RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPINK4 (Homo sapiens)

Ensembl gene IDs: ENSG00000122711

Ensembl transcript IDs: ENST00000379721.4, ENST00000379725.5

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCCCAGCTGACACTTCATaGCTTGAGGTGCTCCTGTGG +
Preference number: 2 (lower is better)
Translates to: VGLDLLFHVISSPCPPLFPADTS*LEVLLW
Trigger: CCACAGGAGCACCTCAAGCCATGAAGTGTCAGCTGG...GAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR TCA 90 bp TTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCTGGCGGACGGCCATGCTaGTCCTGGGATAGTGTAGCC +
Preference number: 4 (lower is better)
Translates to: LGWIFYFMSYPLHAHHCSGGRPC*SWDSVA
Trigger: GGCTACACTATCCCAGGATCAGCATGGCCGTCCGCC...AGAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR GCA 90 bp CAGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTAGGGAGCTTTCCTGCTaGCACTGGCACTTCCCTGTC +
Preference number: 4 (lower is better)
Translates to: QLGWIFYFMSYPLHAHHCRELSC*HWHFPV
Trigger: GACAGGGAAGTGCCAGTGGCAGCAGGAAAGCTCCCT...ACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CCA 90 bp TTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCTAGGGCGATTACCCACTaGCGGACGGCCATGCTGATC +
Preference number: 4 (lower is better)
Translates to: LGWIFYFMSYPLHAHHCSRAITH*RTAMLI
Trigger: GATCAGCATGGCCGTCCGCCAGTGGGTAATCGCCCT...AGAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR GCA 90 bp CAGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTGAAAGGGAGCTTTCCTaGTGCCACTGGCACTTCCCT +
Preference number: 4 (lower is better)
Translates to: QLGWIFYFMSYPLHAHHCERELS*CHWHFP
Trigger: AGGGAAGTGCCAGTGGCAGCAGGAAAGCTCCCTTTC...ACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CCA 90 bp CAGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTGCCGCAGACCAGGTTaGACATCTGGGAACAGGTTG +
Preference number: 4 (lower is better)
Translates to: QLGWIFYFMSYPLHAHHCCRRPG*TSGNRL
Trigger: CAACCTGTTCCCAGATGTCCAACCTGGTCTGCGGCA...ACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CCA 90 bp CAGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTCCAGCTGACACTTCATaGCTTGAGGTGCTCCTGTGG +
Preference number: 4 (lower is better)
Translates to: QLGWIFYFMSYPLHAHHCPADTS*LEVLLW
Trigger: CCACAGGAGCACCTCAAGCCATGAAGTGTCAGCTGG...ACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR GCA 90 bp TCAGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGGTCATATCCTCTCCATaGCCACCACTGTTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: SVGLDLLFHVISSPCPPLVISSP*PPLFSS
Trigger: GCTGGAGAACAGTGGTGGGCATGGAGAGGATATGAC...CAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CCA 90 bp AGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCTTTCCTGCTGCCACTaGCACTTCCCTGTCCACAAC +
Preference number: 4 (lower is better)
Translates to: SWAGSFISCHILSMPTTVLSCCH*HFPVHN
Trigger: GTTGTGGACAGGGAAGTGCCAGTGGCAGCAGGAAAG...AACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CCA 90 bp CAGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTCGGGCCAAGCAGAGCTaGCATTCATTCGTATATGTG +
Preference number: 4 (lower is better)
Translates to: QLGWIFYFMSYPLHAHHCRAKQS*HSFVYV
Trigger: CACATATACGAATGAATGCCAGCTCTGCTTGGCCCG...ACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CCA 90 bp GTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCCTTGAGGTGCTCCTGTaGGATCAGCATTTGCCATCT +
