Pregenerated sensors for SNX6 (Homo sapiens)
Ensembl gene IDs: ENSG00000129515Ensembl transcript IDs: ENST00000362031.10, ENST00000396526.7, ENST00000555416.6, ENST00000555648.1, ENST00000556162.6, ENST00000557341.6, ENST00000652385.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | CCAGAAGCTAGGGCTCTCGGTCCAGCATTCATCCACTaGTGGACATCACATGGGCTTATTTTTACCAGCGAA | + |
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Preference number: 3 (lower is better) Translates to: PEARALGPAFIH*WTSHGLIFTSE Trigger: TTCGCTGGTAAAAATAAGCCCATGTGATGTCCACCAGTGGATGAATGCTGGACCGAGAGCCCTAGCTTCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000362031.10 ENST00000396526.7 ENST00000652385.1 |
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| 3UTR TCA 72 bp | GAGTACCAACATTTATTAATCCTCACAACACCCCTGTaGGGTAGGTCAGTATGTCCTTTAGAGTCGAGAACT | + |
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Preference number: 3 (lower is better) Translates to: EYQHLLILTTPL*GRSVCPLESRT Trigger: AGTTCTCGACTCTAAAGGACATACTGACCTACCTCACAGGGGTGTTGTGAGGATTAATAAATGTTGGTACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000362031.10 ENST00000396526.7 ENST00000652385.1 |
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| CDS-3UTR GCA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGCCAGGCCATCATGGCTaGTCCGAGGCGAGGGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: KYSQQTSRTNDGRSLISVPGHHG*SEARAG Trigger: GCCGGCCCTCGCCTCGGAGCAGCCATGATGGCCTGG...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556162.6 |
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| CDS-3UTR GCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCGCCTTCCATCATGGCTaGTCCGAGGCGAGGGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLIAFHHG*SEARAG Trigger: GCCGGCCCTCGCCTCGGAGCAGCCATGATGGAAGGC...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000557341.6 |
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| CDS-3UTR TCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCCGCGGTCCTCTTCTaGGAGGAAGTCCGGGCCGTC | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLISAVLF*EEVRAV Trigger: GACGGCCCGGACTTCCTCTCAGAAGAGGACCGCGGA...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000555416.6 ENST00000556162.6 ENST00000557341.6 |
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| CDS-3UTR CCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCCCAGGCCTTCCATCATaGCTGCTCCGAGGCGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLIPGLPS*LLRGEG Trigger: GCCCTCGCCTCGGAGCAGCCATGATGGAAGGCCTGG...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000557341.6 |
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| CDS-3UTR CCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCACGGCACACAGACTaGCATCGCCTGGGCGTGCGC | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLISRHTD*HRLGVR Trigger: GCGCACGCCCAGGCGATGCCAGTCTGTGTGCCGTGA...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556162.6 |
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| CDS-3UTR CCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCGTCCAGGCCATCATaGCTGCTCCGAGGCGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLISSRPS*LLRGEG Trigger: GCCCTCGCCTCGGAGCAGCCATGATGGCCTGGACGA...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556162.6 |
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| CDS-3UTR TCA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGATGACGAGTGCACGATaGTGGACCACTGTCATGGGG | + |
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Preference number: 4 (lower is better) Translates to: KYSQQTSRTNDGRSLISVMTSAR*WTTVMG Trigger: CCCCATGACAGTGGTCCATCATCGTGCACTCGTCAT...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556162.6 |
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| CDS-3UTR GCA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGCGCCTGGGCGTGCGCTaGTCCATGTTTCTCAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: KYSQQTSRTNDGRSLISVRLGVR*SMFLRK Trigger: TTTTCTGAGAAACATGGAGCAGCGCACGCCCAGGCG...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556162.6 |
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| CDS-3UTR TCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCAACCAGCAGGACCAATaGTGGGAGAAGTTTGATCTC | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLINQQDQ*WEKFDL Trigger: GAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTT...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000555416.6 ENST00000556162.6 ENST00000557341.6 |
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| CDS-3UTR GCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCATCAGGTCTTGGTGGTaGTGGTGGAATCTTTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLIIRSWW*WWNLCV Trigger: CACACAAAGATTCCACCAGCACCACCAAGACCTGAT...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557341.6 |
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| CDS-3UTR CCA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGAGGTCTTGGTGGTGCTaGTGGAATGATATAACCTGC | + |
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Preference number: 4 (lower is better) Translates to: KYSQQTSRTNDGRSLISVRSWWC*WNDITC Trigger: GCAGGTTATATCATTCCACCAGCACCACCAAGACCT...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000556162.6 |
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| CDS-3UTR CCA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGAGGTCTTGGTGGTGCTaGTGGAATCTTTGTGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: KYSQQTSRTNDGRSLISVRSWWC*WNLCVN Trigger: GTTCACACAAAGATTCCACCAGCACCACCAAGACCT...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557341.6 |
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| CDS-3UTR TCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCGTGGTGCTGGTGGAATaGTATAACCTGCATAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLIVVLVE*YNLHSL Trigger: AAGACTATGCAGGTTATATCATTCCACCAGCACCAC...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000556162.6 |
