Pregenerated sensors for SPDYA (Homo sapiens)
Ensembl gene IDs: ENSG00000163806Ensembl transcript IDs: ENST00000334056.10, ENST00000379579.8, ENST00000439646.1, ENST00000449210.1, ENST00000462832.5, ENST00000467226.1, ENST00000491044.1
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGCTAGACCAGTACACTaGCAACCTGGTCATACAGGT | + |
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Preference number: 2 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNARPVH*QPGHTG Trigger: ACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGC...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| 3UTR-3UTR TCA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATAAACCACAACTTAACTaGGTACTCCAGATGACAGTA | + |
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Preference number: 2 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNKPQLN*VLQMTV Trigger: TACTGTCATCTGGAGTACTCAGTTAAGTTGTGGTTT...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| 3UTR-3UTR TCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGACCTGGTCATACAGGTaGGTAATGTTTTCAGAACAT | + |
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Preference number: 2 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQTWSYR*VMFSEH Trigger: ATGTTCTGAAAACATTACTCACCTGTATGACCAGGT...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| 3UTR-3UTR CCA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATCCAAATTGGTTTAGTTaGGCCATCTCATTCTTCACT | + |
|
Preference number: 2 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNPNWFS*AISFFT Trigger: AGTGAAGAATGAGATGGCCCAACTAAACCAATTTGG...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439646.1 |
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| 3UTR-3UTR TCA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATCCAGATGACAGTAACTaGCTTGAAGATGGAAAAATA | + |
|
Preference number: 2 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNPDDSN*LEDGKI Trigger: TATTTTTCCATCTTCAAGTCAGTTACTGTCATCTGG...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| 3UTR-3UTR TCA 90 bp | TATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAAAACCACAACTTAACTaGGTACTCCAGATGACAGTA | + |
|
Preference number: 2 (lower is better) Translates to: YGSFPYVARPVHWQPGHTKPQLN*VLQMTV Trigger: TACTGTCATCTGGAGTACTCAGTTAAGTTGTGGTTT...TGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| 3UTR-3UTR TCA 90 bp | TATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACACCAGATGACAGTAACTaGCTTGAAGATGGAAAAATA | + |
|
Preference number: 2 (lower is better) Translates to: YGSFPYVARPVHWQPGHTPDDSN*LEDGKI Trigger: TATTTTTCCATCTTCAAGTCAGTTACTGTCATCTGG...TGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| 3UTR-3UTR CAA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGCTTTTCTTGTCAAGTaGAGGAAGGTCAAACCACAA | + |
|
Preference number: 3 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNAFLVK*RKVKPQ Trigger: TTGTGGTTTGACCTTCCTCAACTTGACAAGAAAAGC...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| 3UTR-3UTR CAA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGCTTTTCTTGTCAAGTaGAGGAAGGTCAAACCACAA | + |
|
Preference number: 3 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQAFLVK*RKVKPQ Trigger: TTGTGGTTTGACCTTCCTCAACTTGACAAGAAAAGC...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| 3UTR-3UTR CAA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACAGCTTTTCTTGTCAAGTaGAGGAAGGTCAAACCACAA | + |
|
Preference number: 3 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTAFLVK*RKVKPQ Trigger: TTGTGGTTTGACCTTCCTCAACTTGACAAGAAAAGC...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| 3UTR-3UTR CAA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGCTTAAACATCCCATTTaGACACTTGTCTTGCAGTTA | + |
|
Preference number: 3 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQLKHPI*TLVLQL Trigger: TAACTGCAAGACAAGTGTCAAAATGGGATGTTTAAG...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| 3UTR-3UTR CAA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACACTTAAACATCCCATTTaGACACTTGTCTTGCAGTTA | + |
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Preference number: 3 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTLKHPI*TLVLQL Trigger: TAACTGCAAGACAAGTGTCAAAATGGGATGTTTAAG...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR CCA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATCCGTCGCAGCGCTCCTaGCCTCAGACGGTTGCTCGT | + |