Preference number: 4 (lower is better)
Translates to: VGLDLLFHVISSPCPPLFLEVLL*DQHLPS
Trigger: AGATGGCAAATGCTGATCCCACAGGAGCACCTCAAG...GAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR TCA 90 bp TCAGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGATTCATTCGTATATGTaGGCCCATCAGTGCCGCAGA +
Preference number: 4 (lower is better)
Translates to: SVGLDLLFHVISSPCPPLIHSYM*AHQCRR
Trigger: TCTGCGGCACTGATGGGCTCACATATACGAATGAAT...CAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR GCA 90 bp TTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCTCTTCATGGCTTGAGGTaGTCCTGTGGGATCAGCATT +
Preference number: 4 (lower is better)
Translates to: LGWIFYFMSYPLHAHHCSLHGLR*SCGISI
Trigger: AATGCTGATCCCACAGGAGCACCTCAAGCCATGAAG...AGAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CCA 90 bp TTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCTACCAGGTTGGACATCTaGGAACAGGTTGGAGACTCT +
Preference number: 4 (lower is better)
Translates to: LGWIFYFMSYPLHAHHCSTRLDI*EQVGDS
Trigger: AGAGTCTCCAACCTGTTCCCAGATGTCCAACCTGGT...AGAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CCA 90 bp TTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCTCATCTGGGAACAGGTTaGAGACTCTACCATGTGTTC +
Preference number: 4 (lower is better)
Translates to: LGWIFYFMSYPLHAHHCSHLGTG*RLYHVF
Trigger: GAACACATGGTAGAGTCTCCAACCTGTTCCCAGATG...AGAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CCA 90 bp TTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCTTCTGGATGTCCTGTTTaGTTTTTATCCGGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: LGWIFYFMSYPLHAHHCSSGCPV*FLSGPS
Trigger: GCTTGGCCCGGATAAAAACCAAACAGGACATCCAGA...AGAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR TCA 90 bp CAGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTATTTGCCATCTTTCATaGTCTGGATGTCCTGTTTGG +
Preference number: 4 (lower is better)
Translates to: QLGWIFYFMSYPLHAHHCICHLS*SGCPVW
Trigger: CCAAACAGGACATCCAGATCATGAAAGATGGCAAAT...ACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CCA 90 bp AGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCCATCTTTCATGATCTaGATGTCCTGTTTGGTTTTT +
Preference number: 4 (lower is better)
Translates to: SWAGSFISCHILSMPTTVPSFMI*MSCLVF
Trigger: AAAAACCAAACAGGACATCCAGATCATGAAAGATGG...AACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS TCA 90 bp TGGTTTTTATCCGGGCCAAGCAGAGCTGGCATTCATTCGTATATGTaGGCCCATCAGTGCCGCAGACCAGGTTGGACATCTGGGAACAGG +
Preference number: 5 (lower is better)
Translates to: WFLSGPSRAGIHSYM*AHQCRRPGWTSGNR
Trigger: CCTGTTCCCAGATGTCCAACCTGGTCTGCGGCACTGATGGGCTCACATATACGAATGAATGCCAGCTCTGCTTGGCCCGGATAAAAACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS GCA 90 bp TGTGTGTGCCCTCCAGAGTCCAGAGAAGGTGAGGTGAGCTCCCAATaGCCAGGATCATCAGGATGTAGACTTCTTGCTATTCTACCTGTG +
Preference number: 5 (lower is better)
Translates to: CVCPPESREGEVSSQ*PGSSGCRLLAILPV
Trigger: CACAGGTAGAATAGCAAGAAGTCTACATCCTGATGATCCTGGGCATTGGGAGCTCACCTCACCTTCTCTGGACTCTGGAGGGCACACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379725.5
CDS CCA 90 bp TCATATCCTCTCCATGCCCACCACTGTTCTCCAGCTGACACTTCATaGCTTGAGGTGCTCCTGTGGGATCAGCATTTGCCATCTTTCATG +
Preference number: 5 (lower is better)
