Pregenerated sensors for SPATA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000122432Ensembl transcript IDs: ENST00000460286.1, ENST00000468437.1, ENST00000473108.1, ENST00000484939.1, ENST00000485121.5, ENST00000490879.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCACTTCCCTGCACATTTTaGCCCTGTAAATTGGAATAC | + |
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Preference number: 2 (lower is better) Translates to: RHELHCAFNDLKTLISFSLPCTF*PCKLEY Trigger: GTATTCCAATTTACAGGGGCAAAATGTGCAGGGAAG...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTAAATCCTGGCTTCCCTaGACATTTTGCCCCTGTAAA | + |
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Preference number: 2 (lower is better) Translates to: LHCAFNDLKTLISFSTSSKSWLP*TFCPCK Trigger: TTTACAGGGGCAAAATGTGCAGGGAAGCCAGGATTT...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCATTTGTAATACCCACATaGAAAGTGGAGAAAGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: RHELHCAFNDLKTLISFSFVIPT*KVEKEK Trigger: TTTCTCTTTCTCCACTTTCCATGTGGGTATTACAAA...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| 3UTR-3UTR CCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTGATTTACATAAATCCTaGCTTCCCTGCACATTTTGC | + |
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Preference number: 2 (lower is better) Translates to: LHCAFNDLKTLISFSTSSDLHKS*LPCTFC Trigger: GCAAAATGTGCAGGGAAGCCAGGATTTATGTAAATC...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTTATCATAGCTCAGAATaGAACTTCAATACCCCCATT | + |
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Preference number: 2 (lower is better) Translates to: LHCAFNDLKTLISFSTSSYHSSE*NFNTPI Trigger: AATGGGGGTATTGAAGTTGCATTCTGAGCTATGATA...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCATGGGTCTCCAACTCCTaGGCTCAAGCACTCCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSWVSNS*AQALLL Trigger: CAGGAGGAGTGCTTGAGCCCAGGAGTTGGAGACCCA...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR GCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAAGCTGGTCAATTGCATaGTGTACCTCAGTGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSSWSIA*CTSVIW Trigger: CCAGATCACTGAGGTACAGCATGCAATTGACCAGCT...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTCAAGGAAGTGAAGGGTaGTCTGGTAGGGTGATGTAC | + |
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Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSQGSEG*SGRVMY Trigger: GTACATCACCCTACCAGATCACCCTTCACTTCCTTG...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTGGTGATCTGGTAGGGTaGTGTACTCTTTTTCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSGDLVG*CTLFQL Trigger: CAGCTGAAAAAGAGTACATCACCCTACCAGATCACC...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCACCTCCATTGATGCTGTaGCTTTCTTTGTTTCCAAGT | + |
|
Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSPPLML*LSLFPS Trigger: ACTTGGAAACAAAGAAAGTCACAGCATCAATGGAGG...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR GCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAGGAGTCTGTGATGTTTaGCAGATTCTTTGGTCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSGVCDV*QILWSH Trigger: ATGAGACCAAAGAATCTGGCAAACATCACAGACTCC...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAGTTTGCCAGATTCTTTaGTCTCATCTTGATCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSVCQIL*SHLDLP Trigger: AGGGAGATCAAGATGAGACCAAAGAATCTGGCAAAC...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTTCTTTGGTCTCATCTTaGTCTCCCTGGCTTCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSSLVSS*SPWLQV Trigger: AACTTGAAGCCAGGGAGATCAAGATGAGACCAAAGA...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAAAGGTCGACTTGGATTaGGTGACATATTCACTAATG | + |
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Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSKVDLD*VTYSLM Trigger: CATTAGTGAATATGTCACTCAATCCAAGTCGACCTT...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCACATGCTGTACCTCAGTaGTCTGGATTATTAGGTAAT | + |
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Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSHAVPQ*SGLLGN Trigger: ATTACCTAATAATCCAGATCACTGAGGTACAGCATG...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAAGTTTTCTCTTAAGCTaGTCAATTGCATGCTGTACC | + |
