Pregenerated sensors for SOCS3-DT (Homo sapiens)

Ensembl gene IDs: ENSG00000266970

Ensembl transcript IDs: ENST00000587575.1, ENST00000592569.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TGGCGAAGTGGGGTCTTCTTAGCTCAGCTCACAGCCACTTCAGCTTaGGCTGGAAGCAGGGGGCTAAGGCCTTCTTGTCCTTGGTGGAGG	+
Preference number: 5 (lower is better) Translates to: WRSGVFLAQLTATSA*AGSRGLRPSCPWWR Trigger: CCTCCACCAAGGACAAGAAGGCCTTAGCCCCCTGCTTCCAGCTCAAGCTGAAGTGGCTGTGAGCTGAGCTAAGAAGACCCCACTTCGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000592569.1
CDS CCA 90 bp	TTCCTTTGTCTTCAGATTAACAGGCCTCTAATCTCCAGCGAGCCATaGATGGGGCTTCCCAGCACTCACACCCTCTATCCCATCTGTATA	+
Preference number: 5 (lower is better) Translates to: FLCLQINRPLISSEP*MGLPSTHTLYPICI Trigger: TATACAGATGGGATAGAGGGTGTGAGTGCTGGGAAGCCCCATCCATGGCTCGCTGGAGATTAGAGGCCTGTTAATCTGAAGACAAAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000587575.1
CDS GCA 72 bp	CCACGTAACACTGGCAGTGGGCCGAGGCTGGGTAGCTaGCACGAAGGGGCGTCCCCTGCAGCCCTGGGTCTC	+
Preference number: 6 (lower is better) Translates to: PRNTGSGPRLGS*HEGASPAALGL Trigger: GAGACCCAGGGCTGCAGGGGACGCCCCTTCGTGGCAGCTACCCAGCCTCGGCCCACTGCCAGTGTTACGTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000592569.1
CDS TCA 72 bp	CAGCCCTGGGTCTCCCCTCTGGAATCTGCCCGCAGGTaGCTGTCGCACGTCTCCAACCTCCGGCTCCCGGGT	+
Preference number: 6 (lower is better) Translates to: QPWVSPLESARR*LSHVSNLRLPG Trigger: ACCCGGGAGCCGGAGGTTGGAGACGTGCGACAGTCACCTGCGGGCAGATTCCAGAGGGGAGACCCAGGGCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000592569.1
CDS CCA 72 bp	TCATGCAGCCACGTAACACTGGCAGTGGGCCGAGGCTaGGTAGCTGCCACGAAGGGGCGTCCCCTGCAGCCC	+
Preference number: 6 (lower is better) Translates to: SCSHVTLAVGRG*VAATKGRPLQP Trigger: GGGCTGCAGGGGACGCCCCTTCGTGGCAGCTACCCAGCCTCGGCCCACTGCCAGTGTTACGTGGCTGCATGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000592569.1
CDS GCA 72 bp	GTCTTCCACTGGGCTCTACCCAGAAGTGTATGGTCATaGAGCCACGTAACACTGGCAGTGGGCCGAGGCTGG	+
Preference number: 6 (lower is better) Translates to: VFHWALPRSVWS*SHVTLAVGRGW Trigger: CCAGCCTCGGCCCACTGCCAGTGTTACGTGGCTGCATGACCATACACTTCTGGGTAGAGCCCAGTGGAAGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000592569.1
CDS CAA 90 bp	CTGGCGAAGTGGGGTCTTCTTAGCTCAGCTCACAGCCACTTCAGCTaGAGCTGGAAGCAGGGGGCTAAGGCCTTCTTGTCCTTGGTGGAG	+
Preference number: 6 (lower is better) Translates to: LAKWGLLSSAHSHFS*SWKQGAKAFLSLVE Trigger: CTCCACCAAGGACAAGAAGGCCTTAGCCCCCTGCTTCCAGCTCAAGCTGAAGTGGCTGTGAGCTGAGCTAAGAAGACCCCACTTCGCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000592569.1
CDS CAA 72 bp	CCTTCAAAGTTGGTTCAGGATCTCAAGGGCTATTCCTaGAGTCTTCTTTGTCTTCCACTGGGCTCTACCCAG	+
Preference number: 6 (lower is better) Translates to: PSKLVQDLKGYS*SLLCLPLGSTQ Trigger: CTGGGTAGAGCCCAGTGGAAGACAAAGAAGACTCAAGGAATAGCCCTTGAGATCCTGAACCAACTTTGAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000592569.1

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