCAGCTCCTaGAACAAACCAAAAGGGCGA | + |
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Preference number: 5 (lower is better) Translates to: GQGPRTPGNYSKPDPMIPQSSSS*NKPKGR Trigger: TCGCCCTTTTGGTTTGTTCAAGGAGCTGCTGCTTTG...TGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGGGTCCCTGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR CAA 90 bp | CCCAGGACTCCTGGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGACTCTGTGCCGGTGGTTaGGGTACCTTCTGTTTCCAG | + |
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Preference number: 5 (lower is better) Translates to: PRTPGNYSKPDPMIPDTRLCAGG*GTFCFQ Trigger: CTGGAAACAGAAGGTACCCAAACCACCGGCACAGAG...TCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGGAGTCCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS GCA 90 bp | ACACCTCAAGGCCGTTACTCAAAGTCAGTATTTATTCTTGCTCTGTaGCGGTGGTTTGGGTACCTTCTGTTTCCAGGAGGCAATACCCTT | + |
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Preference number: 5 (lower is better) Translates to: TPQGRYSKSVFILAL*RWFGYLLFPGGNTL Trigger: AAGGGTATTGCCTCCTGGAAACAGAAGGTACCCAAACCACCGGCACAGAGCAAGAATAAATACTGACTTTGAGTAACGGCCTTGAGGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS CCA 90 bp | CAAGGCCGTTACTCAAAGTCAGTATTTATTCTTGCTCTGTGCCGGTaGTTTGGGTACCTTCTGTTTCCAGGAGGCAATACCCTTCTCATG | + |
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Preference number: 5 (lower is better) Translates to: QGRYSKSVFILALCR*FGYLLFPGGNTLLM Trigger: CATGAGAAGGGTATTGCCTCCTGGAAACAGAAGGTACCCAAACCACCGGCACAGAGCAAGAATAAATACTGACTTTGAGTAACGGCCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000168148.8 ENST00000373368.5 |
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| CDS-3UTR CAA 90 bp | GCAGCTATGCAAAGCAGCAGCTCCTTGAACAAACCAAAAGGGCGAGGGACACCTAAATTCATGACCAAGTaGTTCTCATCTAGGACCTCA | + |
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Preference number: 5 (lower is better) Translates to: AAMQSSSSLNKPKGRGTPKFMTK*FSSRTS Trigger: TGAGGTCCTAGATGAGAACAACTTGGTCATGAATTT...AGGTGTCCCTCGCCCTTTTGGTTTGTTCAAGGAGCTGCTGCTTTGCATAGCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR CAA 90 bp | GCAGCTATGCAAAGCAGCAGCTCCTTGAACAAACCAAAAGGGCGAGGGACACCTTCCTTCCATTGCATTTaGCTGTTAAGAGAAAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: AAMQSSSSLNKPKGRGTPSFHCI*LLREKE Trigger: CTCCTTTTCTCTTAACAGCAAAATGCAATGGAAGGA...AGGTGTCCCTCGCCCTTTTGGTTTGTTCAAGGAGCTGCTGCTTTGCATAGCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS GCA 90 bp | TTTGCTCAAGGCCGTTACTCAAAGTCAGTATTTATTCTTGCTCTGTaGCGGTGGTTTGGGTACCTTCTGTTTCCAGGAGGCAATACCCTT | + |
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Preference number: 5 (lower is better) Translates to: FAQGRYSKSVFILAL*RWFGYLLFPGGNTL Trigger: AAGGGTATTGCCTCCTGGAAACAGAAGGTACCCAAACCACCGGCACAGAGCAAGAATAAATACTGACTTTGAGTAACGGCCTTGAGCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373368.5 |
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| CDS CCA 90 bp | TTTAATGAGCTTCTGAATGCCCGAAACAGATACGGACTCAGTGACTaGGAATTCACTTTTACCACAGAGGCACTGAGGGCATCCCTTAAG | + |
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Preference number: 5 (lower is better) Translates to: FNELLNARNRYGLSD*EFTFTTEALRASLK Trigger: CTTAAGGGATGCCCTCAGTGCCTCTGTGGTAAAAGTGAATTCCCAGTCACTGAGTCCGTATCTGTTTCGGGCATTCAGAAGCTCATTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000492481.1 |
