RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SNX12 (Homo sapiens)

Ensembl gene IDs: ENSG00000147164

Ensembl transcript IDs: ENST00000276105.3, ENST00000374274.8, ENST00000465030.1, ENST00000483560.1, ENST00000490561.6, ENST00000622259.4, ENST00000622277.4

Found 222 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AACATTGGCGAGGTGGGAAAGGGAGCAGAGCCTCTCATTAGGGGCTaGTTAGCCCCTGGCGCAGGCTCAGCAGCTGGAGAGCTGTCTCAG +
Preference number: 1 (lower is better)
Translates to: NIGEVGKGAEPLIRG*LAPGAGSAAGELSQ
Trigger: CTGAGACAGCTCTCCAGCTGCTGAGCCTGCGCCAGGGGCTAAGCAGCCCCTAATGAGAGGCTCTGCTCCCTTTCCCACCTCGCCAATGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR GCA 90 bp CCTGTGGGTTCCCACCTCTCCTCAGAGAAGAGGATCCTAGCAGAGTaGCCACATGGTGTAGTCAGGTACCAGGGAGCACAATGCCAGACA +
Preference number: 1 (lower is better)
Translates to: PVGSHLSSEKRILAE*PHGVVRYQGAQCQT
Trigger: TGTCTGGCATTGTGCTCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAGGATCCTCTTCTCTGAGGAGAGGTGGGAACCCACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR GCA 90 bp CTAGCAGAGTGCCCACATGGTGTAGTCAGGTACCAGGGAGCACAATaGCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGA +
Preference number: 1 (lower is better)
Translates to: LAECPHGVVRYQGAQ*QTVYQARRWAANFR
Trigger: TCTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 90 bp TTCCCACCTCTCCTCAGAGAAGAGGATCCTAGCAGAGTGCCCACATaGTGTAGTCAGGTACCAGGGAGCACAATGCCAGACAGTCTATCA +
Preference number: 1 (lower is better)
Translates to: FPPLLREEDPSRVPT*CSQVPGSTMPDSLS
Trigger: TGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAGGATCCTCTTCTCTGAGGAGAGGTGGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 90 bp ACAAAGGGAGAGGGGCTAGGCAATAGGAGCTCCCCTACTGCCCTATaGCTTTCTTCTGACTCTGAAGCAGCCATAATGATGGGCCCAGAA +
Preference number: 1 (lower is better)
Translates to: TKGEGLGNRSSPTAL*LSSDSEAAIMMGPE
Trigger: TTCTGGGCCCATCATTATGGCTGCTTCAGAGTCAGAAGAAAGCCATAGGGCAGTAGGGGAGCTCCTATTGCCTAGCCCCTCTCCCTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 90 bp TGGGCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTaGACTCTAGGAGGATTACTGCCATGGAAAGCAACAAGGGAGAGA +
Preference number: 1 (lower is better)
Translates to: WAQKTHTPCSIQQTA*TLGGLLPWKATRER
Trigger: TCTCTCCCTTGTTGCTTTCCATGGCAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR GCA 90 bp ATGATGGGCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTaGTTGGACTCTAGGAGGATTACTGCCATGGAAAGCAACAAGGGA +
Preference number: 1 (lower is better)
Translates to: MMGPENPHTLLHTTD*LDSRRITAMESNKG
Trigger: TCCCTTGTTGCTTTCCATGGCAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGCCCATCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR GCA 90 bp GTGCTTAGGAGAAGTCAGAGACTGTGTGGTTGGTTTGTGTGCTTCTaGCCTGTGGCAGCACTAAATGGGATGGGGGAAAGGAGAATGGAA +
Preference number: 1 (lower is better)
Translates to: VLRRSQRLCGWFVCF*PVAALNGMGERRME
Trigger: TTCCATTCTCCTTTCCCCCATCCCATTTAGTGCTGCCACAGGGCAGAAGCACACAAACCAACCACACAGTCTCTGACTTCTCCTAAGCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR GCA 90 bp CTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTGCCCTaGATAGAAAACTCCAATCTTTCCATGATAGGGAGTCTAAGCAAA +
Preference number: 1 (lower is better)
Translates to: LIRVSQNQQSFSTVP*IENSNLSMIGSLSK
Trigger: TTTGCTTAGACTCCCTATCATGGAAAGATTGGAGTTTTCTATGCAGGGCACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 90 bp GGCTCAGCAGCTGGAGAGCTGTCTCAGGGAACTTCAACATTTAGATaGGTTCCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGAT +
Preference number: 1 (lower is better)
Translates to: GSAAGELSQGTSTFR*VPNPMSKYNPNLSD
Trigger: ATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGGAACCCATCTAAATGTTGAAGTTCCCTGAGACAGCTCTCCAGCTGCTGAGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CCA 90 bp TCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCCACCAAACCGGGAGGGAGAACTGCTaGCCCATACTGACTCACCAG +
Preference number: 2 (lower is better)
Translates to: SGSYLAVVSCPHPSSHQTGRENC*PILTHQ
Trigger: CTGGTGAGTCAGTATGGGCCAGCAGTTCTCCCTCCC...GGTTTGGTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR TCA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGAACTGGGAGCAGGCCTaGAGAAAACAAGGAAAGCTT +
Preference number: 2 (lower is better)
Translates to: LPPFRELPGSGELPPPLKNWEQA*RKQGKL
Trigger: AAGCTTTCCTTGTTTTCTTCAGGCCTGCTCCCAGTT...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CCA 90 bp TTGATGCCCTTCCCTACCGCGGGTAAGAGCCTAGAAGATAATCCACTCCCACCCGGGAGGGAGAACTGCTaGCCCATACTGACTCACCAG +
Preference number: 2 (lower is better)
Translates to: LMPFPTAGKSLEDNPLPPGRENC*PILTHQ
Trigger: CTGGTGAGTCAGTATGGGCCAGCAGTTCTCCCTCCC...GGGTGGGAGTGGATTATCTTCTAGGCTCTTACCCGCGGTAGGGAAGGGCATCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp TCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCCACCAAACCAAAACCCACACACCCTaGTCCATACAACAGACTGCT +
Preference number: 2 (lower is better)
Translates to: SGSYLAVVSCPHPSSHQTKTHTP*SIQQTA
Trigger: AGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTT...GGTTTGGTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR TCA 90 bp TCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCCACCAAACCAACAAGGAAAGCTTCTaGGTCTCTACCACCTTTCCA +
Preference number: 2 (lower is better)
Translates to: SGSYLAVVSCPHPSSHQTNKESF*VSTTFP
Trigger: TGGAAAGGTGGTAGAGACTCAGAAGCTTTCCTTGTT...GGTTTGGTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp TTGATGCCCTTCCCTACCGCGGGTAAGAGCCTAGAAGATAATCCACTCCCACCCCAGTATGTATCCAAGTaGCTCACCAGCACAAGCGCC +
Preference number: 2 (lower is better)
Translates to: LMPFPTAGKSLEDNPLPPQYVSK*LTSTSA
Trigger: GGCGCTTGTGCTGGTGAGGCACTTGGATACATACTG...GGGTGGGAGTGGATTATCTTCTAGGCTCTTACCCGCGGTAGGGAAGGGCATCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp AATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTGCCCTGCTGGCAGTGGTGAGTTaGCCCCACCCCTCAAGCCAC +
Preference number: 2 (lower is better)
Translates to: NLSDQGQSESAILFHSALLAVVS*PHPSSH
Trigger: GTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAG...CAGGGCACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR TCA 90 bp TCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCCACCAAACCGTAAGAAAAATCCCCTaGACTTGCAGCATCAGTATG +
Preference number: 2 (lower is better)
Translates to: SGSYLAVVSCPHPSSHQTVRKIP*TCSISM
Trigger: CATACTGATGCTGCAAGTTCAGGGGATTTTTCTTAC...GGTTTGGTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR TCA 90 bp AAGCCCCGAGTCAGGATATATATACACAGCAGAAATGGGGCCTCAGACTCTCAGGAAGGAAGACAGTGTTaGTGCCCTTCCCTACCGCGG +
Preference number: 2 (lower is better)
Translates to: KPRVRIYIHSRNGASDSQEGRQC*CPSLPR
Trigger: CCGCGGTAGGGAAGGGCATCAACACTGTCTTCCTTC...CTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATATATATCCTGACTCGGGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp CAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGAGGACAAGCAAAGGGCATCTaGCTGTGGGTTCCCACCTCT +
Preference number: 2 (lower is better)
Translates to: QKTHTPCSIQQTAWTLGGQAKGI*LWVPTS
