Pregenerated sensors for SPAG11A (Homo sapiens)
Ensembl gene IDs: ENSG00000178287Ensembl transcript IDs: ENST00000326625.5, ENST00000434307.6, ENST00000454911.6, ENST00000642566.1
Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AAGCCACACATTCCTTTAAGCCCTTGGGATACTTCAACATCCCTGCCTTCCGGGGGCTTGAGACGATCCTaGAAACAGCAGGGCCACAAG | + |
|
Preference number: 4 (lower is better) Translates to: KPHIPLSPWDTSTSLPSGGLRRS*KQQGHK Trigger: CTTGTGGCCCTGCTGTTTCCAGGATCGTCTCAAGCC...CCCGGAAGGCAGGGATGTTGAAGTATCCCAAGGGCTTAAAGGAATGTGTGGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000434307.6 ENST00000642566.1 |
||
| CDS-3UTR CCA 90 bp | ACCTACTATAAGCCACACATTCCTTTAAGCCCTTGGGATACTTCAACATCCCTGGGCTTGAGACGATCCTaGAAACAGCAGGGCCACAAG | + |
|
Preference number: 4 (lower is better) Translates to: TYYKPHIPLSPWDTSTSLGLRRS*KQQGHK Trigger: CTTGTGGCCCTGCTGTTTCCAGGATCGTCTCAAGCC...CAGGGATGTTGAAGTATCCCAAGGGCTTAAAGGAATGTGTGGCTTATAGTAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434307.6 ENST00000642566.1 |
||
| CDS-3UTR CAA 90 bp | AAGCCACACATTCCTTTAAGCCCTTGGGATACTTCAACATCCCTGCCTTCCGGGCAGTGGAACATCCCCTaGGTAAGGTGGGGTGCGCGG | + |
|
Preference number: 5 (lower is better) Translates to: KPHIPLSPWDTSTSLPSGQWNIP*VRWGAR Trigger: CCGCGCACCCCACCTTACCAAGGGGATGTTCCACTG...CCCGGAAGGCAGGGATGTTGAAGTATCCCAAGGGCTTAAAGGAATGTGTGGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000642566.1 |
||
| CDS-3UTR CAA 90 bp | ACCTACTATAAGCCACACATTCCTTTAAGCCCTTGGGATACTTCAACATCCCTGGTGAGAGATGTGCACTaGGTAAGGTGGGGTGCGCGG | + |
|
Preference number: 5 (lower is better) Translates to: TYYKPHIPLSPWDTSTSLVRDVH*VRWGAR Trigger: CCGCGCACCCCACCTTACCAAGTGCACATCTCTCAC...CAGGGATGTTGAAGTATCCCAAGGGCTTAAAGGAATGTGTGGCTTATAGTAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434307.6 |
||
| CDS-3UTR CAA 90 bp | AAGCCACACATTCCTTTAAGCCCTTGGGATACTTCAACATCCCTGCCTTCCGGGATCAGCTCTTCACCTTaGGTGCTAAATTCATTCAAC | + |
|
Preference number: 5 (lower is better) Translates to: KPHIPLSPWDTSTSLPSGISSSP*VLNSFN Trigger: GTTGAATGAATTTAGCACCAAAGGTGAAGAGCTGAT...CCCGGAAGGCAGGGATGTTGAAGTATCCCAAGGGCTTAAAGGAATGTGTGGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000326625.5 ENST00000434307.6 ENST00000454911.6 |
||
| CDS-3UTR CAA 90 bp | TACTATAAGCCACACATTCCTTTAAGCCCTTGGGATACTTCAACATCCCTGCCTCATTCCTTTAAGCCCTaGGGATACTTCAACATCCCT | + |
|
Preference number: 5 (lower is better) Translates to: YYKPHIPLSPWDTSTSLPHSFKP*GYFNIP Trigger: AGGGATGTTGAAGTATCCCAAGGGCTTAAAGGAATG...AGGCAGGGATGTTGAAGTATCCCAAGGGCTTAAAGGAATGTGTGGCTTATAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000326625.5 ENST00000434307.6 ENST00000454911.6 ENST00000642566.1 |
||
| CDS-3UTR CAA 90 bp | ACCTACTATAAGCCACACATTCCTTTAAGCCCTTGGGATACTTCAACATCCCTGCATTCCTTTAAGCCCTaGGGATACTTCAACATCCCT | + |
|
Preference number: 5 (lower is better) Translates to: TYYKPHIPLSPWDTSTSLHSFKP*GYFNIP Trigger: AGGGATGTTGAAGTATCCCAAGGGCTTAAAGGAATG...CAGGGATGTTGAAGTATCCCAAGGGCTTAAAGGAATGTGTGGCTTATAGTAGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000326625.5 ENST00000434307.6 ENST00000454911.6 ENST00000642566.1 |
||
| CDS-3UTR CAA 90 bp | ACCTACTATAAGCCACACATTCCTTTAAGCCCTTGGGATACTTCAACATCCCTGATCAGCTCTTCACCTTaGGTGCTAAATTCATTCAAC | + |
|
Preference number: 5 (lower is better) Translates to: TYYKPHIPLSPWDTSTSLISSSP*VLNSFN Trigger: GTTGAATGAATTTAGCACCAAAGGTGAAGAGCTGAT...CAGGGATGTTGAAGTATCCCAAGGGCTTAAAGGAATGTGTGGCTTATAGTAGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000326625.5 ENST00000434307.6 ENST00000454911.6 |
||