Pregenerated sensors for SNX3 (Homo sapiens)
Ensembl gene IDs: ENSG00000112335Ensembl transcript IDs: ENST00000230085.13, ENST00000349379.5, ENST00000368979.6, ENST00000426155.6
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGTGCAGTATTGGAAACCAATGGTGTAGTGCTCCTACACATAAATaGGGTCAAGTGACATCACAAATTAAAAGGGGGAAAGAGAAATAT | + |
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Preference number: 1 (lower is better) Translates to: VCSIGNQWCSAPTHK*GQVTSQIKRGKEKY Trigger: ATATTTCTCTTTCCCCCTTTTAATTTGTGATGTCACTTGACCCCATTTATGTGTAGGAGCACTACACCATTGGTTTCCAATACTGCACAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000230085.13 ENST00000368979.6 ENST00000426155.6 |
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| 3UTR-3UTR TCA 90 bp | TTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTATAAACTGCTCCAGCCCCCTCTAAAAGGAAGCTaGCGCAAAAACGCTTTCCCA | + |
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Preference number: 2 (lower is better) Translates to: FVLCQRMTSDLVYKLLQPPLKGS*RKNAFP Trigger: TGGGAAAGCGTTTTTGCGTCAGCTTCCTTTTAGAGG...GGGCTGGAGCAGTTTATAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| 3UTR CCA 72 bp | ATTGGAAACCAATGGTGTAGTGCTCCTACACATAAATaGGGTCAAGTGACATCACAAATTAAAAGGGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: IGNQWCSAPTHK*GQVTSQIKRGK Trigger: TTTCCCCCTTTTAATTTGTGATGTCACTTGACCCCATTTATGTGTAGGAGCACTACACCATTGGTTTCCAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000230085.13 ENST00000368979.6 ENST00000426155.6 |
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| 3UTR TCA 72 bp | GTTAAAAATACCCCATTCAATGGATGGAAGTATATTTaGTATCACCACTGTTTAAAGGGAATGGAGTTACAG | + |
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Preference number: 3 (lower is better) Translates to: VKNTPFNGWKYI*YHHCLKGMELQ Trigger: CTGTAACTCCATTCCCTTTAAACAGTGGTGATATCAAATATACTTCCATCCATTGAATGGGGTATTTTTAAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000230085.13 |
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| CDS-3UTR GCA 90 bp | TTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTATAAACTGCTCCAGCCCCCGACCCCCACCGTTTaGGGGTTGCTCACATCGATC | + |
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Preference number: 4 (lower is better) Translates to: FVLCQRMTSDLVYKLLQPPTPTV*GLLTSI Trigger: GATCGATGTGAGCAACCCGCAAACGGTGGGGGTCGG...GGGCTGGAGCAGTTTATAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR TCA 90 bp | ACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTACTGCGGACTGGGGTGTaGGGAGAAGCGGTGTCATGG | + |
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Preference number: 4 (lower is better) Translates to: TCEDNVRSVPEDDQRPCLLRTGV*GEAVSW Trigger: CCATGACACCGCTTCTCCTCACACCCCAGTCCGCAG...TAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR CCA 90 bp | ACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTAAAACGGCTCACTAGCTaGAACGCCACGCCCGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: TCEDNVRSVPEDDQRPCLKRLTS*NATPGS Trigger: GGAGCCGGGCGTGGCGTTCCAGCTAGTGAGCCGTTT...TAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR TCA 90 bp | TTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTATAAACTGCTCCAGCCCCACCACGTCCTTCCATaGCTCCTTGCCTCTGATGTC | + |
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Preference number: 4 (lower is better) Translates to: FVLCQRMTSDLVYKLLQPHHVLP*LLASDV Trigger: GACATCAGAGGCAAGGAGTCATGGAAGGACGTGGTG...GGGCTGGAGCAGTTTATAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR CCA 90 bp | CTTGTAAAAACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGAAGGGGCACTGCGGACTaGGGTGTGAGGAGAAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: LVKTCEDNVRSVPEDDQRRGTAD*GVRRSG Trigger: ACCGCTTCTCCTCACACCCCAGTCCGCAGTGCCCCT...TCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGTTTTTACAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR TCA 90 bp | ACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTACCTCTGATGTCATTCTaGGGCAGGGCTTGCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: TCEDNVRSVPEDDQRPCLPLMSF*GRACSL Trigger: GAGAGAGCAAGCCCTGCCTCAGAATGACATCAGAGG...TAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR GCA 90 bp | ACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTACCACCGTTTGCGGGTTaGTCACATCGATCTCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: TCEDNVRSVPEDDQRPCLPPFAG*SHRSRG Trigger: TCCTCGAGATCGATGTGAGCAACCCGCAAACGGTGG...TAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR CCA 90 bp | CTTGTAAAAACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGAGGAGAAGCGGTGTCATaGGACTCGGGGTCGCAAACA | + |
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Preference number: 4 (lower is better) Translates to: LVKTCEDNVRSVPEDDQRGEAVS*DSGSQT Trigger: TGTTTGCGACCCCGAGTCCCATGACACCGCTTCTCC...TCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGTTTTTACAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR TCA 90 bp | TTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTATAAACTGCTCCAGCCCTTCTGTGCCAGAGGATaGCCAGCGACCTTGTTTATA | + |
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Preference number: 4 (lower is better) Translates to: FVLCQRMTSDLVYKLLQPFCARG*PATLFI Trigger: TATAAACAAGGTCGCTGGTCATCCTCTGGCACAGAA...GGGCTGGAGCAGTTTATAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR TCA 90 bp | CTTGTAAAAACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGAATGACTCCTTGCCTCTaGTGTCATTCTGAGGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: LVKTCEDNVRSVPEDDQRMTPCL*CHSEAG Trigger: CCCTGCCTCAGAATGACATCAGAGGCAAGGAGTCAT...TCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGTTTTTACAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR TCA 90 bp | TTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTATAAACTGCTCCAGCCCAACTTTTCATCATTCTaGGCACACCACGTCCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: FVLCQRMTSDLVYKLLQPNFSSF*AHHVLP Trigger: TGGAAGGACGTGGTGTGCTCAGAATGATGAAAAGTT...GGGCTGGAGCAGTTTATAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR GCA 90 bp | CTTGTAAAAACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGAACAACGTTCGTTCTGTaGCAGAGGATGACCAGCGAC | + |
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Preference number: 4 (lower is better) Translates to: LVKTCEDNVRSVPEDDQRTTFVL*QRMTSD Trigger: GTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGT...TCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGTTTTTACAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR CCA 90 bp | TTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTATAAACTGCTCCAGCCCGCTCCTACACATAAATaGGGTCAAGTGACATCACAA | + |
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Preference number: 4 (lower is better) Translates to: FVLCQRMTSDLVYKLLQPAPTHK*GQVTSQ Trigger: TTGTGATGTCACTTGACCCCATTTATGTGTAGGAGC...GGGCTGGAGCAGTTTATAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR TCA 90 bp | TTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTATAAACTGCTCCAGCCCATAAATGGGGTCAAGTaGCATCACAAATTAAAAGGG | + |
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Preference number: 4 (lower is better) Translates to: FVLCQRMTSDLVYKLLQPINGVK*HHKLKG Trigger: CCCTTTTAATTTGTGATGTCACTTGACCCCATTTAT...GGGCTGGAGCAGTTTATAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR CCA 90 bp | ACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTAAGTATTGGAAACCAATaGTGTAGTGCTCCTACACAT | + |