Trigger: AGAGGTGGGAACCCACAGGCAGATGCCCTTTGCTTG...TCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CAA 90 bp ATGGGCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTaGGACTCTAGGAGGATTACTGCCATGGAAAGCAACAAGGGAGAG +
Preference number: 2 (lower is better)
Translates to: MGPENPHTLLHTTDC*DSRRITAMESNKGE
Trigger: CTCTCCCTTGTTGCTTTCCATGGCAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CCA 90 bp AAGCCCCGAGTCAGGATATATATACACAGCAGAAATGGGGCCTCAGACTCTCAGAGCAGAGTGCCCACATaGTGTAGTCAGGTACCAGGG +
Preference number: 2 (lower is better)
Translates to: KPRVRIYIHSRNGASDSQSRVPT*CSQVPG
Trigger: CCCTGGTACCTGACTACACCATGTGGGCACTCTGCT...CTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATATATATCCTGACTCGGGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CCA 90 bp TCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCACCACAGAGACTGTGTGGTTaGTTTGTGTGCTTCTGCCCT +
Preference number: 2 (lower is better)
Translates to: SFHDRESKQRAPTSHLAPQRLCG*FVCFCP
Trigger: AGGGCAGAAGCACACAAACCAACCACACAGTCTCTG...TGGTGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp TTGATGCCCTTCCCTACCGCGGGTAAGAGCCTAGAAGATAATCCACTCCCACCCCTCCATACAACAGACTaGTTGGACTCTAGGAGGATT +
Preference number: 2 (lower is better)
Translates to: LMPFPTAGKSLEDNPLPPLHTTD*LDSRRI
Trigger: AATCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAG...GGGTGGGAGTGGATTATCTTCTAGGCTCTTACCCGCGGTAGGGAAGGGCATCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CAA 90 bp AGCACTAAATGGGATGGGGGAAAGGAGAATGGAAGGAAGACAGTGTaGATGCCCTTCCCTACCGCGGGTAAGAGCCTAGAAGATAATCCA +
Preference number: 2 (lower is better)
Translates to: STKWDGGKENGRKTV*MPFPTAGKSLEDNP
Trigger: TGGATTATCTTCTAGGCTCTTACCCGCGGTAGGGAAGGGCATCAACACTGTCTTCCTTCCATTCTCCTTTCCCCCATCCCATTTAGTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp AATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTGCCCTGAGGATCCTAGCAGAGTaGCCACATGGTGTAGTCAGG +
Preference number: 2 (lower is better)
Translates to: NLSDQGQSESAILFHSALRILAE*PHGVVR
Trigger: CCTGACTACACCATGTGGGCACTCTGCTAGGATCCT...CAGGGCACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp ACAAATCAAAAAGGCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGCAGTATGTATCCAAGTaGCTCACCAGCACAAGCGCC +
Preference number: 2 (lower is better)
Translates to: TNQKGSNNNIGEVGKGAEQYVSK*LTSTSA
Trigger: GGCGCTTGTGCTGGTGAGGCACTTGGATACATACTG...CTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGCCTTTTTGATTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp CAATCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCAAAAACCCACACACCCTaGTCCATACAACAGACTGCT +
Preference number: 2 (lower is better)
Translates to: QSFHDRESKQRAPTSHLAKTHTP*SIQQTA
Trigger: AGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTT...TGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGATTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CCA 90 bp CAATCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCATCCCCTACTGCCCTATaGCTTTCTTCTGACTCTGAA +
Preference number: 2 (lower is better)
Translates to: QSFHDRESKQRAPTSHLASPTAL*LSSDSE
Trigger: TTCAGAGTCAGAAGAAAGCCATAGGGCAGTAGGGGA...TGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGATTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp CAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGAGGATCTGGCATGGGTAAATaGCCAAGAAATTGCCTTCCA +
Preference number: 2 (lower is better)
Translates to: QKTHTPCSIQQTAWTLGGSGMGK*PRNCLP
Trigger: TGGAAGGCAATTTCTTGGGCATTTACCCATGCCAGA...TCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp ACCAAGCTGCTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGTTAGGGAGGGAGAACTaGTGGCCCATACTGACTCAC +
Preference number: 2 (lower is better)
Translates to: TKLLSIVQLLGKMLELHELGREN*WPILTH
Trigger: GTGAGTCAGTATGGGCCAGCAGTTCTCCCTCCCTAA...CTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAGCAGCTTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CCA 90 bp ACCAAGCTGCTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGAATAGGCAGCTAGAGTaGGAGCCACAAAGGGAGAGG +
Preference number: 2 (lower is better)
Translates to: TKLLSIVQLLGKMLELHENRQLE*EPQRER
Trigger: CCTCTCCCTTTGTGGCTCCCACTCTAGCTGCCTATT...CTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAGCAGCTTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp ACAAATCAAAAAGGCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGTGGTTTGTGTGCTTCTaGCCTGTGGCAGCACTAAAT +
Preference number: 2 (lower is better)
Translates to: TNQKGSNNNIGEVGKGAEWFVCF*PVAALN
Trigger: ATTTAGTGCTGCCACAGGGCAGAAGCACACAAACCA...CTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGCCTTTTTGATTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp AAGCCCCGAGTCAGGATATATATACACAGCAGAAATGGGGCCTCAGACTCTCAGGGAAAATGCTGGAGTTaGATGAGAAACAAGTGCAGG +
Preference number: 2 (lower is better)
Translates to: KPRVRIYIHSRNGASDSQGKCWS*MRNKCR
Trigger: CCTGCACTTGTTTCTCATGCAACTCCAGCATTTTCC...CTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATATATATCCTGACTCGGGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CCA 90 bp CAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGAGGAGTTAGCCTTCTGGCATaGGTAAATGCCCAAGAAATT +
Preference number: 2 (lower is better)
Translates to: QKTHTPCSIQQTAWTLGGVSLLA*VNAQEI
Trigger: AATTTCTTGGGCATTTACCCATGCCAGAAGGCTAAC...TCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CCA 90 bp ACAAATCAAAAAGGCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGGGAGGATTACTGCCATaGAAAGCAACAAGGGAGAGA +
Preference number: 2 (lower is better)
Translates to: TNQKGSNNNIGEVGKGAEGGLLP*KATRER
Trigger: TCTCTCCCTTGTTGCTTTCCATGGCAGTAATCCTCC...CTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGCCTTTTTGATTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp CAGCAGCTGGAGAGCTGTCTCAGGGAACTTCAACATTTAGATGGGTTCCAAATCGGCAGGGTTTTTCCCTaGTCAGTGTTCTTGGTTAAA +
Preference number: 2 (lower is better)
Translates to: QQLESCLRELQHLDGFQIGRVFP*SVFLVK
Trigger: TTTAACCAAGAACACTGAGCAGGGAAAAACCCTGCC...GATTTGGAACCCATCTAAATGTTGAAGTTCCCTGAGACAGCTCTCCAGCTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CCA 90 bp AAGCCCCGAGTCAGGATATATATACACAGCAGAAATGGGGCCTCAGACTCTCAGATACAACAGACTGCTTaGACTCTAGGAGGATTACTG +
Preference number: 2 (lower is better)
Translates to: KPRVRIYIHSRNGASDSQIQQTA*TLGGLL
Trigger: CAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTAT...CTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATATATATCCTGACTCGGGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp ACAAATCAAAAAGGCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGTTTTCCACAGTGCCCTaGATAGAAAACTCCAATCTT +
Preference number: 2 (lower is better)
Translates to: TNQKGSNNNIGEVGKGAEFSTVP*IENSNL
Trigger: AAGATTGGAGTTTTCTATGCAGGGCACTGTGGAAAA...CTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGCCTTTTTGATTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp TGGGTTCCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGTGGTTTGTGTGCTTCTaGCCTGTGGCAGCACTAAAT +
Preference number: 2 (lower is better)
Translates to: WVPNPMSKYNPNLSDQGQWFVCF*PVAALN
