Pregenerated sensors for SOX17 (Homo sapiens)
Ensembl gene IDs: ENSG00000164736Ensembl transcript IDs: ENST00000297316.5
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCACACTGCTTCTGGCCTaGAGGCTGGGGCGGATCAGG | + |
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Preference number: 2 (lower is better) Translates to: QVKLMIQQLENQNYLDIPTLLLA*RLGRIR Trigger: CCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGT...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR TCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTAGGAGCTCGGCGGGCTaGCTGGGGTCCGTGCCGTCC | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPRSSAG*LGSVPS Trigger: GGACGGCACGGACCCCAGTCAGCCCGCCGAGCTCCT...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTAGATGCCCCGAGGGCTaGGCGGGTCTCCCGGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPRCPEG*AGLPAR Trigger: TCGGGCCGGGAGACCCGCGCAGCCCTCGGGGCATCT...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTCCGGCGGGGAAGCCCTaGTCGGGGAACTGGAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPPAGKP*SGNWRP Trigger: GGGCCTCCAGTTCCCCGAGCAGGGCTTCCCCGCCGG...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTCGAGTCGGGGGTGCATaGGACCGGCGGGAGGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPRVGGA*DRREAP Trigger: CGGAGCCTCCCGCCGGTCCCATGCACCCCCGACTCG...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTGGCTCAGCCAGGCCGTaGAGGAAGCCGCCCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPGSARP*RKPPST Trigger: GGTGGAGGGCGGCTTCCTGCACGGCCTGGCTGAGCC...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR TCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTTGGGGAGTGAGGCACTaGGATGCCCCGAGGGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPWGVRH*DAPRAA Trigger: CGCAGCCCTCGGGGCATCTCAGTGCCTCACTCCCCA...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTCCGCCGCCCGTGTTCTaGCCTGTCGCGGTCTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPPPPVF*PVAVWS Trigger: AGACCAGACCGCGACAGGCCAGAACACGGGCGGCGG...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTGGGACGTGTCGGGCGTaGGCAACGGGTAGCCGTCGA | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPGTCRA*ATGSRR Trigger: TCGACGGCTACCCGTTGCCCACGCCCGACACGTCCC...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTTGCTGGTGTTGCGGCTaGATCTGGAAGCCGCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPCWCCG*IWKPRP Trigger: CGGGCGCGGCTTCCAGATGCAGCCGCAACACCAGCA...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTTGGCCTGTCGCGGTCTaGTCTACAGCGTACCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPWPVAV*STAYPG Trigger: CCCTGGGTACGCTGTAGACCAGACCGCGACAGGCCA...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTACACCACCGAGGAAATaGCCCCGTGGCTGTCGGGGA | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPTPPRK*PRGCRG Trigger: TCCCCGACAGCCACGGGGCCATTTCCTCGGTGGTGT...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTAATATACCGCGGAGCTaGCGTCGGACACCACCGAGG | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPNIPRS*RRTPPR Trigger: CCTCGGTGGTGTCCGACGCCAGCTCCGCGGTATATT...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTGCGCCTTCCACGACTTaGCCAGCATCTTGCTCAACT | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPAPSTT*PASCST Trigger: AGTTGAGCAAGATGCTGGGCAAGTCGTGGAAGGCGC...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTGGCCCATCTCAGGCTTaGACACGAAGTGCAGATACT | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPGPSQA*TRSADT Trigger: AGTATCTGCACTTCGTGTGCAAGCCTGAGATGGGCC...