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Preference number: 4 (lower is better) Translates to: TCEDNVRSVPEDDQRPCLSIGNQ*CSAPTH Trigger: ATGTGTAGGAGCACTACACCATTGGTTTCCAATACT...TAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR GCA 90 bp | ACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTAACCTTGTTTATAAACTaGTCCAGCCCTTGTTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TCEDNVRSVPEDDQRPCLTLFIN*SSPCFL Trigger: AAGAAAACAAGGGCTGGAGCAGTTTATAAACAAGGT...TAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR TCA 90 bp | CTTGTAAAAACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGATCTTGTAAAAACATGTaGAGACAACGTTCGTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: LVKTCEDNVRSVPEDDQRSCKNM*RQRSFC Trigger: ACAGAACGAACGTTGTCTTCACATGTTTTTACAAGA...TCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGTTTTTACAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR GCA 90 bp | ACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTAGAGGAAGATACTTTCTaGACACAAGTATGTATCTTA | + |
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Preference number: 4 (lower is better) Translates to: TCEDNVRSVPEDDQRPCLEEDTF*TQVCIL Trigger: TAAGATACATACTTGTGTGCAGAAAGTATCTTCCTC...TAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS CCA 90 bp | GCCCCCTCCGCGTTCAGCCGCCGCCGCCGCCGCTGCTGCCCGCCGTaGGGACACGGGGCTCGCGCGCAGCGGTCGCGAAGAGAACGAGCA | + |
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Preference number: 5 (lower is better) Translates to: APSAFSRRRRRCCPP*GHGARAQRSRRERA Trigger: TGCTCGTTCTCTTCGCGACCGCTGCGCGCGAGCCCCGTGTCCCCACGGCGGGCAGCAGCGGCGGCGGCGGCGGCTGAACGCGGAGGGGGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000349379.5 ENST00000368979.6 |
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| CDS-3UTR CAA 90 bp | TTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTATAAACTGCTCCAGCCCCCCACCGTTTGCGGGTaGCTCACATCGATCTCGAGG | + |
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Preference number: 5 (lower is better) Translates to: FVLCQRMTSDLVYKLLQPPTVCG*LTSISR Trigger: CCTCGAGATCGATGTGAGCAACCCGCAAACGGTGGG...GGGCTGGAGCAGTTTATAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAA 56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR CAA 90 bp | CTTGTAAAAACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGAGCCGACCCCCACCGTTaGCGGGTTGCTCACATCGAT | + |
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Preference number: 5 (lower is better) Translates to: LVKTCEDNVRSVPEDDQRADPHR*RVAHID Trigger: ATCGATGTGAGCAACCCGCAAACGGTGGGGGTCGGC...TCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGTTTTTACAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR CAA 90 bp | ACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTAATTCTGAGGCAGGGCTaGCTCTCTCTTTCTAATTCA | + |
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Preference number: 5 (lower is better) Translates to: TCEDNVRSVPEDDQRPCLILRQG*LSLSNS Trigger: TGAATTAGAAAGAGAGAGCAAGCCCTGCCTCAGAAT...TAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR CAA 90 bp | TTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTATAAACTGCTCCAGCCCTTAATAGTCACGTTTTaGCCCCTTCTTGCCAAATTT | + |
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Preference number: 5 (lower is better) Translates to: FVLCQRMTSDLVYKLLQPLIVTF*PLLAKF Trigger: AAATTTGGCAAGAAGGGGCAAAAACGTGACTATTAA...GGGCTGGAGCAGTTTATAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS-3UTR CAA 90 bp | ACATGTGAAGACAACGTTCGTTCTGTGCCAGAGGATGACCAGCGACCTTGTTTACTTATGTGTGCAGTATaGGAAACCAATGGTGTAGTG | + |
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Preference number: 5 (lower is better) Translates to: TCEDNVRSVPEDDQRPCLLMCAV*ETNGVV Trigger: CACTACACCATTGGTTTCCAATACTGCACACATAAG...TAAACAAGGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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| CDS TCA 72 bp | CTGAGCACACCACGTCCTTCCATGACTCCTTGCCTCTaGTGTCATTCTGAGGCAGGGCTTGCTCTCTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LSTPRPSMTPCL*CHSEAGLALSF Trigger: GAAAGAGAGAGCAAGCCCTGCCTCAGAATGACATCAGAGGCAAGGAGTCATGGAAGGACGTGGTGTGCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368979.6 |
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