Trigger: ATTTAGTGCTGCCACAGGGCAGAAGCACACAAACCA...CTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGGAACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR GCA 90 bp TGGGTTCCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGGGAAAATGCTGGAGTTaGATGAGAAACAAGTGCAGG +
Preference number: 2 (lower is better)
Translates to: WVPNPMSKYNPNLSDQGQGKCWS*MRNKCR
Trigger: CCTGCACTTGTTTCTCATGCAACTCCAGCATTTTCC...CTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGGAACCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR TCA 72 bp TCCACTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTaGGTTGCCCCCACCCCTCAAGCCACCAAACCTGCA +
Preference number: 3 (lower is better)
Translates to: STPTLQGVTWQW*VAPTPQATKPA
Trigger: TGCAGGTTTGGTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAGTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CAA 90 bp AATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTGCCCTGCTCTCACCCCACCACTaGGGACAGACGTTGGGCCCC +
Preference number: 3 (lower is better)
Translates to: NLSDQGQSESAILFHSALLSPHH*GQTLGP
Trigger: GGGGCCCAACGTCTGTCCCAAGTGGTGGGGTGAGAG...CAGGGCACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 72 bp CTGGCACCAAAGTTAACTTACTCTCACCCCACCACTTaGGACAGACGTTGGGCCCCAGCAAACAAACCACCC +
Preference number: 3 (lower is better)
Translates to: LAPKLTYSHPTT*DRRWAPANKPP
Trigger: GGGTGGTTTGTTTGCTGGGGCCCAACGTCTGTCCCAAGTGGTGGGGTGAGAGTAAGTTAACTTTGGTGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 72 bp GGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATaGGCAGCCAACTTCAGATCAAAGACAGAGAGAGGC +
Preference number: 3 (lower is better)
Translates to: GAQCQTVYQARR*AANFRSKTERG
Trigger: GCCTCTCTCTGTCTTTGATCTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CAA 90 bp AAGCCCCGAGTCAGGATATATATACACAGCAGAAATGGGGCCTCAGACTCTCAGGGAAGGAAGACAGTGTaGATGCCCTTCCCTACCGCG +
Preference number: 3 (lower is better)
Translates to: KPRVRIYIHSRNGASDSQGRKTV*MPFPTA
Trigger: CGCGGTAGGGAAGGGCATCAACACTGTCTTCCTTCC...CTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATATATATCCTGACTCGGGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 72 bp GAGGGGCTAGGCAATAGGAGCTCCCCTACTGCCCTATaGCTTTCTTCTGACTCTGAAGCAGCCATAATGATG +
Preference number: 3 (lower is better)
Translates to: EGLGNRSSPTAL*LSSDSEAAIMM
Trigger: CATCATTATGGCTGCTTCAGAGTCAGAAGAAAGCCATAGGGCAGTAGGGGAGCTCCTATTGCCTAGCCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR GCA 72 bp CCAGAAAACCCACACACCCTGCTCCATACAACAGACTaGTTGGACTCTAGGAGGATTACTGCCATGGAAAGC +
Preference number: 3 (lower is better)
Translates to: PENPHTLLHTTD*LDSRRITAMES
Trigger: GCTTTCCATGGCAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 72 bp CAAATCAAAAAGGCAGCAACAACAACATTGGCGAGGTaGGAAAGGGAGCAGAGCCTCTCATTAGGGGCTGCT +
Preference number: 3 (lower is better)
Translates to: QIKKAATTTLAR*EREQSLSLGAA
Trigger: AGCAGCCCCTAATGAGAGGCTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGCCTTTTTGATTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CAA 90 bp TCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCACCACCCTGCTCAGTGTTCTaGGTTAAACCTAAGAGTAAG +
Preference number: 3 (lower is better)
Translates to: SFHDRESKQRAPTSHLAPPCSVF*VKPKSK
Trigger: CTTACTCTTAGGTTTAACCAAGAACACTGAGCAGGG...TGGTGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR-3UTR CAA 90 bp AAGCCCCGAGTCAGGATATATATACACAGCAGAAATGGGGCCTCAGACTCTCAGGGGAAAATGCTGGAGTaGCATGAGAAACAAGTGCAG +
Preference number: 3 (lower is better)
Translates to: KPRVRIYIHSRNGASDSQGKMLE*HEKQVQ
Trigger: CTGCACTTGTTTCTCATGCAACTCCAGCATTTTCCC...CTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATATATATCCTGACTCGGGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 72 bp AAAACCCACACACCCTGCTCCATACAACAGACTGCTTaGACTCTAGGAGGATTACTGCCATGGAAAGCAACA +
Preference number: 3 (lower is better)
Translates to: KTHTPCSIQQTA*TLGGLLPWKAT
Trigger: TGTTGCTTTCCATGGCAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 72 bp AAAGCCCCGAGTCAGGATATATATACACAGCAGAAATaGGGCCTCAGACTCTCAGCACTTGTGCACAATGAA +
Preference number: 3 (lower is better)
Translates to: KAPSQDIYTQQK*GLRLSALVHNE
Trigger: TTCATTGTGCACAAGTGCTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATATATATCCTGACTCGGGGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR GCA 72 bp ACAAACCACCCCCTCCAAGACAGAAACCAGGATAGTTaGCAGCCTCAAGAAGCTGCTTCAAATGTTAAGATT +
Preference number: 3 (lower is better)
Translates to: TNHPLQDRNQDS*QPQEAASNVKI
Trigger: AATCTTAACATTTGAAGCAGCTTCTTGAGGCTGGCAACTATCCTGGTTTCTGTCTTGGAGGGGGTGGTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CCA 72 bp GCTGGAGAGCTGTCTCAGGGAACTTCAACATTTAGATaGGTTCCAAATCCTATGTCAAAATACAATCCTAAT +
Preference number: 3 (lower is better)
Translates to: AGELSQGTSTFR*VPNPMSKYNPN
Trigger: ATTAGGATTGTATTTTGACATAGGATTTGGAACCCATCTAAATGTTGAAGTTCCCTGAGACAGCTCTCCAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGGGGCTGCTTAGCCCCTaGCGCAGGCTCAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: LPPFRELPGSGELPPPLKGLLSP*RRLSSW
Trigger: CCAGCTGCTGAGCCTGCGCCAGGGGCTAAGCAGCCC...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp GTCAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCATGGGGGACAGAGGCCTaGGGCAGGAGCGCGCACGGC +
Preference number: 4 (lower is better)
Translates to: VRYQGAQCQTVYQARRWAWGTEA*GRSAHG
Trigger: GCCGTGCGCGCTCCTGCCTCAGGCCTCTGTCCCCCA...TGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000276105.3
CDS-3UTR CCA 90 bp CAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCGAGAGGGGCTCCTACTaGCGCACCTTCCCCGGGACG +
Preference number: 4 (lower is better)
Translates to: QVPGSTMPDSLSGQEMGSERGSY*RTFPGT
Trigger: CGTCCCGGGGAAGGTGCGCCAGTAGGAGCCCCTCTC...GCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGAGGCAGCGTTCATTCTaGGCCAGTGGGTGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: LPPFRELPGSGELPPPLKRQRSF*ASGCPA
Trigger: TGCTGGGCACCCACTGGCTCAGAATGAACGCTGCCT...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp GTCAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGAGAGGGGCTCCTACTaGCGCACCTTCCCCGGGACG +
Preference number: 4 (lower is better)
Translates to: VRYQGAQCQTVYQARRWAERGSY*RTFPGT
Trigger: CGTCCCGGGGAAGGTGCGCCAGTAGGAGCCCCTCTC...TGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAGCGTCGGTCAGGTCCTaGGGCTTCGAGTTAAGGCGC +
Preference number: 4 (lower is better)
Translates to: GTREHNARQSIRPGDGQPASVRS*GFELRR
Trigger: GCGCCTTAACTCGAAGCCGCAGGACCTGACCGACGC...TGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCCCACGCCCACCGTCTaGGGATTAAAGATGTCGATC +
Preference number: 4 (lower is better)
Translates to: LPPFRELPGSGELPPPLKPTPTV*GLKMSI
Trigger: GATCGACATCTTTAATCCTCAGACGGTGGGCGTGGG...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp CCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTTTGTCTCATAGGTGGTaGAGCGCGCGCGTCCCACGC +
Preference number: 4 (lower is better)
Translates to: PGSTMPDSLSGQEMGSQLLSHRW*SARVPR
Trigger: GCGTGGGACGCGCGCGCTTCACCACCTATGAGACAA...AAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000276105.3
