Pregenerated sensors for SPINK13 (Homo sapiens)
Ensembl gene IDs: ENSG00000214510Ensembl transcript IDs: ENST00000398450.5, ENST00000511106.5, ENST00000512953.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCAGTGGAGGCTGACTCATCGCATAGCACATTCCAGATCATTTGGTaGTTTTGTGTGTGCGTGTGGGTGTGTGTGTGTGTGTGCCAAATT | + |
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Preference number: 5 (lower is better) Translates to: AVEADSSHSTFQIIW*FCVCVWVCVCVCQI Trigger: AATTTGGCACACACACACACACACCCACACGCACACACAAAATCACCAAATGATCTGGAATGTGCTATGCGATGAGTCAGCCTCCACTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512953.5 |
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| CDS CCA 90 bp | TCTGGAAAGTGTGGCCATTTGAGGCACAAACAGGTGCTGTCACATTaGGGCAGTCTGCATTGTAATCAGGGTCCAGTGGGATATACATTT | + |
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Preference number: 5 (lower is better) Translates to: SGKCGHLRHKQVLSH*GSLHCNQGPVGYTF Trigger: AAATGTATATCCCACTGGACCCTGATTACAATGCAGACTGCCCCAATGTGACAGCACCTGTTTGTGCCTCAAATGGCCACACTTTCCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000398450.5 ENST00000511106.5 ENST00000512953.5 |
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| CDS TCA 90 bp | CTGTTCAACACAAAAGAAACACTCATTCTGGAAAGTGTGGCCATTTaGGGCACAAACAGGTGCTGTCACATTGGGGCAGTCTGCATTGTA | + |
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Preference number: 5 (lower is better) Translates to: LFNTKETLILESVAI*GTNRCCHIGAVCIV Trigger: TACAATGCAGACTGCCCCAATGTGACAGCACCTGTTTGTGCCTCAAATGGCCACACTTTCCAGAATGAGTGTTTCTTTTGTGTTGAACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398450.5 ENST00000511106.5 ENST00000512953.5 |
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| CDS CCA 90 bp | AATTCCCTCTGTTCAACACAAAAGAAACACTCATTCTGGAAAGTGTaGCCATTTGAGGCACAAACAGGTGCTGTCACATTGGGGCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: NSLCSTQKKHSFWKV*PFEAQTGAVTLGQS Trigger: AGACTGCCCCAATGTGACAGCACCTGTTTGTGCCTCAAATGGCCACACTTTCCAGAATGAGTGTTTCTTTTGTGTTGAACAGAGGGAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398450.5 ENST00000511106.5 ENST00000512953.5 |
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| CDS CCA 72 bp | TGTGGCCATTTGAGGCACAAACAGGTGCTGTCACATTaGGGCAGTCTGCATTGTAATCAGGGTCCAGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: CGHLRHKQVLSH*GSLHCNQGPVG Trigger: TCCCACTGGACCCTGATTACAATGCAGACTGCCCCAATGTGACAGCACCTGTTTGTGCCTCAAATGGCCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000398450.5 ENST00000511106.5 ENST00000512953.5 |
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| CDS CCA 72 bp | CTGTTCCAGGAGTCTGTAGCCAAGGACGTACAGCAGTaGAGGCTGACTCATCGCATAGCACATTCCAGATCA | + |
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Preference number: 6 (lower is better) Translates to: LFQESVAKDVQQ*RLTHRIAHSRS Trigger: TGATCTGGAATGTGCTATGCGATGAGTCAGCCTCCACTGCTGTACGTCCTTGGCTACAGACTCCTGGAACAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512953.5 |
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| CDS GCA 72 bp | CGGCCCATGGCCCTTTTACTGCACCATTCTAACTTCTaGTTCCATTGTCACATCTTCTCTGACTTGGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: RPMALLLHHSNF*FHCHIFSDLGP Trigger: AGGGCCCAAGTCAGAGAAGATGTGACAATGGAAGCAGAAGTTAGAATGGTGCAGTAAAAGGGCCATGGGCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511106.5 |
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| CDS GCA 72 bp | AGGCTGTCTGAGTTCCTCGGCCCATGGCCCTTTTACTaGACCATTCTAACTTCTGCTTCCATTGTCACATCT | + |
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Preference number: 6 (lower is better) Translates to: RLSEFLGPWPFY*TILTSASIVTS Trigger: AGATGTGACAATGGAAGCAGAAGTTAGAATGGTGCAGTAAAAGGGCCATGGGCCGAGGAACTCAGACAGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511106.5 |
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| CDS CAA 72 bp | AAGGCCTGGATGAGGTGGCTGAATATGGGCCTGCTCTaGTCACTTTGGATGTCACAACTAGCCTTGAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: KAWMRWLNMGLL*SLWMSQLALRR Trigger: TCTTCTCAAGGCTAGTTGTGACATCCAAAGTGACAAGAGCAGGCCCATATTCAGCCACCTCATCCAGGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000398450.5 ENST00000512953.5 |
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| CDS TCA 72 bp | GCTGACTCATCGCATAGCACATTCCAGATCATTTGGTaGTTTTGTGTGTGCGTGTGGGTGTGTGTGTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: ADSSHSTFQIIW*FCVCVWVCVCV Trigger: CACACACACACACACCCACACGCACACACAAAATCACCAAATGATCTGGAATGTGCTATGCGATGAGTCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512953.5 |
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| CDS TCA 72 bp | ACAAAAGAAACACTCATTCTGGAAAGTGTGGCCATTTaGGGCACAAACAGGTGCTGTCACATTGGGGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: TKETLILESVAI*GTNRCCHIGAV Trigger: GACTGCCCCAATGTGACAGCACCTGTTTGTGCCTCAAATGGCCACACTTTCCAGAATGAGTGTTTCTTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398450.5 ENST00000511106.5 ENST00000512953.5 |
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