Pregenerated sensors for SPECC1-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000261033Ensembl transcript IDs: ENST00000564549.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCGGCTAGCGCCACAGGCAAGACCGGGCTCCTTGCGGGGCGGAGGTaGGGCCGTGAGCATAGCTCTCAAACTGGAGGGCGCCTCAGAATC | + |
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Preference number: 5 (lower is better) Translates to: AASATGKTGLLAGRR*GREHSSQTGGRLRI Trigger: GATTCTGAGGCGCCCTCCAGTTTGAGAGCTATGCTCACGGCCTCACCTCCGCCCCGCAAGGAGCCCGGTCTTGCCTGTGGCGCTAGCCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS TCA 90 bp | GGCCGTGAGCATAGCTCTCAAACTGGAGGGCGCCTCAGAATCACTTaGCGGGCTTGCGAGAATGTGGACTGCTGGGCCCCACCTTCATGG | + |
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Preference number: 5 (lower is better) Translates to: GREHSSQTGGRLRIT*RACENVDCWAPPSW Trigger: CCATGAAGGTGGGGCCCAGCAGTCCACATTCTCGCAAGCCCGTCAAGTGATTCTGAGGCGCCCTCCAGTTTGAGAGCTATGCTCACGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS CCA 90 bp | GTCCGGGCACCACCCTTAGAAAACCTCCAGTGTAGAGTGCGGAAATaGGGTCCACATCTGGCTTGGGACGCCCAAACATCGATTATGTGC | + |
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Preference number: 5 (lower is better) Translates to: VRAPPLENLQCRVRK*GPHLAWDAQTSIMC Trigger: GCACATAATCGATGTTTGGGCGTCCCAAGCCAGATGTGGACCCCATTTCCGCACTCTACACTGGAGGTTTTCTAAGGGTGGTGCCCGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS CCA 90 bp | GAAAACCTCCAGTGTAGAGTGCGGAAATGGGGTCCACATCTGGCTTaGGACGCCCAAACATCGATTATGTGCGACCAGAGGATGAGCAGA | + |
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Preference number: 5 (lower is better) Translates to: ENLQCRVRKWGPHLA*DAQTSIMCDQRMSR Trigger: TCTGCTCATCCTCTGGTCGCACATAATCGATGTTTGGGCGTCCCAAGCCAGATGTGGACCCCATTTCCGCACTCTACACTGGAGGTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS CAA 72 bp | CGTGTGCGGCTAGCGCCACAGGCAAGACCGGGCTCCTaGCGGGGCGGAGGTGAGGCCGTGAGCATAGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: RVRLAPQARPGS*RGGGEAVSIAL Trigger: GAGAGCTATGCTCACGGCCTCACCTCCGCCCCGCAAGGAGCCCGGTCTTGCCTGTGGCGCTAGCCGCACACG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS TCA 72 bp | GCCACAGGCAAGACCGGGCTCCTTGCGGGGCGGAGGTaGGGCCGTGAGCATAGCTCTCAAACTGGAGGGCGC | + |
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Preference number: 6 (lower is better) Translates to: ATGKTGLLAGRR*GREHSSQTGGR Trigger: GCGCCCTCCAGTTTGAGAGCTATGCTCACGGCCTCACCTCCGCCCCGCAAGGAGCCCGGTCTTGCCTGTGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS GCA 72 bp | GGGATGTTGACCTTGCCGACTTCCAGGCGCCTCCGCTaGATCCCGGAGGAGGCGTTGGGCGGTGAGGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: GMLTLPTSRRLR*IPEEALGGEGA Trigger: TGCACCCTCACCGCCCAACGCCTCCTCCGGGATGCAGCGGAGGCGCCTGGAAGTCGGCAAGGTCAACATCCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS CAA 90 bp | GGAGGAGCCGTGAGGGTAGGGAAGATGCTGAGGGGGATGTTGACCTaGCCGACTTCCAGGCGCCTCCGCTGCATCCCGGAGGAGGCGTTG | + |
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Preference number: 6 (lower is better) Translates to: GGAVRVGKMLRGMLT*PTSRRLRCIPEEAL Trigger: CAACGCCTCCTCCGGGATGCAGCGGAGGCGCCTGGAAGTCGGCAAGGTCAACATCCCCCTCAGCATCTTCCCTACCCTCACGGCTCCTCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS CAA 72 bp | GGAGCCGTGAGGGTAGGGAAGATGCTGAGGGGGATGTaGACCTTGCCGACTTCCAGGCGCCTCCGCTGCATC | + |
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Preference number: 6 (lower is better) Translates to: GAVRVGKMLRGM*TLPTSRRLRCI Trigger: GATGCAGCGGAGGCGCCTGGAAGTCGGCAAGGTCAACATCCCCCTCAGCATCTTCCCTACCCTCACGGCTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS CCA 72 bp | CAGTGTAGAGTGCGGAAATGGGGTCCACATCTGGCTTaGGACGCCCAAACATCGATTATGTGCGACCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: QCRVRKWGPHLA*DAQTSIMCDQR Trigger: CCTCTGGTCGCACATAATCGATGTTTGGGCGTCCCAAGCCAGATGTGGACCCCATTTCCGCACTCTACACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS CCA 72 bp | ACCTCCAGTGTAGAGTGCGGAAATGGGGTCCACATCTaGCTTGGGACGCCCAAACATCGATTATGTGCGACC | + |
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Preference number: 6 (lower is better) Translates to: TSSVECGNGVHI*LGTPKHRLCAT Trigger: GGTCGCACATAATCGATGTTTGGGCGTCCCAAGCCAGATGTGGACCCCATTTCCGCACTCTACACTGGAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS CCA 72 bp | CCACCCTTAGAAAACCTCCAGTGTAGAGTGCGGAAATaGGGTCCACATCTGGCTTGGGACGCCCAAACATCG | + |
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Preference number: 6 (lower is better) Translates to: PPLENLQCRVRK*GPHLAWDAQTS Trigger: CGATGTTTGGGCGTCCCAAGCCAGATGTGGACCCCATTTCCGCACTCTACACTGGAGGTTTTCTAAGGGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS GCA 72 bp | AGGAAAAACCGAATAGGCTGGGTGGGACGGAGAATCTaGATTTTCTCAAGTTCCCAGATGAGGCTGAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: RKNRIGWVGRRI*IFSSSQMRLKL Trigger: CAGCTTCAGCCTCATCTGGGAACTTGAGAAAATGCAGATTCTCCGTCCCACCCAGCCTATTCGGTTTTTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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| CDS GCA 72 bp | TTACTTCAATATGAGGAAATCAGCTGTCACCCGGTTTaGTCGTCCTTACAGACATCTCCCTCCTCTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: LLQYEEISCHPV*SSLQTSPSSSS Trigger: AGAGGAAGAGGAGGGAGATGTCTGTAAGGACGAGCAAACCGGGTGACAGCTGATTTCCTCATATTGAAGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564549.1 |
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