CDS-3UTR TCA 90 bp TCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCCACCAAACCAGTTCAATAACCCTGTaGCCACGCTGGGGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: SGSYLAVVSCPHPSSHQTSSITL*PRWGGQ
Trigger: CTGCCCTCCCCAGCGTGGTCACAGGGTTATTGAACT...GGTTTGGTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp TCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCACCAGGGCTGCTTAGCCCCTaGCGCAGGCTCAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: SFHDRESKQRAPTSHLAPGLLSP*RRLSSW
Trigger: CCAGCTGCTGAGCCTGCGCCAGGGGCTAAGCAGCCC...TGGTGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCAGCAACAACAACATTaGCGAGGTGGGAAAGGGAGC +
Preference number: 4 (lower is better)
Translates to: LPPFRELPGSGELPPPLKQQQQH*RGGKGS
Trigger: GCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTG...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp CAATCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCAGAACCTCATAGGTGGTaGAGCGCGCGCGTCCCACGC +
Preference number: 4 (lower is better)
Translates to: QSFHDRESKQRAPTSHLAEPHRW*SARVPR
Trigger: GCGTGGGACGCGCGCGCTTCACCACCTATGAGGTTC...TGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGATTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCACCGGGTATCAGCTACTaGCGTGTCCGACATCTTTCC +
Preference number: 4 (lower is better)
Translates to: GTREHNARQSIRPGDGQPPGISY*RVRHLS
Trigger: GGAAAGATGTCGGACACGGCAGTAGCTGATACCCGG...TGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAAGCAAAGGGCATCTaGCTGTGGGTTCCCACCTCT +
Preference number: 4 (lower is better)
Translates to: QVPGSTMPDSLSGQEMGSQAKGI*LWVPTS
Trigger: AGAGGTGGGAACCCACAGGCAGATGCCCTTTGCTTG...GCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AGGATCCTAGCAGAGTGCCCACATGGTGTAGTCAGGTACCAGGGAGCACAATGCTCTCACCCCACCACTTaGGACAGACGTTGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: RILAECPHGVVRYQGAQCSHPTT*DRRWAP
Trigger: TGGGGCCCAACGTCTGTCCCAAGTGGTGGGGTGAGA...GCATTGTGCTCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAGGATCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCACAACATTGGCGAGGTaGGAAAGGGAGCAGAGCCTC +
Preference number: 4 (lower is better)
Translates to: RYQGAQCQTVYQARRWAATTLAR*EREQSL
Trigger: GAGGCTCTGCTCCCTTTCCCACCTCGCCAATGTTGT...GGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp ACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGATCAAAGAACCTCATAGGTGGTaGAGCGCGCGCGTCCCACGC +
Preference number: 4 (lower is better)
Translates to: TMPDSLSGQEMGSQLQIKEPHRW*SARVPR
Trigger: GCGTGGGACGCGCGCGCTTCACCACCTATGAGGTTC...TTTGATCTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGAGGAGCGTCGGTCAGGTCCTaGGGCTTCGAGTTAAGGCGC +
Preference number: 4 (lower is better)
Translates to: QKTHTPCSIQQTAWTLGGASVRS*GFELRR
Trigger: GCGCCTTAACTCGAAGCCGCAGGACCTGACCGACGC...TCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAGGATCCTAGCAGAGTaGCCACATGGTGTAGTCAGG +
Preference number: 4 (lower is better)
Translates to: RYQGAQCQTVYQARRWAARILAE*PHGVVR
Trigger: CCTGACTACACCATGTGGGCACTCTGCTAGGATCCT...GGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCTTAGGGAGGGAGAACTaGTGGCCCATACTGACTCAC +
Preference number: 4 (lower is better)
Translates to: RYQGAQCQTVYQARRWAALGREN*WPILTH
Trigger: GTGAGTCAGTATGGGCCAGCAGTTCTCCCTCCCTAA...GGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGGGAGGATTACTGCCATaGAAAGCAACAAGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: LPPFRELPGSGELPPPLKGGLLP*KATRER
Trigger: TCTCTCCCTTGTTGCTTTCCATGGCAGTAATCCTCC...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp GTTAACTTACTCTCACCCCACCACTTGGGACAGACGTTGGGCCCCAGCAAACAACGCAGGCTCAGCAGCTaGAGAGCTGTCTCAGGGAAC +
Preference number: 4 (lower is better)
Translates to: VNLLSPHHLGQTLGPSKQRRLSS*RAVSGN
Trigger: GTTCCCTGAGACAGCTCTCCAGCTGCTGAGCCTGCG...TTGTTTGCTGGGGCCCAACGTCTGTCCCAAGTGGTGGGGTGAGAGTAAGTTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp GCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGACGCAGGCTCAGCAGCTaGAGAGCTGTCTCAGGGAAC +
Preference number: 4 (lower is better)
Translates to: AQKTHTPCSIQQTAWTLGRRLSS*RAVSGN
Trigger: GTTCCCTGAGACAGCTCTCCAGCTGCTGAGCCTGCG...TCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp AGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCACCCACGCCCACCGTCTaGGGATTAAAGATGTCGATC +
Preference number: 4 (lower is better)
Translates to: REHNARQSIRPGDGQPTSPTPTV*GLKMSI
Trigger: GATCGACATCTTTAATCCTCAGACGGTGGGCGTGGG...TGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp GCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGAGAAGGAAGACAGTGTTaGTGCCCTTCCCTACCGCGG +
Preference number: 4 (lower is better)
Translates to: AQKTHTPCSIQQTAWTLGEGRQC*CPSLPR
Trigger: CCGCGGTAGGGAAGGGCATCAACACTGTCTTCCTTC...TCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAAACTGCTCGAGGCCCTaGCTCCTTTCTTCGATGAAA +
Preference number: 4 (lower is better)
Translates to: GTREHNARQSIRPGDGQPNCSRP*LLSSMK
Trigger: TTTCATCGAAGAAAGGAGGCAGGGCCTCGAGCAGTT...TGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCAACTGCTCGAGGCCCTaGCTCCTTTCTTCGATGAAA +
Preference number: 4 (lower is better)
Translates to: QVPGSTMPDSLSGQEMGSNCSRP*LLSSMK
Trigger: TTTCATCGAAGAAAGGAGGCAGGGCCTCGAGCAGTT...GCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCTCCATACAACAGACTaGTTGGACTCTAGGAGGATT +
Preference number: 4 (lower is better)
Translates to: LPPFRELPGSGELPPPLKLHTTD*LDSRRI
Trigger: AATCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAG...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGTTAGGGAGGGAGAACTaGTGGCCCATACTGACTCAC +
Preference number: 4 (lower is better)
Translates to: GSTMPDSLSGQEMGSQLQLGREN*WPILTH
Trigger: GTGAGTCAGTATGGGCCAGCAGTTCTCCCTCCCTAA...CTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCGGCTTTCCCAGGCAGTaGTGGTACTACAATCTTGCT +
Preference number: 4 (lower is better)
Translates to: RYQGAQCQTVYQARRWAAGFPRQ*WYYNLA
Trigger: AGCAAGATTGTAGTACCACCACTGCCTGGGAAAGCC...GGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp GCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGCCTCTCATTAGGGAGCAGAGTGCCCACATaGTGTAGTCAGGTACCAGGG +
Preference number: 4 (lower is better)
Translates to: AATTTLARWEREQSLSLGSRVPT*CSQVPG
Trigger: CCCTGGTACCTGACTACACCATGTGGGCACTCTGCT...CCCTAATGAGAGGCTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp CAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCGCCTCCTTTCTTCGATaGAAGACTCCTCAAAGATCC +
Preference number: 4 (lower is better)
Translates to: QVPGSTMPDSLSGQEMGSASFLR*KTPQRS
Trigger: GGATCTTTGAGGAGTCTTTCATCGAAGAAAGGAGGC...GCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp ACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGATCAAAAGGCAGCGTTCATTCTaGGCCAGTGGGTGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: TMPDSLSGQEMGSQLQIKRQRSF*ASGCPA
Trigger: TGCTGGGCACCCACTGGCTCAGAATGAACGCTGCCT...TTTGATCTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp GGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAAATGCTGGAGTTGCATaGGAAACAAGTGCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: GTREHNARQSIRPGDGQPNAGVA*ETSAGS
