Pregenerated sensors for SPATA31E1 (Homo sapiens)
Ensembl gene IDs: ENSG00000177992Ensembl transcript IDs: ENST00000325643.6
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 72 bp | GGAGTGAAATGTTGGGGCTGGGCCATGTGGTGGGGCTaGGGCGGTGCCTGGGAAAGCTGTGAGGATGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: GVKCWGWAMWWG*GGAWESCEDAS Trigger: TGAGGCATCCTCACAGCTTTCCCAGGCACCGCCCCAGCCCCACCACATGGCCCAGCCCCAACATTTCACTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000325643.6 |
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| CDS TCA 72 bp | AAGTGGTTCCCCACGGTTGTGGCATCAGAGACTTGCTaGGGACGGGGCAGCTGCTGTGGCTGGGTTGACACG | + |
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Preference number: 6 (lower is better) Translates to: KWFPTVVASETC*GRGSCCGWVDT Trigger: CGTGTCAACCCAGCCACAGCAGCTGCCCCGTCCTCAGCAAGTCTCTGATGCCACAACCGTGGGGAACCACTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000325643.6 |
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| CDS CCA 72 bp | GGCTGCGTTTCTGCTGTAAGTGGTTCCCCACGGTTGTaGCATCAGAGACTTGCTGAGGACGGGGCAGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: GCVSAVSGSPRL*HQRLAEDGAAA Trigger: AGCAGCTGCCCCGTCCTCAGCAAGTCTCTGATGCCACAACCGTGGGGAACCACTTACAGCAGAAACGCAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000325643.6 |
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| CDS CAA 72 bp | GCTGGCTGCGTTTCTGCTGTAAGTGGTTCCCCACGGTaGTGGCATCAGAGACTTGCTGAGGACGGGGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: AGCVSAVSGSPR*WHQRLAEDGAA Trigger: AGCTGCCCCGTCCTCAGCAAGTCTCTGATGCCACAACCGTGGGGAACCACTTACAGCAGAAACGCAGCCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000325643.6 |
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| CDS CAA 72 bp | AGGATTTGTCCCACAACTCTGCTGATGGTCCAGGCTTaGTCAGCCATGCAGTCCATAAACTGCCTTGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: RICPTTLLMVQA*SAMQSINCLGG Trigger: CCCACCAAGGCAGTTTATGGACTGCATGGCTGACAAAGCCTGGACCATCAGCAGAGTTGTGGGACAAATCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325643.6 |
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