|
Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSSFLLS*SIACCT Trigger: GGTACAGCATGCAATTGACCAGCTTAAGAGAAAACT...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAGATTTACATAAATCCTaGCTTCCCTGCACATTTTGC | + |
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Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSDLHKS*LPCTFC Trigger: GCAAAATGTGCAGGGAAGCCAGGATTTATGTAAATC...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAGCTCGTAAAGTAAGTTaGGGAGATACTCTTAGAAAT | + |
|
Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSARKVS*GDTLRN Trigger: ATTTCTAAGAGTATCTCCTCAACTTACTTTACGAGC...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR GCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTCTTAAGCTGGTCAATTaGATGCTGTACCTCAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSLKLVN*MLYLSD Trigger: ATCACTGAGGTACAGCATGCAATTGACCAGCTTAAG...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTACACTAATTGGTCTGTaGATTGTTCCATCAGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSTLIGL*IVPSAS Trigger: TGAGGCTGATGGAACAATCCACAGACCAATTAGTGT...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTAATTCTTGGAGTCTGTaGTGTTTGCCAGATTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSNSWSL*CLPDSL Trigger: CAAAGAATCTGGCAAACATCACAGACTCCAAGAATT...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR GCA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACACCATTATTAGTCTaGCGCTCATCTAAAATAACT | + |
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Preference number: 4 (lower is better) Translates to: RHELHCAFNDLKTLISFSTPLLV*RSSKIT Trigger: AGTTATTTTAGATGAGCGGCAGACTAATAATGGTGT...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTGAGGAGCAAATGATTTaGGTTTCAGTTCTGATTCTT | + |
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Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSEEQMI*VSVLIL Trigger: AAGAATCAGAACTGAAACTCAAATCATTTGCTCCTC...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTAAATATAATTCTGGTTaGAGAGCATATGGAGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSKYNSG*RAYGGA Trigger: TGCTCCTCCATATGCTCTTCAACCAGAATTATATTT...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR TCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTTCTTTGGACAGTGAGTaGGAATTAAAAAGAATCCAG | + |
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Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSSLDSE*ELKRIQ Trigger: CTGGATTCTTTTTAATTCTCACTCACTGTCCAAAGA...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTCAAAGTTACACTAATTaGTCTGTGGATTGTTCCATC | + |
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Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSQSYTN*SVDCSI Trigger: GATGGAACAATCCACAGACCAATTAGTGTAACTTTG...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CCA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTTGTTTTCTAACAAACTaGGATCTCTTCCAAGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LHCAFNDLKTLISFSTSSCFLTN*DLFQVP Trigger: AGGAACTTGGAAGAGATCCCAGTTTGTTAGAAAACA...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS GCA 90 bp | AAGTCAAACCTCGAGAAGATCCCTTCTCCAGCGAATCAGCGCCCCTaGTCCCCGCCCGCCCGGCTCCGCTGGGTACGCGACAGCGACCTC | + |
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Preference number: 5 (lower is better) Translates to: KSNLEKIPSPANQRP*SPPARLRWVRDSDL Trigger: GAGGTCGCTGTCGCGTACCCAGCGGAGCCGGGCGGGCGGGGAGCAGGGGCGCTGATTCGCTGGAGAAGGGATCTTCTCGAGGTTTGACTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000468437.1 |
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| CDS CCA 90 bp | TGCTTGTTTTCTCATCTTGGAGTCTGTGATGTTTGCCAGATTCTTTaGTCTCATCTTGATCTCCCTGGCTTCAAGTTGCATGAGCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: CLFSHLGVCDVCQIL*SHLDLPGFKLHEQF Trigger: AAACTGCTCATGCAACTTGAAGCCAGGGAGATCAAGATGAGACCAAAGAATCTGGCAAACATCACAGACTCCAAGATGAGAAAACAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000460286.1 |
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| CDS TCA 90 bp | GACATAACACACATATTTCCGTGGATGAAAGAAAGACCTACTGGCTaGGCCTATTTTGTTTGGTTAGACCCTACCCTCTCTCCTAAAAAC | + |