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| CDS-3UTR CCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTTGGTGGTGCTGGTaGAATCTTTGTGTGAACAGT | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLISWWCW*NLCVNS Trigger: ACTGTTCACACAAAGATTCCACCAGCACCACCAAGA...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557341.6 |
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| CDS-3UTR TCA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGCAGAAAAAGAGGAGTTaGTGCACTTTTTCAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: KYSQQTSRTNDGRSLISVQKKRS*CTFSAA Trigger: AGCAGCTGAAAAAGTGCATCAACTCCTCTTTTTCTG...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000556162.6 |
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| CDS-3UTR CCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTTGGTGGTGCTGGTaGAATGATATAACCTGCATA | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLISWWCW*NDITCI Trigger: TATGCAGGTTATATCATTCCACCAGCACCACCAAGA...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000556162.6 |
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| CDS-3UTR GCA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGAAGATCTACATTTATTaGTTTAAGTCCGCGGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: KYSQQTSRTNDGRSLISVKIYIY*FKSAVL Trigger: GAGGACCGCGGACTTAAAGCAATAAATGTAGATCTT...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000555416.6 ENST00000556162.6 ENST00000557341.6 |
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| CDS-3UTR GCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCAAGATCTACATTTATTaGTTTAAGTCCGCGGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLIKIYIY*FKSAVL Trigger: GAGGACCGCGGACTTAAAGCAATAAATGTAGATCTT...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000555416.6 ENST00000556162.6 ENST00000557341.6 |
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| CDS-3UTR GCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCATAAATTCCTCATGTTaGCGAACAACTGAAAACTCG | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLIINSSC*RTTENS Trigger: CGAGTTTTCAGTTGTTCGGCAACATGAGGAATTTAT...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000556162.6 |
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| CDS-3UTR GCA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGATAAATTCCTCATGTTaGCGAACAACTGAAAACTCG | + |
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Preference number: 4 (lower is better) Translates to: KYSQQTSRTNDGRSLISVINSSC*RTTENS Trigger: CGAGTTTTCAGTTGTTCGGCAACATGAGGAATTTAT...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000556162.6 |
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| CDS-3UTR GCA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCATCAGATTTAGCAGATaGATCCTTAACTCGGTTATG | + |
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Preference number: 4 (lower is better) Translates to: IAKYSQQTSRTNDGRSLIIRFSR*ILNSVM Trigger: CATAACCGAGTTAAGGATGCATCTGCTAAATCTGAT...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000556162.6 |
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| CDS-3UTR GCA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGTCTATTGTAATCATCTaGAGCACTTTTGTGGGATCT | + |
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Preference number: 4 (lower is better) Translates to: KYSQQTSRTNDGRSLISVSIVII*STFVGS Trigger: AGATCCCACAAAAGTGCTGCAGATGATTACAATAGA...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000556162.6 |
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| CDS-3UTR GCA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGAGAAATGTTCGTTCGTaGTCAAAGAAATCATCTACA | + |
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Preference number: 4 (lower is better) Translates to: KYSQQTSRTNDGRSLISVRNVRS*SKKSST Trigger: TGTAGATGATTTCTTTGAGCACGAACGAACATTTCT...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000556162.6 |
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| CDS TCA 90 bp | AGACAGAAGGGTGGGCGGGAGCAAGTTCGAGATGTCCACACCGGGTaGAAATTGAGGGTGCCGCTGGGAAGGTCCGAGAATGGGTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: RQKGGREQVRDVHTG*KLRVPLGRSENGFS Trigger: TGAAAACCCATTCTCGGACCTTCCCAGCGGCACCCTCAATTTTCACCCGGTGTGGACATCTCGAACTTGCTCCCGCCCACCCTTCTGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555648.1 |
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| CDS-3UTR CAA 90 bp | ATTGCCAAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCATCTGCAGCACTTTaGTGGGATCTTGTCATTCTA | + |
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Preference number: 5 (lower is better) Translates to: IAKYSQQTSRTNDGRSLISSAAL*WDLVIL Trigger: TAGAATGACAAGATCCCACAAAAGTGCTGCAGATGA...GATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTTGGCAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555416.6 ENST00000556162.6 |
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| CDS-3UTR CAA 90 bp | AAATATTCACAGCAAACCAGCAGGACCAATGATGGGAGAAGTTTGATCTCTGTGACTGTAGATTACCCTTaGCATGCTTCAGTTCTAACT | + |
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Preference number: 5 (lower is better) Translates to: KYSQQTSRTNDGRSLISVTVDYP*HASVLT Trigger: AGTTAGAACTGAAGCATGCAAAGGGTAATCTACAGT...CACAGAGATCAAACTTCTCCCATCATTGGTCCTGCTGGTTTGCTGTGAATATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556162.6 |
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| CDS TCA 72 bp | GGGAGCAAGTTCGAGATGTCCACACCGGGTGAAAATTaGGGGTGCCGCTGGGAAGGTCCGAGAATGGGTTTT | + |
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Preference number: 6 (lower is better) Translates to: GSKFEMSTPGEN*GCRWEGPRMGF Trigger: AAAACCCATTCTCGGACCTTCCCAGCGGCACCCTCAATTTTCACCCGGTGTGGACATCTCGAACTTGCTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555648.1 |
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