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Preference number: 4 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNPSQRS*PQTVAR Trigger: ACGAGCAACCGTCTGAGGCCAGGAGCGCTGCGACGG...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR GCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGCTGGCCTCAGACGGTTaGTCGTCGGTCGCTAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQLASDG*SSVASQ Trigger: CTGGCTAGCGACCGACGAGCAACCGTCTGAGGCCAG...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACACCGTCGCAGCGCTCCTaGCCTCAGACGGTTGCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTPSQRS*PQTVAR Trigger: ACGAGCAACCGTCTGAGGCCAGGAGCGCTGCGACGG...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR GCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACACTGGCCTCAGACGGTTaGTCGTCGGTCGCTAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTLASDG*SSVASQ Trigger: CTGGCTAGCGACCGACGAGCAACCGTCTGAGGCCAG...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGCTAGACCAGTACACTaGCAACCTGGTCATACAGGT | + |
|
Preference number: 4 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQARPVH*QPGHTG Trigger: ACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGC...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR TCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACACAGAAATTTCCCTTCTaGAGGAAGGACTGCGGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTQKFPF*RKDCGS Trigger: GCTTCCGCAGTCCTTCCTTCAGAAGGGAAATTTCTG...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000334056.10 |
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| CDS-3UTR TCA 90 bp | TATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACATTGGTGTTCAAGGAGTaGGGTACAGATTCCCCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: YGSFPYVARPVHWQPGHTLVFKE*GTDSPS Trigger: GGAAGGGGAATCTGTACCTCACTCCTTGAACACCAA...TGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000334056.10 |
||
| CDS-3UTR CCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACAGCTAGACCAGTACACTaGCAACCTGGTCATACAGGT | + |
|
Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTARPVH*QPGHTG Trigger: ACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGC...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR TCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACAACAGATTCCCCTTCCTaGCCCTCAGAAATTTCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTTDSPS*PSEISL Trigger: AAGGGAAATTTCTGAGGGTCAGGAAGGGGAATCTGT...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000334056.10 |
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| CDS-3UTR TCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTCACCCCTGCTGTATaGCTGGATAAAGATGATGAT | + |
|
Preference number: 4 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQVTPAV*LDKDDD Trigger: ATCATCATCTTTATCCAGTCATACAGCAGGGGTGAC...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CCA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATCCAGATATAATGGGTTaGTGCAATGGCCATAACCTC | + |
|
Preference number: 4 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNPDIMG*CNGHNL Trigger: GAGGTTATGGCCATTGCACCAACCCATTATATCTGG...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CCA 90 bp | GGTTTAGTTGGGCCATCTCATTCTTCACTTCCTGTAAACCACTCCATAGATTTGGCTAGACCAGTACACTaGCAACCTGGTCATACAGGT | + |
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Preference number: 4 (lower is better) Translates to: GLVGPSHSSLPVNHSIDLARPVH*QPGHTG Trigger: ACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGC...CAAATCTATGGAGTGGTTTACAGGAAGTGAAGAATGAGATGGCCCAACTAAACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439646.1 |
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| CDS-3UTR TCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTCTCACAACACATCTaGTTGTGCCTCATTTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQVSQHI*LCLILV Trigger: AACCAAAATGAGGCACAATCAGATGTGTTGTGAGAC...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR TCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACAGTCACCCCTGCTGTATaGCTGGATAAAGATGATGAT | + |