Trigger: ACTGCCTGCACTTGTTTCTCATGCAACTCCAGCATT...TGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCATCAATTGCCTCCTCTTaGAGGAACATGTGTAGGCAG +
Preference number: 4 (lower is better)
Translates to: GTREHNARQSIRPGDGQPSIASS*RNMCRQ
Trigger: CTGCCTACACATGTTCCTGCAAGAGGAGGCAATTGA...TGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCACAGTATGTATCCAAGTaGCTCACCAGCACAAGCGCC +
Preference number: 4 (lower is better)
Translates to: REHNARQSIRPGDGQPTSQYVSK*LTSTSA
Trigger: GGCGCTTGTGCTGGTGAGGCACTTGGATACATACTG...TGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp TCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCCACCAAACCGGCAGGGTTTTTCCCTaGTCAGTGTTCTTGGTTAAA +
Preference number: 4 (lower is better)
Translates to: SGSYLAVVSCPHPSSHQTGRVFP*SVFLVK
Trigger: TTTAACCAAGAACACTGAGCAGGGAAAAACCCTGCC...GGTTTGGTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGGACTCTCAGCACTTGTaGACAATGAAAGAGGAAATC +
Preference number: 4 (lower is better)
Translates to: LPPFRELPGSGELPPPLKDSQHL*TMKEEI
Trigger: GATTTCCTCTTTCATTGTGCACAAGTGCTGAGAGTC...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp GGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGGGCTTTCCCAGGCAGTaGTGGTACTACAATCTTGCT +
Preference number: 4 (lower is better)
Translates to: GSTMPDSLSGQEMGSQLQGFPRQ*WYYNLA
Trigger: AGCAAGATTGTAGTACCACCACTGCCTGGGAAAGCC...CTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
3UTR CAA 72 bp TGGGATGGGGGAAAGGAGAATGGAAGGAAGACAGTGTaGATGCCCTTCCCTACCGCGGGTAAGAGCCTAGAA +
Preference number: 4 (lower is better)
Translates to: WDGGKENGRKTV*MPFPTAGKSLE
Trigger: TTCTAGGCTCTTACCCGCGGTAGGGAAGGGCATCAACACTGTCTTCCTTCCATTCTCCTTTCCCCCATCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp CCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTGCCTCCTTTCTTCGATaGAAGACTCCTCAAAGATCC +
Preference number: 4 (lower is better)
Translates to: PGSTMPDSLSGQEMGSQLASFLR*KTPQRS
Trigger: GGATCTTTGAGGAGTCTTTCATCGAAGAAAGGAGGC...AAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp CAGCAGCTGGAGAGCTGTCTCAGGGAACTTCAACATTTAGATGGGTTCCAAATCAGGCAGCGTTCATTCTaGGCCAGTGGGTGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: QQLESCLRELQHLDGFQIRQRSF*ASGCPA
Trigger: TGCTGGGCACCCACTGGCTCAGAATGAACGCTGCCT...GATTTGGAACCCATCTAAATGTTGAAGTTCCCTGAGACAGCTCTCCAGCTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAAACTGCTCGAGGCCCTaGCTCCTTTCTTCGATGAAA +
Preference number: 4 (lower is better)
Translates to: REHNARQSIRPGDGQPTSNCSRP*LLSSMK
Trigger: TTTCATCGAAGAAAGGAGGCAGGGCCTCGAGCAGTT...TGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GTCAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCATCAATTGCCTCCTCTTaGAGGAACATGTGTAGGCAG +
Preference number: 4 (lower is better)
Translates to: VRYQGAQCQTVYQARRWASIASS*RNMCRQ
Trigger: CTGCCTACACATGTTCCTGCAAGAGGAGGCAATTGA...TGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCGTAGTTCCTGTCAATTaGCTCCTCTTGCAGGAACAT +
Preference number: 4 (lower is better)
Translates to: RYQGAQCQTVYQARRWAAVVPVN*LLLQEH
Trigger: ATGTTCCTGCAAGAGGAGGCAATTGACAGGAACTAC...GGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp ACCAAGCTGCTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGCCTCTCATTAGGGGCTaGTTAGCCCCTGGCGCAGGC +
Preference number: 4 (lower is better)
Translates to: TKLLSIVQLLGKMLELHEPLIRG*LAPGAG
Trigger: GCCTGCGCCAGGGGCTAAGCAGCCCCTAATGAGAGG...CTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAGCAGCTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGTCCGACTCGATGTTATaGAACCATACTGAAAAGAAC +
Preference number: 4 (lower is better)
Translates to: LPPFRELPGSGELPPPLKSDSML*NHTEKN
Trigger: GTTCTTTTCAGTATGGTTGCATAACATCGAGTCGGA...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000622277.4
CDS-3UTR CCA 90 bp ACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGATCAAACTCCAGGAAGTTACTTaGCGGCCCGTAAGCGTCGGT +
Preference number: 4 (lower is better)
Translates to: TMPDSLSGQEMGSQLQIKLQEVT*RPVSVG
Trigger: ACCGACGCTTACGGGCCGCCAAGTAACTTCCTGGAG...TTTGATCTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp GGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCATTTCCCAGGCAGTGGTaGTACTACAATCTTGCTATC +
Preference number: 4 (lower is better)
Translates to: GTREHNARQSIRPGDGQPFPRQW*YYNLAI
Trigger: GATAGCAAGATTGTAGTACCACCACTGCCTGGGAAA...TGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp TCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCACCAAATAGGCAGCTAGAGTaGGAGCCACAAAGGGAGAGG +
Preference number: 4 (lower is better)
Translates to: SFHDRESKQRAPTSHLAPNRQLE*EPQRER
Trigger: CCTCTCCCTTTGTGGCTCCCACTCTAGCTGCCTATT...TGGTGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AGGATCCTAGCAGAGTGCCCACATGGTGTAGTCAGGTACCAGGGAGCACAATGCCAGAGACTGTGTGGTTaGTTTGTGTGCTTCTGCCCT +
Preference number: 4 (lower is better)
Translates to: RILAECPHGVVRYQGAQCQRLCG*FVCFCP
Trigger: AGGGCAGAAGCACACAAACCAACCACACAGTCTCTG...GCATTGTGCTCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAGGATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGAGGAACAACATTGGCGAGGTaGGAAAGGGAGCAGAGCCTC +
Preference number: 4 (lower is better)
Translates to: QKTHTPCSIQQTAWTLGGTTLAR*EREQSL
Trigger: GAGGCTCTGCTCCCTTTCCCACCTCGCCAATGTTGT...TCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp GCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGACAGCAACAACAACATTaGCGAGGTGGGAAAGGGAGC +
Preference number: 4 (lower is better)
Translates to: AQKTHTPCSIQQTAWTLGQQQQH*RGGKGS
Trigger: GCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTG...TCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp ACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGATCAAACCCACGCCCACCGTCTaGGGATTAAAGATGTCGATC +
Preference number: 4 (lower is better)
Translates to: TMPDSLSGQEMGSQLQIKPTPTV*GLKMSI
Trigger: GATCGACATCTTTAATCCTCAGACGGTGGGCGTGGG...TTTGATCTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp GCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGCCTCTCATTAGGGAACTGGGAGCAGGCCTaGAGAAAACAAGGAAAGCTT +
Preference number: 4 (lower is better)
Translates to: AATTTLARWEREQSLSLGNWEQA*RKQGKL
Trigger: AAGCTTTCCTTGTTTTCTTCAGGCCTGCTCCCAGTT...CCCTAATGAGAGGCTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAATTTTGTTAATAAACTaGTCGAGGCCCTGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: GTREHNARQSIRPGDGQPILLIN*SRPCLL
Trigger: AAGGAGGCAGGGCCTCGAGCAGTTTATTAACAAAAT...TGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCATTTTGTTAATAAACTaGTCGAGGCCCTGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: QVPGSTMPDSLSGQEMGSILLIN*SRPCLL
Trigger: AAGGAGGCAGGGCCTCGAGCAGTTTATTAACAAAAT...GCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CAATCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCACAGTATGTATCCAAGTaGCTCACCAGCACAAGCGCC +
Preference number: 4 (lower is better)
Translates to: QSFHDRESKQRAPTSHLAQYVSK*LTSTSA
Trigger: GGCGCTTGTGCTGGTGAGGCACTTGGATACATACTG...TGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp TCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCCACCAAACCTTCAACAACTCAAAGTaGTTAGGAGAAGTCAGAGAC +