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| CDS-3UTR CAA 90 bp | CCTGGGAATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGCAGCTATGAGTCAGTATTTATTCTaGCTCTGTGCCGGTGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: PGNYSKPDPMIPDTRAAMSQYLF*LCAGGL Trigger: CAAACCACCGGCACAGAGCAAGAATAAATACTGACT...CATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATTCCCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS-3UTR CAA 90 bp | AATTATTCAAAACCAGATCCGATGATACCAGACACTAGAGCAGCTATGCAAAGCTGTCTCTCTATGTGTTaGGGGATGACAGTTCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: NYSKPDPMIPDTRAAMQSCLSMC*GMTVLP Trigger: AGGAAGAACTGTCATCCCCAAACACATAGAGAGACA...GCTTTGCATAGCTGCTCTAGTGTCTGGTATCATCGGATCTGGTTTTGAATAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS GCA 72 bp | GAGGACCAGCTGCAGCGAGCATGCACGCCCTGCACCTaGTGGGCAGATACCTTCACGGTGCTTCTGCAAACA | + |
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Preference number: 6 (lower is better) Translates to: EDQLQRACTPCT*WADTFTVLLQT Trigger: TGTTTGCAGAAGCACCGTGAAGGTATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCGCTGCAGCTGGTCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000425558.1 |
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| CDS CCA 72 bp | GACCAGCTGCAGCGAGCATGCACGCCCTGCACCTGCTaGGCAGATACCTTCACGGTGCTTCTGCAAACAGCT | + |
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Preference number: 6 (lower is better) Translates to: DQLQRACTPCTC*ADTFTVLLQTA Trigger: AGCTGTTTGCAGAAGCACCGTGAAGGTATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCGCTGCAGCTGGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000425558.1 |
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| CDS GCA 72 bp | GCACGCCCTGCACCTGCTGGGCAGATACCTTCACGGTaGTTCTGCAAACAGCTGTGGACACATAGTAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: ARPAPAGQIPSR*FCKQLWTHSSP Trigger: GGGACTACTATGTGTCCACAGCTGTTTGCAGAAGCACCGTGAAGGTATCTGCCCAGCAGGTGCAGGGCGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000425558.1 |
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| CDS CCA 72 bp | CAAAAATCATCTCTTCGCTGCTGTAAGACTCAGACGTaGAGGAGGACCAGCTGCAGCGAGCATGCACGCCCT | + |
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Preference number: 6 (lower is better) Translates to: QKSSLRCCKTQT*RRTSCSEHARP Trigger: AGGGCGTGCATGCTCGCTGCAGCTGGTCCTCCTCCACGTCTGAGTCTTACAGCAGCGAAGAGATGATTTTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000425558.1 |
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| CDS CAA 90 bp | GGCGAGGGACACCTCAAGGCCGTTACTCAAAGTCAGTATTTATTCTaGCTCTGTGCCGGTGGTTTGGGTACCTTCTGTTTCCAGGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: GEGHLKAVTQSQYLF*LCAGGLGTFCFQEA Trigger: TGCCTCCTGGAAACAGAAGGTACCCAAACCACCGGCACAGAGCAAGAATAAATACTGACTTTGAGTAACGGCCTTGAGGTGTCCCTCGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS CAA 90 bp | CCGATGATACCAGACACTAGAGCAGCTATGCAAAGCAGCAGCTCCTaGAACAAACCAAAAGGGCGAGGGACACCTCAAGGCCGTTACTCA | + |
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Preference number: 6 (lower is better) Translates to: PMIPDTRAAMQSSSS*NKPKGRGTPQGRYS Trigger: TGAGTAACGGCCTTGAGGTGTCCCTCGCCCTTTTGGTTTGTTCAAGGAGCTGCTGCTTTGCATAGCTGCTCTAGTGTCTGGTATCATCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS CAA 90 bp | CATTGCATTTTGCTCAAGGCCGTTACTCAAAGTCAGTATTTATTCTaGCTCTGTGCCGGTGGTTTGGGTACCTTCTGTTTCCAGGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: HCILLKAVTQSQYLF*LCAGGLGTFCFQEA Trigger: TGCCTCCTGGAAACAGAAGGTACCCAAACCACCGGCACAGAGCAAGAATAAATACTGACTTTGAGTAACGGCCTTGAGCAAAATGCAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373368.5 |
