Pregenerated sensors for SOX2 (Homo sapiens)
Ensembl gene IDs: ENSG00000181449Ensembl transcript IDs: ENST00000325404.3
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTGCAAGAAGCCTCTCCTaGAAAAATATTGGCAAATTC | + |
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Preference number: 3 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFARSLS*KNIGKF Trigger: GAATTTGCCAATATTTTTCAAGGAGAGGCTTCTTGC...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR TCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTCTGCGCCGTGCGCATTaGGGCCCGGGTGCTGCGGGT | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFLRRAH*GPGAAG Trigger: ACCCGCAGCACCCGGGCCTCAATGCGCACGGCGCAG...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR GCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTGGCTGTTTTTCTGGTTaGCGCCGGCCGCCGCCGCGG | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFGCFSG*RRPPPR Trigger: CCGCGGCGGCGGCCGGCGGCAACCAGAAAAACAGCC...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR GCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTCGCTCGCCATGCTATTaGCGCCGGGGGCCAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFRSPCY*RRGPAA Trigger: GGCTGCTGGCCCCCGGCGGCAATAGCATGGCGAGCG...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR GCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTCGACCCCGCTCGCCATaGTATTGCCGCCGGGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFRPRSP*YCRRGP Trigger: TGGCCCCCGGCGGCAATAGCATGGCGAGCGGGGTCG...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTGCTTCCCTCCTCCTCTaGCCGATCCTGCCGCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFASLLL*PILPPP Trigger: CGGCGGCGGCAGGATCGGCCAGAGGAGGAGGGAAGC...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR GCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTGGGCTGCATCTGCGCTaGGCCGTGCGCATTGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFGLHLR*AVRIEA Trigger: GGCCTCAATGCGCACGGCGCAGCGCAGATGCAGCCC...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR GCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTTGGAGCCAAGAGCCATaGCAGGGGTGCCCTGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFWSQEP*QGCPAA Trigger: CGCAGCAGGGCACCCCTGGCATGGCTCTTGGCTCCA...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR TCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTAGCTGGCCTCGGACTTaGCCACCGAACCCATGGAGC | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFSWPRT*PPNPWS Trigger: GCTCCATGGGTTCGGTGGTCAAGTCCGAGGCCAGCT...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR GCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTCCATCATGTTGTACATaGGGGCGCTGTGCGCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFPSCCT*GRCARA Trigger: GGCCCGCGCACAGCGCCCGCATGTACAACATGATGG...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR GCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTTGCATGGGCTGCATCTaGGCTGCGCCGTGCGCATTG | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFCMGCI*AAPCAL Trigger: CAATGCGCACGGCGCAGCGCAGATGCAGCCCATGCA...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTACATGTGAAGTCTGCTaGGGGCGGCGGGTTCCGGCA | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFTCEVC*GRRVPA Trigger: TGCCGGAACCCGCCGCCCCCAGCAGACTTCACATGT...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR TCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTCATTCATGGGCCGCTTaGCGCGGTCCGGGCTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFHSWAA*RGPGCF Trigger: AAAACAGCCCGGACCGCGTCAAGCGGCCCATGAATG...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR TCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTCGGGGAGATACATGCTaGTCATGTCCCGGAGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFRGDTC*SCPGGP Trigger: GGGACCTCCGGGACATGATCAGCATGTATCTCCCCG...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTAGGACATGCTGTAGGTaGGCGAGCCGTTCATGTAGG | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFRTCCR*ASRSCR Trigger: CCTACATGAACGGCTCGCCCACCTACAGCATGTCCT...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR TCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTACTTATCCTTCTTCATaGGCGTCTTGGTTTTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFTYPSS*ASWFSA Trigger: GGCGGAAAACCAAGACGCTCATGAAGAAGGATAAGT...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR GCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTCCAACGGTGTCAACCTaGATGGCCATTTTTGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFPTVST*MAIFAF Trigger: AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGG...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CCA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTCGGTGTCAACCTGCATaGCCATTTTTGCTTTTAACA | + |
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Preference number: 4 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFRCQPA*PFLLLT Trigger: TGTTAAAAGCAAAAATGGCCATGCAGGTTGACACCG...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CAA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTGCTGCGCCGTGCGCATaGAGGCCCGGGTGCTGCGGG | + |
