Pregenerated sensors for SPATA42 (Homo sapiens)

Ensembl gene IDs: ENSG00000203897

Ensembl transcript IDs: ENST00000369989.2, ENST00000417241.1, ENST00000662170.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 72 bp	TCCAACAGCCGGAAACAACAATTCGCTGACCATCTTTaGCCTCTTGCCACTAAGGAGTTTTGGTTTTCCCAT	+
Preference number: 6 (lower is better) Translates to: SNSRKQQFADHL*PLATKEFWFSH Trigger: ATGGGAAAACCAAAACTCCTTAGTGGCAAGAGGCCAAAGATGGTCAGCGAATTGTTGTTTCCGGCTGTTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000369989.2 ENST00000417241.1 ENST00000662170.1
CDS CAA 72 bp	GCCGGAAACAACAATTCGCTGACCATCTTTGGCCTCTaGCCACTAAGGAGTTTTGGTTTTCCCATCTGTAGA	+
Preference number: 6 (lower is better) Translates to: AGNNNSLTIFGL*PLRSFGFPICR Trigger: TCTACAGATGGGAAAACCAAAACTCCTTAGTGGCAAGAGGCCAAAGATGGTCAGCGAATTGTTGTTTCCGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000369989.2 ENST00000417241.1 ENST00000662170.1
CDS CAA 90 bp	AGAACCCAGAAGAAGCAGGCACGCCATGATTTTGAAGCTCCGTTTTaGTTCTGTTATTCAACTGCAGTCAACTTCCAACAGCCGGAAACA	+
Preference number: 6 (lower is better) Translates to: RTQKKQARHDFEAPF*FCYSTAVNFQQPET Trigger: TGTTTCCGGCTGTTGGAAGTTGACTGCAGTTGAATAACAGAACAAAAACGGAGCTTCAAAATCATGGCGTGCCTGCTTCTTCTGGGTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000369989.2 ENST00000417241.1 ENST00000662170.1
CDS CAA 90 bp	TGCTTGCAGTTAAAAGAACCCAGAAGAAGCAGGCACGCCATGATTTaGAAGCTCCGTTTTTGTTCTGTTATTCAACTGCAGTCAACTTCC	+
Preference number: 6 (lower is better) Translates to: CLQLKEPRRSRHAMI*KLRFCSVIQLQSTS Trigger: GGAAGTTGACTGCAGTTGAATAACAGAACAAAAACGGAGCTTCAAAATCATGGCGTGCCTGCTTCTTCTGGGTTCTTTTAACTGCAAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000369989.2 ENST00000417241.1 ENST00000662170.1
CDS CAA 72 bp	AAGAAGCAGGCACGCCATGATTTTGAAGCTCCGTTTTaGTTCTGTTATTCAACTGCAGTCAACTTCCAACAG	+
Preference number: 6 (lower is better) Translates to: KKQARHDFEAPF*FCYSTAVNFQQ Trigger: CTGTTGGAAGTTGACTGCAGTTGAATAACAGAACAAAAACGGAGCTTCAAAATCATGGCGTGCCTGCTTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000369989.2 ENST00000417241.1 ENST00000662170.1
CDS CAA 72 bp	TTAAAAGAACCCAGAAGAAGCAGGCACGCCATGATTTaGAAGCTCCGTTTTTGTTCTGTTATTCAACTGCAG	+
Preference number: 6 (lower is better) Translates to: LKEPRRSRHAMI*KLRFCSVIQLQ Trigger: CTGCAGTTGAATAACAGAACAAAAACGGAGCTTCAAAATCATGGCGTGCCTGCTTCTTCTGGGTTCTTTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000369989.2 ENST00000417241.1 ENST00000662170.1
CDS CAA 90 bp	TCATATGTAAATGTTATTCTTGAGGTGCTCTTCAAAGCTGATTGCTaGCAGTTAAAAGAACCCAGAAGAAGCAGGCACGCCATGATTTTG	+
Preference number: 6 (lower is better) Translates to: SYVNVILEVLFKADC*QLKEPRRSRHAMIL Trigger: CAAAATCATGGCGTGCCTGCTTCTTCTGGGTTCTTTTAACTGCAAGCAATCAGCTTTGAAGAGCACCTCAAGAATAACATTTACATATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000369989.2

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