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| CDS CAA 72 bp | CAAAGTCAGTATTTATTCTTGCTCTGTGCCGGTGGTTaGGGTACCTTCTGTTTCCAGGAGGCAATACCCTTC | + |
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Preference number: 6 (lower is better) Translates to: QSQYLFLLCAGG*GTFCFQEAIPF Trigger: GAAGGGTATTGCCTCCTGGAAACAGAAGGTACCCAAACCACCGGCACAGAGCAAGAATAAATACTGACTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000168148.8 ENST00000373368.5 ENST00000425558.1 |
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| CDS CAA 72 bp | CACCTCAAGGCCGTTACTCAAAGTCAGTATTTATTCTaGCTCTGTGCCGGTGGTTTGGGTACCTTCTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: HLKAVTQSQYLF*LCAGGLGTFCF Trigger: GAAACAGAAGGTACCCAAACCACCGGCACAGAGCAAGAATAAATACTGACTTTGAGTAACGGCCTTGAGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000168148.8 |
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| CDS TCA 72 bp | TCTCATCTAGGACCTCAACTCTTTTTAATGAGCTTCTaGATGCCCGAAACAGATACGGACTCAGTGACTGGG | + |
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Preference number: 6 (lower is better) Translates to: SHLGPQLFLMSF*MPETDTDSVTG Trigger: CCCAGTCACTGAGTCCGTATCTGTTTCGGGCATTCAGAAGCTCATTAAAAAGAGTTGAGGTCCTAGATGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000168148.8 ENST00000373368.5 |
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| CDS CAA 72 bp | TTGCTCAAGGCCGTTACTCAAAGTCAGTATTTATTCTaGCTCTGTGCCGGTGGTTTGGGTACCTTCTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: LLKAVTQSQYLF*LCAGGLGTFCF Trigger: GAAACAGAAGGTACCCAAACCACCGGCACAGAGCAAGAATAAATACTGACTTTGAGTAACGGCCTTGAGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373368.5 |
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| CDS TCA 72 bp | ATTAGATCCCATTTGTCAATCTTTTTAATGAGCTTCTaGATGCCCGAAACAGATACGGACTCAGTGACTGGG | + |
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Preference number: 6 (lower is better) Translates to: IRSHLSIFLMSF*MPETDTDSVTG Trigger: CCCAGTCACTGAGTCCGTATCTGTTTCGGGCATTCAGAAGCTCATTAAAAAGATTGACAAATGGGATCTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000492481.1 |
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| CDS CAA 72 bp | GTCTCCCGGATGCTGAACTCTAAATTCATGACCAAGTaGTTCTCATCTAGGACCTCAACTCTTTTTAATGAG | + |
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Preference number: 6 (lower is better) Translates to: VSRMLNSKFMTK*FSSRTSTLFNE Trigger: CTCATTAAAAAGAGTTGAGGTCCTAGATGAGAACAACTTGGTCATGAATTTAGAGTTCAGCATCCGGGAGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000168148.8 ENST00000373368.5 |
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| CDS CAA 90 bp | CTGCATGTAGTCTCCCGGATGCTGAACTCTAAATTCATGACCAAGTaGTTCTCATCTAGGACCTCAACTCTTTTTAATGAGCTTCTGAAT | + |
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Preference number: 6 (lower is better) Translates to: LHVVSRMLNSKFMTK*FSSRTSTLFNELLN Trigger: ATTCAGAAGCTCATTAAAAAGAGTTGAGGTCCTAGATGAGAACAACTTGGTCATGAATTTAGAGTTCAGCATCCGGGAGACTACATGCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000168148.8 ENST00000373368.5 |
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