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Preference number: 5 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFAAPCA*RPGCCG Trigger: CCCGCAGCACCCGGGCCTCAATGCGCACGGCGCAGC...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CAA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTCCGCTCGCCATGCTATaGCCGCCGGGGGCCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFPLAML*PPGASS Trigger: GCTGCTGGCCCCCGGCGGCAATAGCATGGCGAGCGG...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CAA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTGCATTCATGGGCCGCTaGACGCGGTCCGGGCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFAFMGR*TRSGLF Trigger: AAACAGCCCGGACCGCGTCAAGCGGCCCATGAATGC...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CAA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTGAGCTGGCCTCGGACTaGACCACCGAACCCATGGAG | + |
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Preference number: 5 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFELASD*TTEPME Trigger: CTCCATGGGTTCGGTGGTCAAGTCCGAGGCCAGCTC...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CAA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTTTCTTCATGAGCGTCTaGGTTTTCCGCCGGGGCCGG | + |
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Preference number: 5 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFFFMSV*VFRRGR Trigger: CCGGCCCCGGCGGAAAACCAAGACGCTCATGAAGAA...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 23 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CAA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTTCCGTCTCCATCATGTaGTACATGCGGGCGCTGTGC | + |
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Preference number: 5 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFSVSIM*YMRALC Trigger: GCACAGCGCCCGCATGTACAACATGATGGAGACGGA...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CAA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTACTACTTTCCCCCTTTaGCAAACACTCTCTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFTTFPL*QTLSSL Trigger: CAGAGAAGAGAGTGTTTGCAAAAGGGGGAAAGTAGT...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS-3UTR CAA 90 bp | AAAAGCTATTATAAATTACCAACGGTGTCAACCTGCATGGCCATTTTTGCTTTTCCTGCATGGCCATTTTaGCTTTTAACAGTAAGTTAT | + |
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Preference number: 5 (lower is better) Translates to: KSYYKLPTVSTCMAIFAFPAWPF*LLTVSY Trigger: ATAACTTACTGTTAAAAGCAAAAATGGCCATGCAGG...AAAAGCAAAAATGGCCATGCAGGTTGACACCGTTGGTAATTTATAATAGCTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS GCA 72 bp | CCGGCGGCTTCAGCTCCGTCTCCATCATGTTGTACATaGGGGCGCTGTGCGCGGGCCCGGCCCGCCGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: PAASAPSPSCCT*GRCARARPAGG Trigger: GCCGCCGGCGGGCCGGGCCCGCGCACAGCGCCCGCATGTACAACATGATGGAGACGGAGCTGAAGCCGCCGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS CAA 72 bp | TGCGGGCCCGGCGGCTTCAGCTCCGTCTCCATCATGTaGTACATGCGGGCGCTGTGCGCGGGCCCGGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: CGPGGFSSVSIM*YMRALCAGPAR Trigger: GCGGGCCGGGCCCGCGCACAGCGCCCGCATGTACAACATGATGGAGACGGAGCTGAAGCCGCCGGGCCCGCA 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS CAA 90 bp | GAAGTTTGCTGCGGGCCCGGCGGCTTCAGCTCCGTCTCCATCATGTaGTACATGCGGGCGCTGTGCGCGGGCCCGGCCCGCCGGCGGCCG | + |
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Preference number: 6 (lower is better) Translates to: EVCCGPGGFSSVSIM*YMRALCAGPARRRP Trigger: CGGCCGCCGGCGGGCCGGGCCCGCGCACAGCGCCCGCATGTACAACATGATGGAGACGGAGCTGAAGCCGCCGGGCCCGCAGCAAACTTC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS TCA 72 bp | GCAGCCCGCCGGGCAGCGTGTACTTATCCTTCTTCATaGGCGTCTTGGTTTTCCGCCGGGGCCGGTATTTAT | + |
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Preference number: 6 (lower is better) Translates to: AARRAACTYPSS*ASWFSAGAGIY Trigger: ATAAATACCGGCCCCGGCGGAAAACCAAGACGCTCATGAAGAAGGATAAGTACACGCTGCCCGGCGGGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS CAA 90 bp | CCTCTGGCCGATCCTGCCGCCGCCGATGATTGTTATTATTATTTTTaGGAAAGGCTTAAGCCTGGGGCTCAAACTTCTCTCCCTTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: PLADPAAADDCYYYF*ERLKPGAQTSLPFF Trigger: AAAGAAAGGGAGAGAAGTTTGAGCCCCAGGCTTAAGCCTTTCCAAAAAATAATAATAACAATCATCGGCGGCGGCAGGATCGGCCAGAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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| CDS CAA 72 bp | GATCCTGCCGCCGCCGATGATTGTTATTATTATTTTTaGGAAAGGCTTAAGCCTGGGGCTCAAACTTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: DPAAADDCYYYF*ERLKPGAQTSL Trigger: GAGAGAAGTTTGAGCCCCAGGCTTAAGCCTTTCCAAAAAATAATAATAACAATCATCGGCGGCGGCAGGATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000325404.3 |
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