Preference number: 4 (lower is better)
Translates to: SGSYLAVVSCPHPSSHQTFNNSK*LGEVRD
Trigger: GTCTCTGACTTCTCCTAAGCACTTTGAGTTGTTGAA...GGTTTGGTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp TTGATGCCCTTCCCTACCGCGGGTAAGAGCCTAGAAGATAATCCACTCCCACCCAGAAACCAGGATAGTTaGCAGCCTCAAGAAGCTGCT +
Preference number: 4 (lower is better)
Translates to: LMPFPTAGKSLEDNPLPPRNQDS*QPQEAA
Trigger: AGCAGCTTCTTGAGGCTGGCAACTATCCTGGTTTCT...GGGTGGGAGTGGATTATCTTCTAGGCTCTTACCCGCGGTAGGGAAGGGCATCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAGACTCTCAGCACTTGTaGACAATGAAAGAGGAAATC +
Preference number: 4 (lower is better)
Translates to: GTREHNARQSIRPGDGQPDSQHL*TMKEEI
Trigger: GATTTCCTCTTTCATTGTGCACAAGTGCTGAGAGTC...TGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CAGCAGCTGGAGAGCTGTCTCAGGGAACTTCAACATTTAGATGGGTTCCAAATCCTCCAGGAAGTTACTTaGCGGCCCGTAAGCGTCGGT +
Preference number: 4 (lower is better)
Translates to: QQLESCLRELQHLDGFQILQEVT*RPVSVG
Trigger: ACCGACGCTTACGGGCCGCCAAGTAACTTCCTGGAG...GATTTGGAACCCATCTAAATGTTGAAGTTCCCTGAGACAGCTCTCCAGCTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp GCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGAGGCTTTCCCAGGCAGTaGTGGTACTACAATCTTGCT +
Preference number: 4 (lower is better)
Translates to: AQKTHTPCSIQQTAWTLGGFPRQ*WYYNLA
Trigger: AGCAAGATTGTAGTACCACCACTGCCTGGGAAAGCC...TCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTGCCCTGGGGAGGGAGAACTGCTaGCCCATACTGACTCACCAG +
Preference number: 4 (lower is better)
Translates to: NLSDQGQSESAILFHSALGRENC*PILTHQ
Trigger: CTGGTGAGTCAGTATGGGCCAGCAGTTCTCCCTCCC...CAGGGCACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp GTTAACTTACTCTCACCCCACCACTTGGGACAGACGTTGGGCCCCAGCAAACAAAACTGGGAGCAGGCCTaGAGAAAACAAGGAAAGCTT +
Preference number: 4 (lower is better)
Translates to: VNLLSPHHLGQTLGPSKQNWEQA*RKQGKL
Trigger: AAGCTTTCCTTGTTTTCTTCAGGCCTGCTCCCAGTT...TTGTTTGCTGGGGCCCAACGTCTGTCCCAAGTGGTGGGGTGAGAGTAAGTTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTGCCCTGCCGGGTATCAGCTACTaGCGTGTCCGACATCTTTCC +
Preference number: 4 (lower is better)
Translates to: NLSDQGQSESAILFHSALPGISY*RVRHLS
Trigger: GGAAAGATGTCGGACACGGCAGTAGCTGATACCCGG...CAGGGCACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGCTGGCAGTGGTGAGTTaGCCCCACCCCTCAAGCCAC +
Preference number: 4 (lower is better)
Translates to: LSIVQLLGKMLELHEKQVLAVVS*PHPSSH
Trigger: GTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAG...CACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp TCAGAGAAGAGGATCCTAGCAGAGTGCCCACATGGTGTAGTCAGGTACCAGGGATGGTTTGTGTGCTTCTaGCCTGTGGCAGCACTAAAT +
Preference number: 4 (lower is better)
Translates to: SEKRILAECPHGVVRYQGWFVCF*PVAALN
Trigger: ATTTAGTGCTGCCACAGGGCAGAAGCACACAAACCA...TCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAGGATCCTCTTCTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AATCCTAATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTCCTCTCATTAGGGGCTaGTTAGCCCCTGGCGCAGGC +
Preference number: 4 (lower is better)
Translates to: NPNLSDQGQSESAILFHSPLIRG*LAPGAG
Trigger: GCCTGCGCCAGGGGCTAAGCAGCCCCTAATGAGAGG...ACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATTAGGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGTCAGAAGAGAGGGGCTCCTACTaGCGCACCTTCCCCGGGACG +
Preference number: 4 (lower is better)
Translates to: PNPMSKYNPNLSDQGQSEERGSY*RTFPGT
Trigger: CGTCCCGGGGAAGGTGCGCCAGTAGGAGCCCCTCTC...TTCTGACTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp TCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCACCATCCCCTACTGCCCTATaGCTTTCTTCTGACTCTGAA +
Preference number: 4 (lower is better)
Translates to: SFHDRESKQRAPTSHLAPSPTAL*LSSDSE
Trigger: TTCAGAGTCAGAAGAAAGCCATAGGGCAGTAGGGGA...TGGTGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp TCAGAGAAGAGGATCCTAGCAGAGTGCCCACATGGTGTAGTCAGGTACCAGGGATGTGGCAGCACTAAATaGGATGGGGGAAAGGAGAAT +
Preference number: 4 (lower is better)
Translates to: SEKRILAECPHGVVRYQGCGSTK*DGGKEN
Trigger: ATTCTCCTTTCCCCCATCCCATTTAGTGCTGCCACA...TCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAGGATCCTCTTCTCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp GCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGATGTGGCAGCACTAAATaGGATGGGGGAAAGGAGAAT +
Preference number: 4 (lower is better)
Translates to: AQKTHTPCSIQQTAWTLGCGSTK*DGGKEN
Trigger: ATTCTCCTTTCCCCCATCCCATTTAGTGCTGCCACA...TCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AAGCCCCGAGTCAGGATATATATACACAGCAGAAATGGGGCCTCAGACTCTCAGACTTGGGACAGACGTTaGGCCCCAGCAAACAAACCA +
Preference number: 4 (lower is better)
Translates to: KPRVRIYIHSRNGASDSQTWDRR*APANKP
Trigger: TGGTTTGTTTGCTGGGGCCCAACGTCTGTCCCAAGT...CTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATATATATCCTGACTCGGGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp TTGATGCCCTTCCCTACCGCGGGTAAGAGCCTAGAAGATAATCCACTCCCACCCGTAAGAAAAATCCCCTaGACTTGCAGCATCAGTATG +
Preference number: 4 (lower is better)
Translates to: LMPFPTAGKSLEDNPLPPVRKIP*TCSISM
Trigger: CATACTGATGCTGCAAGTTCAGGGGATTTTTCTTAC...GGGTGGGAGTGGATTATCTTCTAGGCTCTTACCCGCGGTAGGGAAGGGCATCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp GCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGAAACAAGGAAAGCTTCTaGGTCTCTACCACCTTTCCA +
Preference number: 4 (lower is better)
Translates to: AQKTHTPCSIQQTAWTLGNKESF*VSTTFP
Trigger: TGGAAAGGTGGTAGAGACTCAGAAGCTTTCCTTGTT...TCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp AACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGCAGGCAGTTCAATAGTTCAATAACCCTGTaGCCACGCTGGGGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: NFWGKCWSCMRNKCRQFNSSITL*PRWGGQ
Trigger: CTGCCCTCCCCAGCGTGGTCACAGGGTTATTGAACT...ATTGAACTGCCTGCACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGAGTAGTTCCTGTCAATTaGCTCCTCTTGCAGGAACAT +
Preference number: 4 (lower is better)
Translates to: AQKTHTPCSIQQTAWTLGVVPVN*LLLQEH
Trigger: ATGTTCCTGCAAGAGGAGGCAATTGACAGGAACTAC...TCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp TCAGAGAAGAGGATCCTAGCAGAGTGCCCACATGGTGTAGTCAGGTACCAGGGAGTAGTTCCTGTCAATTaGCTCCTCTTGCAGGAACAT +
Preference number: 4 (lower is better)
Translates to: SEKRILAECPHGVVRYQGVVPVN*LLLQEH
Trigger: ATGTTCCTGCAAGAGGAGGCAATTGACAGGAACTAC...TCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAGGATCCTCTTCTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp ACCAAGCTGCTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGCAAGCAAAGGGCATCTaGCTGTGGGTTCCCACCTCT +
Preference number: 4 (lower is better)
Translates to: TKLLSIVQLLGKMLELHEQAKGI*LWVPTS
Trigger: AGAGGTGGGAACCCACAGGCAGATGCCCTTTGCTTG...CTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAGCAGCTTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGTTCAACAACTCAAAGTaGTTAGGAGAAGTCAGAGAC +
Preference number: 4 (lower is better)
Translates to: GSTMPDSLSGQEMGSQLQFNNSK*LGEVRD
