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Pregenerated sensors for SOCAR (Homo sapiens)

Ensembl gene IDs: ENSG00000240350

Ensembl transcript IDs: ENST00000455309.2, ENST00000627971.1

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CACTGCTCATCCCTGCTAACTCAGGCTCCTTCCACCTCTTCACCCTaGCTCTCCCCAGTGGTGGCCACCCCCAGCTGCAAGGGCGATAAC +
Preference number: 5 (lower is better)
Translates to: HCSSLLTQAPSTSSP*LSPVVATPSCKGDN
Trigger: GTTATCGCCCTTGCAGCTGGGGGTGGCCACCACTGGGGAGAGGCAGGGTGAAGAGGTGGAAGGAGCCTGAGTTAGCAGGGATGAGCAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000455309.2
CDS CCA 90 bp GTTTCACATAAAAGAAATCCAGAGGATAGTGGGTCTGGGGTTACCTaGCCACTGCTCATCCCTGCTAACTCAGGCTCCTTCCACCTCTTC +
Preference number: 5 (lower is better)
Translates to: VSHKRNPEDSGSGVT*PLLIPANSGSFHLF
Trigger: GAAGAGGTGGAAGGAGCCTGAGTTAGCAGGGATGAGCAGTGGCCAGGTAACCCCAGACCCACTATCCTCTGGATTTCTTTTATGTGAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000455309.2
CDS CCA 90 bp AACATCCAGAACAGGCAAATAGTTCTGCAGGCTGTACAGGAAACATaGCTGGGAAGGCCTCAGGAAACACAATTATGGTGGAAGGCGAAG +
Preference number: 5 (lower is better)
Translates to: NIQNRQIVLQAVQET*LGRPQETQLWWKAK
Trigger: CTTCGCCTTCCACCATAATTGTGTTTCCTGAGGCCTTCCCAGCCATGTTTCCTGTACAGCCTGCAGAACTATTTGCCTGTTCTGGATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000627971.1
CDS GCA 72 bp TCCCTGCTAACTCAGGCTCCTTCCACCTCTTCACCCTaGCTCTCCCCAGTGGTGGCCACCCCCAGCTGCAAG +
Preference number: 6 (lower is better)
Translates to: SLLTQAPSTSSP*LSPVVATPSCK
Trigger: CTTGCAGCTGGGGGTGGCCACCACTGGGGAGAGGCAGGGTGAAGAGGTGGAAGGAGCCTGAGTTAGCAGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000455309.2
CDS GCA 72 bp TCACCCTGCCTCTCCCCAGTGGTGGCCACCCCCAGCTaGAAGGGCGATAACACACATGGAGTTGTTCTAGGA +
Preference number: 6 (lower is better)
Translates to: SPCLSPVVATPS*KGDNTHGVVLG
Trigger: TCCTAGAACAACTCCATGTGTGTTATCGCCCTTGCAGCTGGGGGTGGCCACCACTGGGGAGAGGCAGGGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000455309.2
CDS CAA 72 bp CAGGGGGTGCATGGCAGTCTCTCAGTAGTGTGCAACTaGGCCTTTCTCGACCCAGAAGCTCAAGGCGGTGGG +
Preference number: 6 (lower is better)
Translates to: QGVHGSLSVVCN*AFLDPEAQGGG
Trigger: CCCACCGCCTTGAGCTTCTGGGTCGAGAAAGGCCAAGTTGCACACTACTGAGAGACTGCCATGCACCCCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000455309.2
CDS GCA 72 bp ATCCAGAGGATAGTGGGTCTGGGGTTACCTGGCCACTaGTCATCCCTGCTAACTCAGGCTCCTTCCACCTCT +
Preference number: 6 (lower is better)
Translates to: IQRIVGLGLPGH*SSLLTQAPSTS
Trigger: AGAGGTGGAAGGAGCCTGAGTTAGCAGGGATGAGCAGTGGCCAGGTAACCCCAGACCCACTATCCTCTGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000455309.2
CDS CCA 72 bp ACATGGCTGGGAAGGCCTCAGGAAACACAATTATGGTaGAAGGCGAAGGGGAAGCAGGAATATTCAAGGCGG +
Preference number: 6 (lower is better)
Translates to: TWLGRPQETQLW*KAKGKQEYSRR
Trigger: CCGCCTTGAATATTCCTGCTTCCCCTTCGCCTTCCACCATAATTGTGTTTCCTGAGGCCTTCCCAGCCATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000627971.1
CDS CCA 72 bp GAAACATGGCTGGGAAGGCCTCAGGAAACACAATTATaGTGGAAGGCGAAGGGGAAGCAGGAATATTCAAGG +
Preference number: 6 (lower is better)
Translates to: ETWLGRPQETQL*WKAKGKQEYSR
Trigger: CCTTGAATATTCCTGCTTCCCCTTCGCCTTCCACCATAATTGTGTTTCCTGAGGCCTTCCCAGCCATGTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000627971.1
CDS CAA 90 bp TGCAAGGGCGATAACACACATGGAGTTGTTCTAGGAAGAATTATTTaGTGCCCAGCTGAAAATCAGGGGCTTGATTATCAGGGAAGGGGG +
Preference number: 6 (lower is better)
Translates to: CKGDNTHGVVLGRII*CPAENQGLDYQGRG
Trigger: CCCCCTTCCCTGATAATCAAGCCCCTGATTTTCAGCTGGGCACAAAATAATTCTTCCTAGAACAACTCCATGTGTGTTATCGCCCTTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000455309.2