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTAGCGCGTAGCTGTAGGTaGCGGCCGCCGGGCAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: FCDSFILNPAMLATSQGVARSCR*RPPGSP Trigger: GGGACTGCCCGGCGGCCGGCACCTACAGCTACGCGC...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTACACGTCAGGATAGTTaGAGTAATATACCGCGGAGC | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPTRQDS*SNIPRS Trigger: GCTCCGCGGTATATTACTGCAACTATCCTGACGTGT...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTGGCTTGCACACGAAGTaGAGATACTGTTCAAATTCC | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPGLHTK*RYCSNS Trigger: GGAATTTGAACAGTATCTGCACTTCGTGTGCAAGCC...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTACCTTCATGTCCCCGATaGGGCTCAGCGACTCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: FCDSFILNPAMLATSQGVPSCPR*GSATRP Trigger: GGGCCGAGTCGCTGAGCCCCATCGGGGACATGAAGG...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCGGGACCCGCGGGCTCTaGGCCGAGTCGGGGGTGCAT | + |
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Preference number: 4 (lower is better) Translates to: QVKLMIQQLENQNYLDIPGTRGL*AESGVH Trigger: ATGCACCCCCGACTCGGCCCAGAGCCCGCGGGTCCC...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGAAGTGTGTAACACTGCTTCTGGCCTGCAGGCTGGGGCGGATCAGGGACCTTGGAGGAAGCTGTTTTaGGACACATTCAAAGCTAGT | + |
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Preference number: 4 (lower is better) Translates to: QEVCNTASGLQAGADQGPWRKLF*DTFKAS Trigger: ACTAGCTTTGAATGTGTCCCAAAACAGCTTCCTCCA...AGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCGCCGCTTCACCTGCTTaGGCCGCCGCGGCCGGTACT | + |
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Preference number: 4 (lower is better) Translates to: QVKLMIQQLENQNYLDIPAASPA*AAAAGT Trigger: AGTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGGC...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTAACACTGCTTCTGGCCTaGAGGCTGGGGCGGATCAGG | + |
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Preference number: 4 (lower is better) Translates to: FCDSFILNPAMLATSQGVTLLLA*RLGRIR Trigger: CCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGT...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCACACGTGAAGGGCGCTaGGTGGCGCCAGGAGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: QVKLMIQQLENQNYLDIPTREGR*VAPGGP Trigger: CGGGCCTCCTGGCGCCACCCAGCGCCCTTCACGTGT...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTATGCTGGTGCTGGTGCTaGTGCTGGTGTTGCGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: FCDSFILNPAMLATSQGVCWCWC*CWCCGC Trigger: GCAGCCGCAACACCAGCACCAGCACCAGCACCAGCA...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTATTCTGGCCTGCAGGCTaGGGCGGATCAGGGACCTGT | + |
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Preference number: 4 (lower is better) Translates to: FCDSFILNPAMLATSQGVFWPAG*GGSGTC Trigger: ACAGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAA...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCGTGAAGGGCGCTGGGTaGCGCCAGGAGGCCCGGAAT | + |
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Preference number: 4 (lower is better) Translates to: QVKLMIQQLENQNYLDIPVKGAG*RQEARN Trigger: ATTCCGGGCCTCCTGGCGCCACCCAGCGCCCTTCAC...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCAGCGCGCTCTGGGTCTaGCTCTGGTCGTCACTGGCG | + |