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Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTVTPAV*LDKDDD Trigger: ATCATCATCTTTATCCAGTCATACAGCAGGGGTGAC...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR TCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGAGTTGTATGAGTCCTaGGAATGTTTTTCTGTCACC | + |
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Preference number: 4 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQELYES*ECFSVT Trigger: GGTGACAGAAAAACATTCTCAGGACTCATACAACTC...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGCCAATATTCCTTCCTTaGTGTTCAAGGAGTGAGGTA | + |
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Preference number: 4 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQPIFLP*CSRSEV Trigger: TACCTCACTCCTTGAACACCAAGGAAGGAATATTGG...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000334056.10 |
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| CDS-3UTR CCA 90 bp | TATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAAACAGTGACAGTAGGTaGTGTCTCACAACACATCTG | + |
|
Preference number: 4 (lower is better) Translates to: YGSFPYVARPVHWQPGHTNSDSR*CLTTHL Trigger: CAGATGTGTTGTGAGACACCACCTACTGTCACTGTT...TGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACACCAGATATAATGGGTTaGTGCAATGGCCATAACCTC | + |
|
Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTPDIMG*CNGHNL Trigger: GAGGTTATGGCCATTGCACCAACCCATTATATCTGG...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGATTGTGCCTCATTTTaGTTTCCCAATATTCCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQDCASF*FPNIPA Trigger: CGCAGGAATATTGGGAAACCAAAATGAGGCACAATC...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379579.8 |
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| CDS-3UTR TCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACAGTCTCACAACACATCTaGTTGTGCCTCATTTTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTVSQHI*LCLILV Trigger: AACCAAAATGAGGCACAATCAGATGTGTTGTGAGAC...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR TCA 90 bp | TATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAATGGGCTTTTTAGGCTaGTGTGATCTATTTGACCCT | + |
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Preference number: 4 (lower is better) Translates to: YGSFPYVARPVHWQPGHTMGFLG*CDLFDP Trigger: AGGGTCAAATAGATCACATCAGCCTAAAAAGCCCAT...TGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR TCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGAAACCACAACTTAACTaGGTACTCCAGATGACAGTA | + |
|
Preference number: 4 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQKPQLN*VLQMTV Trigger: TACTGTCATCTGGAGTACTCAGTTAAGTTGTGGTTT...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR TCA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATACCTGGTCATACAGGTaGGTAATGTTTTCAGAACAT | + |
|
Preference number: 4 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNTWSYR*VMFSEH Trigger: ATGTTCTGAAAACATTACTCACCTGTATGACCAGGT...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR CCA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGATTGTGCCTCATTTTaGTTTCCCAATATTCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNDCASF*FPNIPS Trigger: GGAAGGAATATTGGGAAACCAAAATGAGGCACAATC...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000334056.10 |
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| CDS-3UTR CCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACACCCCTGCTGTATGACTaGATAAAGATGATGATGAAG | + |
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Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTPLLYD*IKMMMK Trigger: CTTCATCATCATCTTTATCCAGTCATACAGCAGGGG...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CCA 90 bp | TATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACACCCCTGCTGTATGACTaGATAAAGATGATGATGAAG | + |
|
Preference number: 4 (lower is better) Translates to: YGSFPYVARPVHWQPGHTPLLYD*IKMMMK Trigger: CTTCATCATCATCTTTATCCAGTCATACAGCAGGGG...TGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGCCAAATTGGTTTAGTTaGGCCATCTCATTCTTCACT | + |