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Preference number: 5 (lower is better) Translates to: DITHIFPWMKERPTG*AYFVWLDPTLSPKN Trigger: GTTTTTAGGAGAGAGGGTAGGGTCTAACCAAACAAAATAGGCTCAGCCAGTAGGTCTTTCTTTCATCCACGGAAATATGTGTGTTATGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000484939.1 |
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| CDS CCA 90 bp | TCTCTTCCAAGTTCCTCCTTGAACAAAGTTACACTAATTGGTCTGTaGATTGTTCCATCAGCCTCATTAACACCATTATTAGTCTGCCGC | + |
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Preference number: 5 (lower is better) Translates to: SLPSSSLNKVTLIGL*IVPSASLTPLLVCR Trigger: GCGGCAGACTAATAATGGTGTTAATGAGGCTGATGGAACAATCCACAGACCAATTAGTGTAACTTTGTTCAAGGAGGAACTTGGAAGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000473108.1 ENST00000485121.5 ENST00000490879.8 |
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| CDS TCA 90 bp | ATTGACTACCCGAAAAGAAATAGGAAACATCTGCCCTTAGTGCTGTaGCATAACACACATATTTCCGTGGATGAAAGAAAGACCTACTGG | + |
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Preference number: 5 (lower is better) Translates to: IDYPKRNRKHLPLVL*HNTHISVDERKTYW Trigger: CCAGTAGGTCTTTCTTTCATCCACGGAAATATGTGTGTTATGTCACAGCACTAAGGGCAGATGTTTCCTATTTCTTTTCGGGTAGTCAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000484939.1 |
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| CDS-3UTR CAA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCATTCTTTGGTCTCATCTaGATCTCCCTGGCTTCAAGT | + |
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Preference number: 5 (lower is better) Translates to: RHELHCAFNDLKTLISFSFFGLI*ISLASS Trigger: ACTTGAAGCCAGGGAGATCAAGATGAGACCAAAGAA...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS CCA 90 bp | ACTGGGATCTCTTCCAAGTTCCTCCTTGAACAAAGTTACACTAATTaGTCTGTGGATTGTTCCATCAGCCTCATTAACACCATTATTAGT | + |
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Preference number: 5 (lower is better) Translates to: TGISSKFLLEQSYTN*SVDCSISLINTIIS Trigger: ACTAATAATGGTGTTAATGAGGCTGATGGAACAATCCACAGACCAATTAGTGTAACTTTGTTCAAGGAGGAACTTGGAAGAGATCCCAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000473108.1 ENST00000485121.5 ENST00000490879.8 |
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| CDS GCA 90 bp | GTAACCTTTGATGTAGCTTGGTCTCCAAAGAACATAGACAGAAGATaGTATAATTATACTGGAATCGCAGATGCTTGTGACTTCCTCTTT | + |
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Preference number: 5 (lower is better) Translates to: VTFDVAWSPKNIDRR*YNYTGIADACDFLF Trigger: AAAGAGGAAGTCACAAGCATCTGCGATTCCAGTATAATTATAGCATCTTCTGTCTATGTTCTTTGGAGACCAAGCTACATCAAAGGTTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460286.1 |
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| CDS TCA 90 bp | GCTATAATTATACTGGAATCGCAGATGCTTGTGACTTCCTCTTTGTaGTGTCTTATGATGAACAAAGTCAGATCTGGTCAGAATGTATTG | + |
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Preference number: 5 (lower is better) Translates to: AIIILESQMLVTSSL*CLMMNKVRSGQNVL Trigger: CAATACATTCTGACCAGATCTGACTTTGTTCATCATAAGACATCACAAAGAGGAAGTCACAAGCATCTGCGATTCCAGTATAATTATAGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460286.1 |
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| CDS TCA 90 bp | AAACATGAAGTTCCACCAACTCTGATGAGGAAGGTCGACTTGGATTaGGTGACATATTCACTAATGTCTGAATGGGATAATTATCAATTG | + |
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Preference number: 5 (lower is better) Translates to: KHEVPPTLMRKVDLD*VTYSLMSEWDNYQL Trigger: CAATTGATAATTATCCCATTCAGACATTAGTGAATATGTCACTCAATCCAAGTCGACCTTCCTCATCAGAGTTGGTGGAACTTCATGTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CAA 90 bp | AGGCATGAGCTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAAATCTTCTCGAAGTTTaGTTAAAACCTCCTCCATTG | + |
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Preference number: 5 (lower is better) Translates to: RHELHCAFNDLKTLISFSNLLEV*LKPPPL Trigger: CAATGGAGGAGGTTTTAACAAAACTTCGAGAAGATT...TGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAGCTCATGCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CAA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTGGAGGAGCAAATGATTaGAGTTTCAGTTCTGATTCT | + |
