Pregenerated sensors for SPATA48 (Homo sapiens)

Ensembl gene IDs: ENSG00000164500

Ensembl transcript IDs: ENST00000297001.7

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CAGAGGGCTTGTCCAACCTCCAAGTCTTGCTCTGATAGAAATGTCTaGTACTTCCCTGGAATTCCATCTCCTGTTCTGTTGCAGTTCTTC	+
Preference number: 5 (lower is better) Translates to: QRACPTSKSCSDRNV*YFPGIPSPVLLQFF Trigger: GAAGAACTGCAACAGAACAGGAGATGGAATTCCAGGGAAGTACCAGACATTTCTATCAGAGCAAGACTTGGAGGTTGGACAAGCCCTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000297001.7
CDS TCA 90 bp	GTTGTTGATGGAATATTAGAATTTGCTGGGTGGGTGGCTGTGAAATaGACCTTGCCGGTATATCCTGGAATATTTGCAGCACGACTTGTG	+
Preference number: 5 (lower is better) Translates to: VVDGILEFAGWVAVK*TLPVYPGIFAARLV Trigger: CACAAGTCGTGCTGCAAATATTCCAGGATATACCGGCAAGGTTCATTTCACAGCCACCCACCCAGCAAATTCTAATATTCCATCAACAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000297001.7
CDS CCA 72 bp	TCCCACCGCCGCACAAGCCTTCCCCAGGCGGAGGCCTaGACAGCCCGCGCAGGGCCGCCTCCTCTAGTAGTC	+
Preference number: 6 (lower is better) Translates to: SHRRTSLPQAEA*TARAGPPPLVV Trigger: GACTACTAGAGGAGGCGGCCCTGCGCGGGCTGTCCAGGCCTCCGCCTGGGGAAGGCTTGTGCGGCGGTGGGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297001.7
CDS TCA 72 bp	CTCACAGTTGTGACCAGTCGAGACAGGGGAGCCTGGTaGCGGAAGAGGTCAACTGCCATTTCTTTCTGGAAG	+
Preference number: 6 (lower is better) Translates to: LTVVTSRDRGAW*RKRSTAISFWK Trigger: CTTCCAGAAAGAAATGGCAGTTGACCTCTTCCGTCACCAGGCTCCCCTGTCTCGACTGGTCACAACTGTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297001.7
CDS CCA 72 bp	TGTCCAACCTCCAAGTCTTGCTCTGATAGAAATGTCTaGTACTTCCCTGGAATTCCATCTCCTGTTCTGTTG	+
Preference number: 6 (lower is better) Translates to: CPTSKSCSDRNV*YFPGIPSPVLL Trigger: CAACAGAACAGGAGATGGAATTCCAGGGAAGTACCAGACATTTCTATCAGAGCAAGACTTGGAGGTTGGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000297001.7
CDS TCA 72 bp	GGAATATTAGAATTTGCTGGGTGGGTGGCTGTGAAATaGACCTTGCCGGTATATCCTGGAATATTTGCAGCA	+
Preference number: 6 (lower is better) Translates to: GILEFAGWVAVK*TLPVYPGIFAA Trigger: TGCTGCAAATATTCCAGGATATACCGGCAAGGTTCATTTCACAGCCACCCACCCAGCAAATTCTAATATTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000297001.7
CDS CAA 72 bp	ATTAATTGGTTTGACTGGTGCCAAGAAAGATCTTGTTaGAAATCTGTCCCAGAGCTCACCAACCATCTGAGT	+
Preference number: 6 (lower is better) Translates to: INWFDWCQERSC*KSVPELTNHLS Trigger: ACTCAGATGGTTGGTGAGCTCTGGGACAGATTTCAAACAAGATCTTTCTTGGCACCAGTCAAACCAATTAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000297001.7
CDS CAA 90 bp	ACTCACAAAATTAATTGGTTTGACTGGTGCCAAGAAAGATCTTGTTaGAAATCTGTCCCAGAGCTCACCAACCATCTGAGTTATTGCTGG	+
Preference number: 6 (lower is better) Translates to: THKINWFDWCQERSC*KSVPELTNHLSYCW Trigger: CCAGCAATAACTCAGATGGTTGGTGAGCTCTGGGACAGATTTCAAACAAGATCTTTCTTGGCACCAGTCAAACCAATTAATTTTGTGAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297001.7

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