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Preference number: 4 (lower is better) Translates to: QVKLMIQQLENQNYLDIPSALWV*LWSSLA Trigger: CGCCAGTGACGACCAGAGCCAGACCCAGAGCGCGCT...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CCA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTAGAGGAAATGGCCCCGTaGCTGTCGGGGAGATTCACA | + |
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Preference number: 4 (lower is better) Translates to: FCDSFILNPAMLATSQGVEEMAP*LSGRFT Trigger: TGTGAATCTCCCCGACAGCCACGGGGCCATTTCCTC...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCTGGTGCTGGTGCTGGTaGTGGTGTTGCGGCTGCATC | + |
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Preference number: 4 (lower is better) Translates to: QVKLMIQQLENQNYLDIPWCWCW*WCCGCI Trigger: GATGCAGCCGCAACACCAGCACCAGCACCAGCACCA...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCCTCAACTCGGCGTTGTaGAGGTCTGGATTCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: QVKLMIQQLENQNYLDIPLNSAL*RSGFCC Trigger: GCAGCAGAATCCAGACCTGCACAACGCCGAGTTGAG...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCACTGTTCAAATTCCGTaGGGTCCACCTCCCCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: QVKLMIQQLENQNYLDIPTVQIP*GPPPRG Trigger: TCCTCGGGGAGGTGGACCGCACGGAATTTGAACAGT...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR GCA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCAAACCCAGCGATGCTTaGCACTTCCCAAGGTGTAAA | + |
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Preference number: 4 (lower is better) Translates to: QVKLMIQQLENQNYLDIPKPSDA*HFPRCK Trigger: TTTACACCTTGGGAAGTGGCAAGCATCGCTGGGTTT...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR TCA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTATTGGAAATAGGGTTTTaGCAATCCAACTATGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: FCDSFILNPAMLATSQGVLEIGF*QSNYGK Trigger: TTTCCCATAGTTGGATTGTCAAAACCCTATTTCCAA...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR TCA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTAGAAACTAAGATTACTTaGAGTAGGCTCATTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: FCDSFILNPAMLATSQGVETKIT*SRLIPE Trigger: TTCTGGAATGAGCCTACTTCAAGTAATCTTAGTTTC...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR TCA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTAAAGATTAAGGTAAACTaGATGTCGAGGAGTGTAAAG | + |
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Preference number: 4 (lower is better) Translates to: FCDSFILNPAMLATSQGVKIKVN*MSRSVK Trigger: CTTTACACTCCTCGACATTCAGTTTACCTTAATCTT...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 90 bp | GCTGGGTGGCGCCAGGAGGCCCGGAATCGAGGGACCCGCGGGCTCTaGGCCGAGTCGGGGGTGCATGGGACCGGCGGGAGGCTCCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: AGWRQEARNRGTRGL*AESGVHGTGGRLRG Trigger: CCCCCGGAGCCTCCCGCCGGTCCCATGCACCCCCGACTCGGCCCAGAGCCCGCGGGTCCCTCGATTCCGGGCCTCCTGGCGCCACCCAGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 90 bp | CCCGGGCGAGCCCATCGCGCCGTAGTACACGTGAAGGGCGCTGGGTaGCGCCAGGAGGCCCGGAATCGAGGGACCCGCGGGCTCTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: PGRAHRAVVHVKGAG*RQEARNRGTRGLWA Trigger: GGCCCAGAGCCCGCGGGTCCCTCGATTCCGGGCCTCCTGGCGCCACCCAGCGCCCTTCACGTGTACTACGGCGCGATGGGCTCGCCCGGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 90 bp | CCGCCCCGGGCGAGCCCATCGCGCCGTAGTACACGTGAAGGGCGCTaGGTGGCGCCAGGAGGCCCGGAATCGAGGGACCCGCGGGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: PPRASPSRRSTREGR*VAPGGPESRDPRAL Trigger: CAGAGCCCGCGGGTCCCTCGATTCCGGGCCTCCTGGCGCCACCCAGCGCCCTTCACGTGTACTACGGCGCGATGGGCTCGCCCGGGGCGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 90 bp | CAAATTCCGTGCGGTCCACCTCCCCGAGGAGCTCGGCGGGCTGACTaGGGTCCGTGCCGTCCCGGCAGGGCAGTGCCTCCGGAGGGGGCG | + |