Trigger: GTCTCTGACTTCTCCTAAGCACTTTGAGTTGTTGAA...CTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AGGATCCTAGCAGAGTGCCCACATGGTGTAGTCAGGTACCAGGGAGCACAATGCATACAACAGACTGCTTaGACTCTAGGAGGATTACTG +
Preference number: 4 (lower is better)
Translates to: RILAECPHGVVRYQGAQCIQQTA*TLGGLL
Trigger: CAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTAT...GCATTGTGCTCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAGGATCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CAA 72 bp GAAAACCCACACACCCTGCTCCATACAACAGACTGCTaGGACTCTAGGAGGATTACTGCCATGGAAAGCAAC +
Preference number: 4 (lower is better)
Translates to: ENPHTLLHTTDC*DSRRITAMESN
Trigger: GTTGCTTTCCATGGCAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp AATCCTAATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTGAAGGAAGACAGTGTTaGTGCCCTTCCCTACCGCGG +
Preference number: 4 (lower is better)
Translates to: NPNLSDQGQSESAILFHSEGRQC*CPSLPR
Trigger: CCGCGGTAGGGAAGGGCATCAACACTGTCTTCCTTC...ACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATTAGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTGCTTGGACTCTAGGAATTTTGTTAATAAACTaGTCGAGGCCCTGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: AQKTHTPCSIQQTAWTLGILLIN*SRPCLL
Trigger: AAGGAGGCAGGGCCTCGAGCAGTTTATTAACAAAAT...TCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CAATCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCATCTGGCATGGGTAAATaGCCAAGAAATTGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: QSFHDRESKQRAPTSHLASGMGK*PRNCLP
Trigger: TGGAAGGCAATTTCTTGGGCATTTACCCATGCCAGA...TGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGCCTCTCATTAGGGTTTTCCACAGTGCCCTaGATAGAAAACTCCAATCTT +
Preference number: 4 (lower is better)
Translates to: AATTTLARWEREQSLSLGFSTVP*IENSNL
Trigger: AAGATTGGAGTTTTCTATGCAGGGCACTGTGGAAAA...CCCTAATGAGAGGCTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp GTCAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAACCTATTCATCTTCCTaGCCGTACATTTTTCTCAAA +
Preference number: 4 (lower is better)
Translates to: VRYQGAQCQTVYQARRWATYSSS*PYIFLK
Trigger: TTTGAGAAAAATGTACGGGCAGGAAGATGAATAGGT...TGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000622277.4
CDS-3UTR CCA 90 bp AACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGCAGGCAGTTCAATAGCAGAGTGCCCACATaGTGTAGTCAGGTACCAGGG +
Preference number: 4 (lower is better)
Translates to: NFWGKCWSCMRNKCRQFNSRVPT*CSQVPG
Trigger: CCCTGGTACCTGACTACACCATGTGGGCACTCTGCT...ATTGAACTGCCTGCACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AATCCTAATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTCCGGGTATCAGCTACTaGCGTGTCCGACATCTTTCC +
Preference number: 4 (lower is better)
Translates to: NPNLSDQGQSESAILFHSPGISY*RVRHLS
Trigger: GGAAAGATGTCGGACACGGCAGTAGCTGATACCCGG...ACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATTAGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp ACAAATCAAAAAGGCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGAAAACCCACACACCCTaGTCCATACAACAGACTGCT +
Preference number: 4 (lower is better)
Translates to: TNQKGSNNNIGEVGKGAEKTHTP*SIQQTA
Trigger: AGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTT...CTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGCCTTTTTGATTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp CAGCAGCTGGAGAGCTGTCTCAGGGAACTTCAACATTTAGATGGGTTCCAAATCAAAACCCACACACCCTaGTCCATACAACAGACTGCT +
Preference number: 4 (lower is better)
Translates to: QQLESCLRELQHLDGFQIKTHTP*SIQQTA
Trigger: AGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTT...GATTTGGAACCCATCTAAATGTTGAAGTTCCCTGAGACAGCTCTCCAGCTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CAATCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCAGTTAGCCTTCTGGCATaGGTAAATGCCCAAGAAATT +
Preference number: 4 (lower is better)
Translates to: QSFHDRESKQRAPTSHLAVSLLA*VNAQEI
Trigger: AATTTCTTGGGCATTTACCCATGCCAGAAGGCTAAC...TGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTGCCCTGTCCCCTACTGCCCTATaGCTTTCTTCTGACTCTGAA +
Preference number: 4 (lower is better)
Translates to: NLSDQGQSESAILFHSALSPTAL*LSSDSE
Trigger: TTCAGAGTCAGAAGAAAGCCATAGGGCAGTAGGGGA...CAGGGCACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp ACCAAGCTGCTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGCAGAGACTGTGTGGTTaGTTTGTGTGCTTCTGCCCT +
Preference number: 4 (lower is better)
Translates to: TKLLSIVQLLGKMLELHEQRLCG*FVCFCP
Trigger: AGGGCAGAAGCACACAAACCAACCACACAGTCTCTG...CTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAGCAGCTTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGTCAGAATCTCACCCCACCACTTaGGACAGACGTTGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: PNPMSKYNPNLSDQGQSESHPTT*DRRWAP
Trigger: TGGGGCCCAACGTCTGTCCCAAGTGGTGGGGTGAGA...TTCTGACTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp GGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGACTTCAACATTTAGATaGGTTCCAAATCCTATGTCA +
Preference number: 4 (lower is better)
Translates to: GSTMPDSLSGQEMGSQLQTSTFR*VPNPMS
Trigger: TGACATAGGATTTGGAACCCATCTAAATGTTGAAGT...CTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTACTTCAACATTTAGATaGGTTCCAAATCCTATGTCA +
Preference number: 4 (lower is better)
Translates to: PGSTMPDSLSGQEMGSQLTSTFR*VPNPMS
Trigger: TGACATAGGATTTGGAACCCATCTAAATGTTGAAGT...AAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp ACCAAGCTGCTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGGCCTCCTTTCTTCGATaGAAGACTCCTCAAAGATCC +
Preference number: 4 (lower is better)
Translates to: TKLLSIVQLLGKMLELHEASFLR*KTPQRS
Trigger: GGATCTTTGAGGAGTCTTTCATCGAAGAAAGGAGGC...CTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAGCAGCTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp ACAAATCAAAAAGGCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGTCTGGCATGGGTAAATaGCCAAGAAATTGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: TNQKGSNNNIGEVGKGAESGMGK*PRNCLP
Trigger: TGGAAGGCAATTTCTTGGGCATTTACCCATGCCAGA...CTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGCCTTTTTGATTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp ACAAATCAAAAAGGCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGGGCAGGGTTTTTCCCTaGTCAGTGTTCTTGGTTAAA +
Preference number: 4 (lower is better)
Translates to: TNQKGSNNNIGEVGKGAEGRVFP*SVFLVK
Trigger: TTTAACCAAGAACACTGAGCAGGGAAAAACCCTGCC...CTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGCCTTTTTGATTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp ACCAAGCTGCTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGAGAAACCAGGATAGTTaGCAGCCTCAAGAAGCTGCT +
Preference number: 4 (lower is better)
Translates to: TKLLSIVQLLGKMLELHERNQDS*QPQEAA
Trigger: AGCAGCTTCTTGAGGCTGGCAACTATCCTGGTTTCT...CTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAGCAGCTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGTCAGAACTCCAGGAAGTTACTTaGCGGCCCGTAAGCGTCGGT +
Preference number: 4 (lower is better)
Translates to: PNPMSKYNPNLSDQGQSELQEVT*RPVSVG