Translates to: SYPLHAHHCSPADTS*LEVLLWDQHLPSFM
Trigger: CATGAAAGATGGCAAATGCTGATCCCACAGGAGCACCTCAAGCCATGAAGTGTCAGCTGGAGAACAGTGGTGGGCATGGAGAGGATATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS-3UTR CAA 90 bp GTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCGTGCCGCAGACCAGGTaGGACATCTGGGAACAGGTT +
Preference number: 5 (lower is better)
Translates to: VGLDLLFHVISSPCPPLFVPQTR*DIWEQV
Trigger: AACCTGTTCCCAGATGTCCAACCTGGTCTGCGGCAC...GAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS TCA 90 bp CATGGCTTGAGGTGCTCCTGTGGGATCAGCATTTGCCATCTTTCATaGTCTGGATGTCCTGTTTGGTTTTTATCCGGGCCAAGCAGAGCT +
Preference number: 5 (lower is better)
Translates to: HGLRCSCGISICHLS*SGCPVWFLSGPSRA
Trigger: AGCTCTGCTTGGCCCGGATAAAAACCAAACAGGACATCCAGATCATGAAAGATGGCAAATGCTGATCCCACAGGAGCACCTCAAGCCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS CCA 90 bp CTTGAGGTGCTCCTGTGGGATCAGCATTTGCCATCTTTCATGATCTaGATGTCCTGTTTGGTTTTTATCCGGGCCAAGCAGAGCTGGCAT +
Preference number: 5 (lower is better)
Translates to: LEVLLWDQHLPSFMI*MSCLVFIRAKQSWH
Trigger: ATGCCAGCTCTGCTTGGCCCGGATAAAAACCAAACAGGACATCCAGATCATGAAAGATGGCAAATGCTGATCCCACAGGAGCACCTCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS CCA 90 bp CACCACTGTTCTCCAGCTGACACTTCATGGCTTGAGGTGCTCCTGTaGGATCAGCATTTGCCATCTTTCATGATCTGGATGTCCTGTTTG +
Preference number: 5 (lower is better)
Translates to: HHCSPADTSWLEVLL*DQHLPSFMIWMSCL
Trigger: CAAACAGGACATCCAGATCATGAAAGATGGCAAATGCTGATCCCACAGGAGCACCTCAAGCCATGAAGTGTCAGCTGGAGAACAGTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS-3UTR CAA 90 bp CAGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTCTGACACTTCATGGCTaGAGGTGCTCCTGTGGGATC +
Preference number: 5 (lower is better)
Translates to: QLGWIFYFMSYPLHAHHCLTLHG*RCSCGI
Trigger: GATCCCACAGGAGCACCTCAAGCCATGAAGTGTCAG...ACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS CCA 90 bp AATGCCCAGGATCATCAGGATGTAGACTTCTTGCTATTCTACCTGTaGTCTGGCAGAGGGGGAGCTAGGGCAATAAATACCCTGGCATAT +
Preference number: 5 (lower is better)
Translates to: NAQDHQDVDFLLFYL*SGRGGARAINTLAY
Trigger: ATATGCCAGGGTATTTATTGCCCTAGCTCCCCCTCTGCCAGACCACAGGTAGAATAGCAAGAAGTCTACATCCTGATGATCCTGGGCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000379725.5
CDS-3UTR CAA 90 bp GTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCCACAGATGGGCATTCTaGAGAAAGGGAGCTTTCCTG +
Preference number: 5 (lower is better)
Translates to: VGLDLLFHVISSPCPPLFHRWAF*RKGAFL
Trigger: CAGGAAAGCTCCCTTTCTCAAGAATGCCCATCTGTG...GAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CAA 90 bp TCAGTTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGACATCTGGGAACAGGTaGGAGACTCTACCATGTGTT +
Preference number: 5 (lower is better)
Translates to: SVGLDLLFHVISSPCPPLTSGNR*ETLPCV
Trigger: AACACATGGTAGAGTCTCCAACCTGTTCCCAGATGT...CAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS-3UTR CAA 90 bp TTGGGCTGGATCTTTTATTTCATGTCATATCCTCTCCATGCCCACCACTGTTCTATCTGGATGTCCTGTTaGGTTTTTATCCGGGCCAAG +
Preference number: 5 (lower is better)
Translates to: LGWIFYFMSYPLHAHHCSIWMSC*VFIRAK
Trigger: CTTGGCCCGGATAAAAACCAAACAGGACATCCAGAT...AGAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATCCAGCCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000379721.4