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Preference number: 5 (lower is better) Translates to: QIPCGPPPRGARRAD*GPCRPGRAVPPEGA Trigger: CGCCCCCTCCGGAGGCACTGCCCTGCCGGGACGGCACGGACCCCAGTCAGCCCGCCGAGCTCCTCGGGGAGGTGGACCGCACGGAATTTG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS TCA 90 bp | TGTTCAAATTCCGTGCGGTCCACCTCCCCGAGGAGCTCGGCGGGCTaGCTGGGGTCCGTGCCGTCCCGGCAGGGCAGTGCCTCCGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: CSNSVRSTSPRSSAG*LGSVPSRQGSASGG Trigger: CCCTCCGGAGGCACTGCCCTGCCGGGACGGCACGGACCCCAGTCAGCCCGCCGAGCTCCTCGGGGAGGTGGACCGCACGGAATTTGAACA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 90 bp | TCTCCCGGCCCGAAGCCGCCGCCCGTGTTCTGGCCTGTCGCGGTCTaGTCTACAGCGTACCCAGGGCCCCCAGCCGGCCTAGTGACACTG | + |
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Preference number: 5 (lower is better) Translates to: SPGPKPPPVFWPVAV*STAYPGPPAGLVTL Trigger: CAGTGTCACTAGGCCGGCTGGGGGCCCTGGGTACGCTGTAGACCAGACCGCGACAGGCCAGAACACGGGCGGCGGCTTCGGGCCGGGAGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS GCA 90 bp | CCATCTCAGGCTTGCACACGAAGTGCAGATACTGTTCAAATTCCGTaGGGTCCACCTCCCCGAGGAGCTCGGCGGGCTGACTGGGGTCCG | + |
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Preference number: 5 (lower is better) Translates to: PSQACTRSADTVQIP*GPPPRGARRADWGP Trigger: CGGACCCCAGTCAGCCCGCCGAGCTCCTCGGGGAGGTGGACCGCACGGAATTTGAACAGTATCTGCACTTCGTGTGCAAGCCTGAGATGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 90 bp | GGACCTGTCACACGTCAGGATAGTTGCAGTAATATACCGCGGAGCTaGCGTCGGACACCACCGAGGAAATGGCCCCGTGGCTGTCGGGGA | + |
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Preference number: 5 (lower is better) Translates to: GPVTRQDSCSNIPRS*RRTPPRKWPRGCRG Trigger: TCCCCGACAGCCACGGGGCCATTTCCTCGGTGGTGTCCGACGCCAGCTCCGCGGTATATTACTGCAACTATCCTGACGTGTGACAGGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS GCA 90 bp | CTGCAGGCTGGGGCGGATCAGGGACCTGTCACACGTCAGGATAGTTaGAGTAATATACCGCGGAGCTGGCGTCGGACACCACCGAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: LQAGADQGPVTRQDS*SNIPRSWRRTPPRK Trigger: TTTCCTCGGTGGTGTCCGACGCCAGCTCCGCGGTATATTACTGCAACTATCCTGACGTGTGACAGGTCCCTGATCCGCCCCAGCCTGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS GCA 90 bp | TCACACCGGAGTCATGCCCCTGGTAGGGGAGGCCCATCTCAGGCTTaGACACGAAGTGCAGATACTGTTCAAATTCCGTGCGGTCCACCT | + |
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Preference number: 5 (lower is better) Translates to: SHRSHAPGRGGPSQA*TRSADTVQIPCGPP Trigger: AGGTGGACCGCACGGAATTTGAACAGTATCTGCACTTCGTGTGCAAGCCTGAGATGGGCCTCCCCTACCAGGGGCATGACTCCGGTGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS GCA 90 bp | GATTTCCTTAGCTCCTCCAGGAAGTGTGTAACACTGCTTCTGGCCTaGAGGCTGGGGCGGATCAGGGACCTGTCACACGTCAGGATAGTT | + |
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Preference number: 5 (lower is better) Translates to: DFLSSSRKCVTLLLA*RLGRIRDLSHVRIV Trigger: AACTATCCTGACGTGTGACAGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTGGAGGAGCTAAGGAAATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CAA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCAGCCGCTTCACCTGCTaGCGCCGCCGCGGCCGGTAC | + |
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Preference number: 5 (lower is better) Translates to: QVKLMIQQLENQNYLDIPSRFTC*RRRGRY Trigger: GTACCGGCCGCGGCGGCGCAAGCAGGTGAAGCGGCT...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CAA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTAGTGCTGGTGCTGGTGTaGCGGCTGCATCTGGAAGCC | + |