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Preference number: 4 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQPNWFS*AISFFT Trigger: AGTGAAGAATGAGATGGCCCAACTAAACCAATTTGG...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR TCA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATTTGATTGATGGTCATTaGCTACTTCAGAACCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNLIDGH*LLQNQY Trigger: ATACTGGTTCTGAAGTAGTCAATGACCATCAATCAA...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR TCA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGCCAGATGACAGTAACTaGCTTGAAGATGGAAAAATA | + |
|
Preference number: 4 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQPDDSN*LEDGKI Trigger: TATTTTTCCATCTTCAAGTCAGTTACTGTCATCTGG...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR CCA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATATTCTATCCCAGAGCTaGTCCCTTAACTTTAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNILSQS*SLNFKK Trigger: TTTCTTAAAGTTAAGGGACCAGCTCTGGGATAGAAT...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR TCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACATTGATTGATGGTCATTaGCTACTTCAGAACCAGTAT | + |
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Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTLIDGH*LLQNQY Trigger: ATACTGGTTCTGAAGTAGTCAATGACCATCAATCAA...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CCA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACAATTCTATCCCAGAGCTaGTCCCTTAACTTTAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTILSQS*SLNFKK Trigger: TTTCTTAAAGTTAAGGGACCAGCTCTGGGATAGAAT...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR CCA 90 bp | ATTCCAAATTGGTTTAGTTGGGCCATCTCATTCTTCACTTCCTGTAAACCACTCATTCTATCCCAGAGCTaGTCCCTTAACTTTAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: IPNWFSWAISFFTSCKPLILSQS*SLNFKK Trigger: TTTCTTAAAGTTAAGGGACCAGCTCTGGGATAGAAT...GAGTGGTTTACAGGAAGTGAAGAATGAGATGGCCCAACTAAACCAATTTGGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439646.1 |
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| CDS-3UTR CCA 90 bp | CCATCTCATTCTTCACTTCCTGTAAACCACTCCATAGATTTGTCTTTCTTCAAGCCAAATTGGTTTAGTTaGGCCATCTCATTCTTCACT | + |
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Preference number: 4 (lower is better) Translates to: PSHSSLPVNHSIDLSFFKPNWFS*AISFFT Trigger: AGTGAAGAATGAGATGGCCCAACTAAACCAATTTGG...CTTGAAGAAAGACAAATCTATGGAGTGGTTTACAGGAAGTGAAGAATGAGATGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439646.1 |
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| CDS CCA 90 bp | GGAGAGGGCCGGGCAACGGCGGTCAAGGCTCCGTCGCAGCGCTCCTaGCCTCAGACGGTTGCTCGTCGGTCGCTAGCCAGCAGCGGTACC | + |
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Preference number: 5 (lower is better) Translates to: GEGRATAVKAPSQRS*PQTVARRSLASSGT Trigger: GGTACCGCTGCTGGCTAGCGACCGACGAGCAACCGTCTGAGGCCAGGAGCGCTGCGACGGAGCCTTGACCGCCGTTGCCCGGCCCTCTCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000491044.1 |
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| CDS GCA 90 bp | CGAGCGAACCCAGGGACCGGGCACACTCGAAACTGGAGATTCGCCTaGGAGGCCCCTTCCCGGGGGCGAGCACAGGTACCTGCGGAAGCC | + |
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Preference number: 5 (lower is better) Translates to: RANPGTGHTRNWRFA*EAPSRGRAQVPAEA Trigger: GGCTTCCGCAGGTACCTGTGCTCGCCCCCGGGAAGGGGCCTCGCAGGCGAATCTCCAGTTTCGAGTGTGCCCGGTCCCTGGGTTCGCTCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000449210.1 |
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| CDS TCA 90 bp | AGTGAGGTACAGATTCCCCTTCCTGACCCTCAGAAATTTCCCTTCTaGAGGAAGGACTGCGCGGCCACTGCCTCCCTCGCCAGGTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: SEVQIPLPDPQKFPF*RKDCAATASLARSL Trigger: GAGGGACCTGGCGAGGGAGGCAGTGGCCGCGCAGTCCTTCCTTCAGAAGGGAAATTTCTGAGGGTCAGGAAGGGGAATCTGTACCTCACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449210.1 |
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| CDS CCA 90 bp | CCTTCTGAAGGAAGGACTTTTCTTCGGCGGATTAGCTGTTCGAGGTaGAGTGACAGGACGTCCAGAATTCAGTCCACCATACTGGTATTT | + |
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Preference number: 5 (lower is better) Translates to: PSEGRTFLRRISCSR*SDRTSRIQSTILVF Trigger: AAATACCAGTATGGTGGACTGAATTCTGGACGTCCTGTCACTCCACCTCGAACAGCTAATCCGCCGAAGAAAAGTCCTTCCTTCAGAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462832.5 |