CDS TCA 72 bp TCCGGGCCAAGCAGAGCTGGCATTCATTCGTATATGTaGGCCCATCAGTGCCGCAGACCAGGTTGGACATCT +
Preference number: 6 (lower is better)
Translates to: SGPSRAGIHSYM*AHQCRRPGWTS
Trigger: AGATGTCCAACCTGGTCTGCGGCACTGATGGGCTCACATATACGAATGAATGCCAGCTCTGCTTGGCCCGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS CAA 72 bp TTCGTATATGTGAGCCCATCAGTGCCGCAGACCAGGTaGGACATCTGGGAACAGGTTGGAGACTCTACCATG +
Preference number: 6 (lower is better)
Translates to: FVYVSPSVPQTR*DIWEQVGDSTM
Trigger: CATGGTAGAGTCTCCAACCTGTTCCCAGATGTCCAACCTGGTCTGCGGCACTGATGGGCTCACATATACGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS CAA 90 bp TGGCATTCATTCGTATATGTGAGCCCATCAGTGCCGCAGACCAGGTaGGACATCTGGGAACAGGTTGGAGACTCTACCATGTGTTCACAG +
Preference number: 6 (lower is better)
Translates to: WHSFVYVSPSVPQTR*DIWEQVGDSTMCSQ
Trigger: CTGTGAACACATGGTAGAGTCTCCAACCTGTTCCCAGATGTCCAACCTGGTCTGCGGCACTGATGGGCTCACATATACGAATGAATGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS GCA 72 bp GCTAGGGCAATAAATACCCTGGCATATCTCTCCTCCTaGCCTCACGTTCTTTCCAGTACCTCCCATTTGCAG +
Preference number: 6 (lower is better)
Translates to: ARAINTLAYLSS*PHVLSSTSHLQ
Trigger: CTGCAAATGGGAGGTACTGGAAAGAACGTGAGGGCAGGAGGAGAGATATGCCAGGGTATTTATTGCCCTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379725.5
CDS GCA 72 bp CCTCCAGAGTCCAGAGAAGGTGAGGTGAGCTCCCAATaGCCAGGATCATCAGGATGTAGACTTCTTGCTATT +
Preference number: 6 (lower is better)
Translates to: PPESREGEVSSQ*PGSSGCRLLAI
Trigger: AATAGCAAGAAGTCTACATCCTGATGATCCTGGGCATTGGGAGCTCACCTCACCTTCTCTGGACTCTGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379725.5
CDS CCA 72 bp ATGTCCTGTTTGGTTTTTATCCGGGCCAAGCAGAGCTaGCATTCATTCGTATATGTGAGCCCATCAGTGCCG +
Preference number: 6 (lower is better)
Translates to: MSCLVFIRAKQS*HSFVYVSPSVP
Trigger: CGGCACTGATGGGCTCACATATACGAATGAATGCCAGCTCTGCTTGGCCCGGATAAAAACCAAACAGGACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS CAA 90 bp CCAGCTGACACTTCATGGCTTGAGGTGCTCCTGTGGGATCAGCATTaGCCATCTTTCATGATCTGGATGTCCTGTTTGGTTTTTATCCGG +
Preference number: 6 (lower is better)
Translates to: PADTSWLEVLLWDQH*PSFMIWMSCLVFIR
Trigger: CCGGATAAAAACCAAACAGGACATCCAGATCATGAAAGATGGCAAATGCTGATCCCACAGGAGCACCTCAAGCCATGAAGTGTCAGCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS TCA 72 bp AGGTGCTCCTGTGGGATCAGCATTTGCCATCTTTCATaGTCTGGATGTCCTGTTTGGTTTTTATCCGGGCCA +
Preference number: 6 (lower is better)
Translates to: RCSCGISICHLS*SGCPVWFLSGP
Trigger: TGGCCCGGATAAAAACCAAACAGGACATCCAGATCATGAAAGATGGCAAATGCTGATCCCACAGGAGCACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS CCA 72 bp CTCCTGTGGGATCAGCATTTGCCATCTTTCATGATCTaGATGTCCTGTTTGGTTTTTATCCGGGCCAAGCAG +
Preference number: 6 (lower is better)
Translates to: LLWDQHLPSFMI*MSCLVFIRAKQ
Trigger: CTGCTTGGCCCGGATAAAAACCAAACAGGACATCCAGATCATGAAAGATGGCAAATGCTGATCCCACAGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379721.4
ENST00000379725.5
CDS CCA 72 bp GATCATCAGGATGTAGACTTCTTGCTATTCTACCTGTaGTCTGGCAGAGGGGGAGCTAGGGCAATAAATACC +
Preference number: 6 (lower is better)
Translates to: DHQDVDFLLFYL*SGRGGARAINT
Trigger: GGTATTTATTGCCCTAGCTCCCCCTCTGCCAGACCACAGGTAGAATAGCAAGAAGTCTACATCCTGATGATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000379725.5