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Preference number: 5 (lower is better) Translates to: FCDSFILNPAMLATSQGVVLVLV*RLHLEA Trigger: GGCTTCCAGATGCAGCCGCAACACCAGCACCAGCAC...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CAA 90 bp | TTTTGTGACTCCTTTATCTTAAACCCAGCGATGCTTGCCACTTCCCAAGGTGTAAGGCCCATCTCAGGCTaGCACACGAAGTGCAGATAC | + |
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Preference number: 5 (lower is better) Translates to: FCDSFILNPAMLATSQGVRPISG*HTKCRY Trigger: GTATCTGCACTTCGTGTGCAAGCCTGAGATGGGCCT...TACACCTTGGGAAGTGGCAAGCATCGCTGGGTTTAAGATAAAGGAGTCACAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CAA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCAGCGCCTTCCACGACTaGCCCAGCATCTTGCTCAAC | + |
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Preference number: 5 (lower is better) Translates to: QVKLMIQQLENQNYLDIPSAFHD*PSILLN Trigger: GTTGAGCAAGATGCTGGGCAAGTCGTGGAAGGCGCT...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CAA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCTTGCTCAACTCGGCGTaGTGCAGGTCTGGATTCTGC | + |
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Preference number: 5 (lower is better) Translates to: QVKLMIQQLENQNYLDIPLLNSA*CRSGFC Trigger: GCAGAATCCAGACCTGCACAACGCCGAGTTGAGCAA...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS-3UTR CAA 90 bp | CAGGTCAAGCTTATGATTCAACAGTTAGAAAACCAAAATTACTTGGACATCCCCCTTGGAAATAGGGTTTaGACAATCCAACTATGGGAA | + |
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Preference number: 5 (lower is better) Translates to: QVKLMIQQLENQNYLDIPLGNRV*TIQLWE Trigger: TTCCCATAGTTGGATTGTCAAAACCCTATTTCCAAG...GGGGATGTCCAAGTAATTTTGGTTTTCTAACTGTTGAATCATAAGCTTGACCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 72 bp | CGGGGTCCACGCCGTCCAGCGGGGACGTGTCGGGCGTaGGCAACGGGTAGCCGTCGAGCGGAGGCGCGCCCA | + |
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Preference number: 6 (lower is better) Translates to: RGPRRPAGTCRA*ATGSRRAEARP Trigger: TGGGCGCGCCTCCGCTCGACGGCTACCCGTTGCCCACGCCCGACACGTCCCCGCTGGACGGCGTGGACCCCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 72 bp | CGCCAGGAGGCCCGGAATCGAGGGACCCGCGGGCTCTaGGCCGAGTCGGGGGTGCATGGGACCGGCGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: RQEARNRGTRGL*AESGVHGTGGR Trigger: CCTCCCGCCGGTCCCATGCACCCCCGACTCGGCCCAGAGCCCGCGGGTCCCTCGATTCCGGGCCTCCTGGCG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS TCA 72 bp | TCCGTGCGGTCCACCTCCCCGAGGAGCTCGGCGGGCTaGCTGGGGTCCGTGCCGTCCCGGCAGGGCAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: SVRSTSPRSSAG*LGSVPSRQGSA Trigger: GGCACTGCCCTGCCGGGACGGCACGGACCCCAGTCAGCCCGCCGAGCTCCTCGGGGAGGTGGACCGCACGGA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS GCA 72 bp | GGCCAGCGTAGTCCGAGACCTGCGCGTAGCTGTAGGTaGCGGCCGCCGGGCAGTCCCCGGGCATCGGGGCGG | + |
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Preference number: 6 (lower is better) Translates to: GQRSPRPARSCR*RPPGSPRASGR Trigger: CCGCCCCGATGCCCGGGGACTGCCCGGCGGCCGGCACCTACAGCTACGCGCAGGTCTCGGACTACGCTGGCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 72 bp | CGCGGGTCTCCCGGCCCGAAGCCGCCGCCCGTGTTCTaGCCTGTCGCGGTCTGGTCTACAGCGTACCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: RGSPGPKPPPVF*PVAVWSTAYPG Trigger: CCCTGGGTACGCTGTAGACCAGACCGCGACAGGCCAGAACACGGGCGGCGGCTTCGGGCCGGGAGACCCGCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 72 bp | GCCCATCGCGCCGTAGTACACGTGAAGGGCGCTGGGTaGCGCCAGGAGGCCCGGAATCGAGGGACCCGCGGG | + |