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| CDS-3UTR CAA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATACCAGACAAGGTCCTTaGGGGCGTTTAGATTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNTRQGP*GRLDLL Trigger: CAACAAATCTAAACGCCCCAAAGGACCTTGTCTGGT...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CAA 90 bp | TATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAACCAGACAAGGTCCTTaGGGGCGTTTAGATTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: YGSFPYVARPVHWQPGHTTRQGP*GRLDLL Trigger: CAACAAATCTAAACGCCCCAAAGGACCTTGTCTGGT...TGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CAA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGAACAGAACGTTCTCTTaGCCAGATATAATGGGTTGG | + |
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Preference number: 5 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQNRTFS*PDIMGW Trigger: CCAACCCATTATATCTGGCAAAGAGAACGTTCTGTT...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CAA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATCACCTATTATGTCCATaGACAGTGAGTTGTATGAGT | + |
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Preference number: 5 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNHLLCP*TVSCMS Trigger: ACTCATACAACTCACTGTCAATGGACATAATAGGTG...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CAA 90 bp | TATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGCTTTTCTTGTCAAGTaGAGGAAGGTCAAACCACAA | + |
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Preference number: 5 (lower is better) Translates to: YGSFPYVARPVHWQPGHTAFLVK*RKVKPQ Trigger: TTGTGGTTTGACCTTCCTCAACTTGACAAGAAAAGC...TGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR CAA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGATAGCCAAAAGATACTaGTCTGCAATTTTACAGCAG | + |
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Preference number: 5 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQIAKRY*SAILQQ Trigger: CTGCTGTAAAATTGCAGACAAGTATCTTTTGGCTAT...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CAA 90 bp | TATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACACACCTATTATGTCCATaGACAGTGAGTTGTATGAGT | + |
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Preference number: 5 (lower is better) Translates to: YGSFPYVARPVHWQPGHTHLLCP*TVSCMS Trigger: ACTCATACAACTCACTGTCAATGGACATAATAGGTG...TGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CAA 90 bp | ATGGATCATTTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGAGAACCAGTATAAGCTaGAGAAGGATCACCTATTAT | + |
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Preference number: 5 (lower is better) Translates to: MDHFPMLLDQYTGNLVIQRTSIS*RRITYY Trigger: ATAATAGGTGATCCTTCTCAAGCTTATACTGGTTCT...CTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAAATGATCCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CAA 90 bp | TTCCCTATGTTGCTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATCTTAAACATCCCATTTaGACACTTGTCTTGCAGTTA | + |
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Preference number: 5 (lower is better) Translates to: FPMLLDQYTGNLVIQVSNLKHPI*TLVLQL Trigger: TAACTGCAAGACAAGTGTCAAAATGGGATGTTTAAG...ATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAGCAACATAGGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000439646.1 |
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| CDS-3UTR CAA 90 bp | CTAGACCAGTACACTGGCAACCTGGTCATACAGGTGAGTAATGTTTTCAGAACAATAGCCAAAAGATACTaGTCTGCAATTTTACAGCAG | + |
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Preference number: 5 (lower is better) Translates to: LDQYTGNLVIQVSNVFRTIAKRY*SAILQQ Trigger: CTGCTGTAAAATTGCAGACAAGTATCTTTTGGCTAT...TGTTCTGAAAACATTACTCACCTGTATGACCAGGTTGCCAGTGTACTGGTCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000334056.10 ENST00000379579.8 |
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| CDS-3UTR CAA 90 bp | ATTCCAAATTGGTTTAGTTGGGCCATCTCATTCTTCACTTCCTGTAAACCACTCCTTAAACATCCCATTTaGACACTTGTCTTGCAGTTA | + |
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Preference number: 5 (lower is better) Translates to: IPNWFSWAISFFTSCKPLLKHPI*TLVLQL Trigger: TAACTGCAAGACAAGTGTCAAAATGGGATGTTTAAG...GAGTGGTTTACAGGAAGTGAAGAATGAGATGGCCCAACTAAACCAATTTGGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439646.1 |