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Preference number: 5 (lower is better) Translates to: LHCAFNDLKTLISFSTSSGGAND*SFSSDS Trigger: AGAATCAGAACTGAAACTCAAATCATTTGCTCCTCC...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CAA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTCTTCCAAGTTCCTCCTaGAACAAAGTTACACTAATT | + |
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Preference number: 5 (lower is better) Translates to: LHCAFNDLKTLISFSTSSLPSSS*NKVTLI Trigger: AATTAGTGTAACTTTGTTCAAGGAGGAACTTGGAAG...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS-3UTR CAA 90 bp | CTGCATTGTGCTTTTAATGATCTAAAGACACTGATTAGCTTCTCAACTAGTTCTAGGAATAACTTGCAGTaGAACTTGATTCTGTTCACT | + |
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Preference number: 5 (lower is better) Translates to: LHCAFNDLKTLISFSTSSRNNLQ*NLILFT Trigger: AGTGAACAGAATCAAGTTCAACTGCAAGTTATTCCT...AGAACTAGTTGAGAAGCTAATCAGTGTCTTTAGATCATTAAAAGCACAATGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS GCA 72 bp | CGGCTCCGCTGGGTACGCGACAGCGACCTCCGCGCCTaGTCTCCGCCTCGGGTCAGCGGGGCTGGGGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: RLRWVRDSDLRA*SPPRVSGAGGW Trigger: CCAACCCCCAGCCCCGCTGACCCGAGGCGGAGAGCAGGCGCGGAGGTCGCTGTCGCGTACCCAGCGGAGCCG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000468437.1 |
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| CDS CCA 72 bp | AACCGAGCAGACAGGTGTAATCTTCAGCCAGCACCTTaGCTTCTTCACAATCTCCTCTCCCTAATCGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: NRADRCNLQPAP*LLHNLLSLIGP Trigger: GGGGCCGATTAGGGAGAGGAGATTGTGAAGAAGCCAAGGTGCTGGCTGAAGATTACACCTGTCTGCTCGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000484939.1 |
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| CDS CCA 72 bp | GTTCCACCAACTCACTCCCCACCTACTCAGTTCCATTaGGGTGATCCCCTGTGGAATCTTTATCCTTTGTAT | + |
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Preference number: 6 (lower is better) Translates to: VPPTHSPPTQFH*GDPLWNLYPLY Trigger: ATACAAAGGATAAAGATTCCACAGGGGATCACCCCAATGGAACTGAGTAGGTGGGGAGTGAGTTGGTGGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000485121.5 |
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| CDS CCA 72 bp | AACCGAGCAGACAGGTGTAATCTTCAGCCAGCACCTTaGCTTCTTCACAATCTCCTTCAGAAAAACCGATTC | + |
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Preference number: 6 (lower is better) Translates to: NRADRCNLQPAP*LLHNLLQKNRF Trigger: GAATCGGTTTTTCTGAAGGAGATTGTGAAGAAGCCAAGGTGCTGGCTGAAGATTACACCTGTCTGCTCGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000468437.1 |
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| CDS TCA 72 bp | CACATATTTCCGTGGATGAAAGAAAGACCTACTGGCTaGGCCTATTTTGTTTGGTTAGACCCTACCCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: HIFPWMKERPTG*AYFVWLDPTLS Trigger: AGAGAGGGTAGGGTCTAACCAAACAAAATAGGCTCAGCCAGTAGGTCTTTCTTTCATCCACGGAAATATGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000484939.1 |
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| CDS CCA 72 bp | TCTCATCTTGGAGTCTGTGATGTTTGCCAGATTCTTTaGTCTCATCTTGATCTCCCTGGCTTCAAGTTGCAT | + |
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Preference number: 6 (lower is better) Translates to: SHLGVCDVCQIL*SHLDLPGFKLH Trigger: ATGCAACTTGAAGCCAGGGAGATCAAGATGAGACCAAAGAATCTGGCAAACATCACAGACTCCAAGATGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460286.1 |
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| CDS CAA 72 bp | GAGTCTGTGATGTTTGCCAGATTCTTTGGTCTCATCTaGATCTCCCTGGCTTCAAGTTGCATGAGCAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: ESVMFARFFGLI*ISLASSCMSSF Trigger: AAAACTGCTCATGCAACTTGAAGCCAGGGAGATCAAGATGAGACCAAAGAATCTGGCAAACATCACAGACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000460286.1 ENST00000490879.8 |
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| CDS CCA 72 bp | AACACACATATTTCCGTGGATGAAAGAAAGACCTACTaGCTGAGCCTATTTTGTTTGGTTAGACCCTACCCT | + |
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Preference number: 6 (lower is better) Translates to: NTHISVDERKTY*LSLFCLVRPYP Trigger: AGGGTAGGGTCTAACCAAACAAAATAGGCTCAGCCAGTAGGTCTTTCTTTCATCCACGGAAATATGTGTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000484939.1 |
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| CDS CCA 72 bp | GTAATTCTTGGAGTCTGTGATGTTTGCCAGATTCTTTaGTCTCATCTTGATCTCCCTGGCTTCAAGTTGCAT | + |