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Preference number: 6 (lower is better) Translates to: AHRAVVHVKGAG*RQEARNRGTRG Trigger: CCCGCGGGTCCCTCGATTCCGGGCCTCCTGGCGCCACCCAGCGCCCTTCACGTGTACTACGGCGCGATGGGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 72 bp | CCGAAGCCGCCGCCCGTGTTCTGGCCTGTCGCGGTCTaGTCTACAGCGTACCCAGGGCCCCCAGCCGGCCTA | + |
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Preference number: 6 (lower is better) Translates to: PKPPPVFWPVAV*STAYPGPPAGL Trigger: TAGGCCGGCTGGGGGCCCTGGGTACGCTGTAGACCAGACCGCGACAGGCCAGAACACGGGCGGCGGCTTCGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 72 bp | GCGAGCCCATCGCGCCGTAGTACACGTGAAGGGCGCTaGGTGGCGCCAGGAGGCCCGGAATCGAGGGACCCG | + |
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Preference number: 6 (lower is better) Translates to: ASPSRRSTREGR*VAPGGPESRDP Trigger: CGGGTCCCTCGATTCCGGGCCTCCTGGCGCCACCCAGCGCCCTTCACGTGTACTACGGCGCGATGGGCTCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 72 bp | GAGCTGGCGTCGGACACCACCGAGGAAATGGCCCCGTaGCTGTCGGGGAGATTCACACCGGAGTCATGCCCC | + |
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Preference number: 6 (lower is better) Translates to: ELASDTTEEMAP*LSGRFTPESCP Trigger: GGGGCATGACTCCGGTGTGAATCTCCCCGACAGCCACGGGGCCATTTCCTCGGTGGTGTCCGACGCCAGCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 72 bp | ATACCGCGGAGCTGGCGTCGGACACCACCGAGGAAATaGCCCCGTGGCTGTCGGGGAGATTCACACCGGAGT | + |
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Preference number: 6 (lower is better) Translates to: IPRSWRRTPPRK*PRGCRGDSHRS Trigger: ACTCCGGTGTGAATCTCCCCGACAGCCACGGGGCCATTTCCTCGGTGGTGTCCGACGCCAGCTCCGCGGTAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS GCA 72 bp | GCTTGCACACGAAGTGCAGATACTGTTCAAATTCCGTaGGGTCCACCTCCCCGAGGAGCTCGGCGGGCTGAC | + |
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Preference number: 6 (lower is better) Translates to: ACTRSADTVQIP*GPPPRGARRAD Trigger: GTCAGCCCGCCGAGCTCCTCGGGGAGGTGGACCGCACGGAATTTGAACAGTATCTGCACTTCGTGTGCAAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS GCA 72 bp | AGCTCCTCCAGGAAGTGTGTAACACTGCTTCTGGCCTaGAGGCTGGGGCGGATCAGGGACCTGTCACACGTC | + |
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Preference number: 6 (lower is better) Translates to: SSSRKCVTLLLA*RLGRIRDLSHV Trigger: GACGTGTGACAGGTCCCTGATCCGCCCCAGCCTGCAGGCCAGAAGCAGTGTTACACACTTCCTGGAGGAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS GCA 72 bp | GGGGCGGATCAGGGACCTGTCACACGTCAGGATAGTTaGAGTAATATACCGCGGAGCTGGCGTCGGACACCA | + |
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Preference number: 6 (lower is better) Translates to: GADQGPVTRQDS*SNIPRSWRRTP Trigger: TGGTGTCCGACGCCAGCTCCGCGGTATATTACTGCAACTATCCTGACGTGTGACAGGTCCCTGATCCGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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| CDS CCA 72 bp | ACACGTCAGGATAGTTGCAGTAATATACCGCGGAGCTaGCGTCGGACACCACCGAGGAAATGGCCCCGTGGC | + |
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Preference number: 6 (lower is better) Translates to: TRQDSCSNIPRS*RRTPPRKWPRG Trigger: GCCACGGGGCCATTTCCTCGGTGGTGTCCGACGCCAGCTCCGCGGTATATTACTGCAACTATCCTGACGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000297316.5 |
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