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| CDS CCA 72 bp | CGGGCAACGGCGGTCAAGGCTCCGTCGCAGCGCTCCTaGCCTCAGACGGTTGCTCGTCGGTCGCTAGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: RATAVKAPSQRS*PQTVARRSLAS Trigger: GCTGGCTAGCGACCGACGAGCAACCGTCTGAGGCCAGGAGCGCTGCGACGGAGCCTTGACCGCCGTTGCCCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000491044.1 |
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| CDS CCA 72 bp | CGGCGAGCGAACCCAGGGACCGGGCACACTCGAAACTaGAGATTCGCCTGCGAGGCCCCTTCCCGGGGGCGA | + |
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Preference number: 6 (lower is better) Translates to: RRANPGTGHTRN*RFACEAPSRGR Trigger: TCGCCCCCGGGAAGGGGCCTCGCAGGCGAATCTCCAGTTTCGAGTGTGCCCGGTCCCTGGGTTCGCTCGCCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000449210.1 |
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| CDS GCA 72 bp | TTCCCTTCTGAAGGAAGGACTGCGGAAGCCCGGGGCTaGGCGGGAGAGGGCCGGGCAACGGCGGTCAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: FPSEGRTAEARG*AGEGRATAVKA Trigger: AGCCTTGACCGCCGTTGCCCGGCCCTCTCCCGCGCAGCCCCGGGCTTCCGCAGTCCTTCCTTCAGAAGGGAA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000334056.10 |
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| CDS GCA 72 bp | CCAGGGACCGGGCACACTCGAAACTGGAGATTCGCCTaGGAGGCCCCTTCCCGGGGGCGAGCACAGGTACCT | + |
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Preference number: 6 (lower is better) Translates to: PGTGHTRNWRFA*EAPSRGRAQVP Trigger: AGGTACCTGTGCTCGCCCCCGGGAAGGGGCCTCGCAGGCGAATCTCCAGTTTCGAGTGTGCCCGGTCCCTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000449210.1 |
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| CDS GCA 72 bp | TTTTGGTTTCCCAATATTCCTGCGGAAGCCCGGGGCTaGGCGGGAGAGGGCCGGGCAACGGCGGTCAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: FWFPNIPAEARG*AGEGRATAVKA Trigger: AGCCTTGACCGCCGTTGCCCGGCCCTCTCCCGCGCAGCCCCGGGCTTCCGCAGGAATATTGGGAAACCAAAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379579.8 |
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| CDS CCA 72 bp | GTGGTGTCTCACAACACATCTGATTGTGCCTCATTTTaGTTTCCCAATATTCCTGCGGAAGCCCGGGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: VVSHNTSDCASF*FPNIPAEARGC Trigger: GCAGCCCCGGGCTTCCGCAGGAATATTGGGAAACCAAAATGAGGCACAATCAGATGTGTTGTGAGACACCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379579.8 |
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| CDS CCA 72 bp | GGAAGGACTTTTCTTCGGCGGATTAGCTGTTCGAGGTaGAGTGACAGGACGTCCAGAATTCAGTCCACCATA | + |
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Preference number: 6 (lower is better) Translates to: GRTFLRRISCSR*SDRTSRIQSTI Trigger: TATGGTGGACTGAATTCTGGACGTCCTGTCACTCCACCTCGAACAGCTAATCCGCCGAAGAAAAGTCCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462832.5 |
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| CDS GCA 72 bp | GTAAAGGAAACACCACGATCATTTTCTCCCCAGCCTTaGACATCCTTATCTGGATCAGACCATAGCAAATCA | + |
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Preference number: 6 (lower is better) Translates to: VKETPRSFSPQP*TSLSGSDHSKS Trigger: TGATTTGCTATGGTCTGATCCAGATAAGGATGTGCAAGGCTGGGGAGAAAATGATCGTGGTGTTTCCTTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462832.5 |
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| CDS CCA 72 bp | GTGGTGTCTCACAACACATCTGATTGTGCCTCATTTTaGTTTCCCAATATTCCTTCCTTGGTGTTCAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: VVSHNTSDCASF*FPNIPSLVFKE Trigger: CTCCTTGAACACCAAGGAAGGAATATTGGGAAACCAAAATGAGGCACAATCAGATGTGTTGTGAGACACCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000334056.10 ENST00000449210.1 ENST00000462832.5 |
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| CDS CAA 90 bp | CTTCAGAACCAGTATAAGCTTGAGAAGGATCACCTATTATGTCCATaGACAGTGAGTTGTATGAGTCCTGAGAATGTTTTTCTGTCACCC | + |
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Preference number: 6 (lower is better) Translates to: LQNQYKLEKDHLLCP*TVSCMSPENVFLSP Trigger: GGGTGACAGAAAAACATTCTCAGGACTCATACAACTCACTGTCAATGGACATAATAGGTGATCCTTCTCAAGCTTATACTGGTTCTGAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000334056.10 ENST00000379579.8 ENST00000462832.5 ENST00000467226.1 ENST00000491044.1 |
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