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Preference number: 6 (lower is better) Translates to: VILGVCDVCQIL*SHLDLPGFKLH Trigger: ATGCAACTTGAAGCCAGGGAGATCAAGATGAGACCAAAGAATCTGGCAAACATCACAGACTCCAAGAATTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS CAA 72 bp | CTTATGATGAACAAAGTCAGATCTGGTCAGAATGTATaGCAGCAGCCAATGCTCCCTTTTGACTTGGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: LMMNKVRSGQNV*QQPMLPFDLAD Trigger: ATCAGCCAAGTCAAAAGGGAGCATTGGCTGCTGCAATACATTCTGACCAGATCTGACTTTGTTCATCATAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000460286.1 |
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| CDS TCA 72 bp | ATACTGGAATCGCAGATGCTTGTGACTTCCTCTTTGTaGTGTCTTATGATGAACAAAGTCAGATCTGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: ILESQMLVTSSL*CLMMNKVRSGQ Trigger: CTGACCAGATCTGACTTTGTTCATCATAAGACATCACAAAGAGGAAGTCACAAGCATCTGCGATTCCAGTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460286.1 |
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| CDS TCA 72 bp | GTTCCACCAACTCTGATGAGGAAGGTCGACTTGGATTaGGTGACATATTCACTAATGTCTGAATGGGATAAT | + |
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Preference number: 6 (lower is better) Translates to: VPPTLMRKVDLD*VTYSLMSEWDN Trigger: ATTATCCCATTCAGACATTAGTGAATATGTCACTCAATCCAAGTCGACCTTCCTCATCAGAGTTGGTGGAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490879.8 |
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| CDS CCA 72 bp | CTCTTTGTGATGTCTTATGATGAACAAAGTCAGATCTaGTCAGAATGTATTGCAGCAGCCAATGCTCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: LFVMSYDEQSQI*SECIAAANAPF Trigger: AAAGGGAGCATTGGCTGCTGCAATACATTCTGACCAGATCTGACTTTGTTCATCATAAGACATCACAAAGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460286.1 |
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| CDS CCA 72 bp | TCTTCCAAGTTCCTCCTTGAACAAAGTTACACTAATTaGTCTGTGGATTGTTCCATCAGCCTCATTAACACC | + |
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Preference number: 6 (lower is better) Translates to: SSKFLLEQSYTN*SVDCSISLINT Trigger: GGTGTTAATGAGGCTGATGGAACAATCCACAGACCAATTAGTGTAACTTTGTTCAAGGAGGAACTTGGAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000473108.1 ENST00000485121.5 ENST00000490879.8 |
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| CDS CAA 90 bp | TTCAAAGTGTTTTCTAACAAACTGGGATCTCTTCCAAGTTCCTCCTaGAACAAAGTTACACTAATTGGTCTGTGGATTGTTCCATCAGCC | + |
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Preference number: 6 (lower is better) Translates to: FKVFSNKLGSLPSSS*NKVTLIGLWIVPSA Trigger: GGCTGATGGAACAATCCACAGACCAATTAGTGTAACTTTGTTCAAGGAGGAACTTGGAAGAGATCCCAGTTTGTTAGAAAACACTTTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000473108.1 ENST00000485121.5 ENST00000490879.8 |
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| CDS TCA 72 bp | CCGAAAAGAAATAGGAAACATCTGCCCTTAGTGCTGTaGCATAACACACATATTTCCGTGGATGAAAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: PKRNRKHLPLVL*HNTHISVDERK Trigger: CTTTCTTTCATCCACGGAAATATGTGTGTTATGTCACAGCACTAAGGGCAGATGTTTCCTATTTCTTTTCGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000484939.1 |
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| CDS CAA 72 bp | ATTAACATTAATGGAAAACATCAGCGCATTCGGAGATaGACTACCCGAAAAGAAATAGGAAACATCTGCCCT | + |
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Preference number: 6 (lower is better) Translates to: ININGKHQRIRR*TTRKEIGNICP Trigger: AGGGCAGATGTTTCCTATTTCTTTTCGGGTAGTCAATCTCCGAATGCGCTGATGTTTTCCATTAATGTTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000484939.1 |
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| CDS CAA 72 bp | TTTTCTAACAAACTGGGATCTCTTCCAAGTTCCTCCTaGAACAAAGTTACACTAATTGGTCTGTGGATTGTT | + |
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Preference number: 6 (lower is better) Translates to: FSNKLGSLPSSS*NKVTLIGLWIV Trigger: AACAATCCACAGACCAATTAGTGTAACTTTGTTCAAGGAGGAACTTGGAAGAGATCCCAGTTTGTTAGAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000473108.1 ENST00000485121.5 ENST00000490879.8 |
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