Trigger: ACCGACGCTTACGGGCCGCCAAGTAACTTCCTGGAG...TTCTGACTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp ACCAAGCTGCTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGGGAGGATTACTGCCATaGAAAGCAACAAGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: TKLLSIVQLLGKMLELHEGGLLP*KATRER
Trigger: TCTCTCCCTTGTTGCTTTCCATGGCAGTAATCCTCC...CTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAGCAGCTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AATCCTAATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTAATAGGCAGCTAGAGTaGGAGCCACAAAGGGAGAGG +
Preference number: 4 (lower is better)
Translates to: NPNLSDQGQSESAILFHSNRQLE*EPQRER
Trigger: CCTCTCCCTTTGTGGCTCCCACTCTAGCTGCCTATT...ACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATTAGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AATCCTAATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTACTTGGGACAGACGTTaGGCCCCAGCAAACAAACCA +
Preference number: 4 (lower is better)
Translates to: NPNLSDQGQSESAILFHSTWDRR*APANKP
Trigger: TGGTTTGTTTGCTGGGGCCCAACGTCTGTCCCAAGT...ACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATTAGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGCAGGCAGTTCAATTCAATTGCCTCCTCTTaGAGGAACATGTGTAGGCAG +
Preference number: 4 (lower is better)
Translates to: NFWGKCWSCMRNKCRQFNSIASS*RNMCRQ
Trigger: CTGCCTACACATGTTCCTGCAAGAGGAGGCAATTGA...ATTGAACTGCCTGCACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp TGGGTTCCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGAGGATCCTAGCAGAGTaGCCACATGGTGTAGTCAGG +
Preference number: 4 (lower is better)
Translates to: WVPNPMSKYNPNLSDQGQRILAE*PHGVVR
Trigger: CCTGACTACACCATGTGGGCACTCTGCTAGGATCCT...CTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGGAACCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AAGCCCCGAGTCAGGATATATATACACAGCAGAAATGGGGCCTCAGACTCTCAGTTTTCCACAGTGCCCTaGATAGAAAACTCCAATCTT +
Preference number: 4 (lower is better)
Translates to: KPRVRIYIHSRNGASDSQFSTVP*IENSNL
Trigger: AAGATTGGAGTTTTCTATGCAGGGCACTGTGGAAAA...CTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATATATATCCTGACTCGGGGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp AACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGCAGGCAGTTCAATTATACACAGCAGAAATaGGGCCTCAGACTCTCAGCA +
Preference number: 4 (lower is better)
Translates to: NFWGKCWSCMRNKCRQFNYTQQK*GLRLSA
Trigger: TGCTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATA...ATTGAACTGCCTGCACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp ACCAAGCTGCTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGGTAAGAAAAATCCCCTaGACTTGCAGCATCAGTATG +
Preference number: 4 (lower is better)
Translates to: TKLLSIVQLLGKMLELHEVRKIP*TCSISM
Trigger: CATACTGATGCTGCAAGTTCAGGGGATTTTTCTTAC...CTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAGCAGCTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR GCA 90 bp AACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGCAGGCAGTTCAATGGAAAATGCTGGAGTTaGATGAGAAACAAGTGCAGG +
Preference number: 4 (lower is better)
Translates to: NFWGKCWSCMRNKCRQFNGKCWS*MRNKCR
Trigger: CCTGCACTTGTTTCTCATGCAACTCCAGCATTTTCC...ATTGAACTGCCTGCACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGTATACACAGCAGAAATaGGGCCTCAGACTCTCAGCA +
Preference number: 4 (lower is better)
Translates to: LSIVQLLGKMLELHEKQVYTQQK*GLRLSA
Trigger: TGCTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATA...CACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGTTTCCCAGGCAGTGGTaGTACTACAATCTTGCTATC +
Preference number: 4 (lower is better)
Translates to: LSIVQLLGKMLELHEKQVFPRQW*YYNLAI
Trigger: GATAGCAAGATTGTAGTACCACCACTGCCTGGGAAA...CACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
3UTR CAA 72 bp TTGGTTAAACCTAAGAGTAAGAAAAATCCCCTGAACTaGCAGCATCAGTATGTATCCAAGTGCCTCACCAGC +
Preference number: 4 (lower is better)
Translates to: LVKPKSKKNPLN*QHQYVSKCLTS
Trigger: GCTGGTGAGGCACTTGGATACATACTGATGCTGCAAGTTCAGGGGATTTTTCTTACTCTTAGGTTTAACCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CTATCCATAGTTCAACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGGTTAGCCTTCTGGCATaGGTAAATGCCCAAGAAATT +
Preference number: 4 (lower is better)
Translates to: LSIVQLLGKMLELHEKQVVSLLA*VNAQEI
Trigger: AATTTCTTGGGCATTTACCCATGCCAGAAGGCTAAC...CACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTTGAACTATGGATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR TCA 90 bp CCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGTCAGAAAACAAGGAAAGCTTCTaGGTCTCTACCACCTTTCCA +
Preference number: 4 (lower is better)
Translates to: PNPMSKYNPNLSDQGQSENKESF*VSTTFP
Trigger: TGGAAAGGTGGTAGAGACTCAGAAGCTTTCCTTGTT...TTCTGACTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CCA 90 bp CCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGTCAGAAATACAACAGACTGCTTaGACTCTAGGAGGATTACTG +
Preference number: 4 (lower is better)
Translates to: PNPMSKYNPNLSDQGQSEIQQTA*TLGGLL
Trigger: CAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTAT...TTCTGACTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS GCA 90 bp GGTCAGGTCCTGCGGCTTCGAGTTAAGGCGCCGGGTATCAGCTACTaGCGTGTCCGACATCTTTCCGAAGGAGAGCCTGGGACCGGGGAA +
Preference number: 5 (lower is better)
Translates to: GQVLRLRVKAPGISY*RVRHLSEGEPGTGE
Trigger: TTCCCCGGTCCCAGGCTCTCCTTCGGAAAGATGTCGGACACGGCAGTAGCTGATACCCGGCGCCTTAACTCGAAGCCGCAGGACCTGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000465030.1
ENST00000622259.4
CDS-3UTR CAA 90 bp TTGATGCCCTTCCCTACCGCGGGTAAGAGCCTAGAAGATAATCCACTCCCACCCCTCTCACCCCACCACTaGGGACAGACGTTGGGCCCC +
Preference number: 5 (lower is better)
Translates to: LMPFPTAGKSLEDNPLPPLSPHH*GQTLGP
Trigger: GGGGCCCAACGTCTGTCCCAAGTGGTGGGGTGAGAG...GGGTGGGAGTGGATTATCTTCTAGGCTCTTACCCGCGGTAGGGAAGGGCATCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp CCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTTCTCCAGGAAGTTACTaGGCGGCCCGTAAGCGTCGG +
Preference number: 5 (lower is better)
Translates to: PGSTMPDSLSGQEMGSQLSPGSY*AARKRR
Trigger: CCGACGCTTACGGGCCGCCAAGTAACTTCCTGGAGA...AAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp AGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCGGAAGGAAGACAGTGTaGATGCCCTTCCCTACCGCG +
Preference number: 5 (lower is better)
Translates to: RYQGAQCQTVYQARRWAAGRKTV*MPFPTA
Trigger: CGCGGTAGGGAAGGGCATCAACACTGTCTTCCTTCC...GGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCGTAGTTCCTGTCAATaGCCTCCTCTTGCAGGAACA +
Preference number: 5 (lower is better)
Translates to: LPPFRELPGSGELPPPLKRSSCQ*PPLAGT
Trigger: TGTTCCTGCAAGAGGAGGCAATTGACAGGAACTACG...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS CCA 90 bp GCCCACCGTCTGAGGATTAAAGATGTCGATCTCCAGGAAGTTACTTaGCGGCCCGTAAGCGTCGGTCAGGTCCTGCGGCTTCGAGTTAAG +
Preference number: 5 (lower is better)
Translates to: AHRLRIKDVDLQEVT*RPVSVGQVLRLRVK
Trigger: CTTAACTCGAAGCCGCAGGACCTGACCGACGCTTACGGGCCGCCAAGTAACTTCCTGGAGATCGACATCTTTAATCCTCAGACGGTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000465030.1
ENST00000490561.6
ENST00000622259.4
ENST00000622277.4
CDS-3UTR CAA 90 bp TTGATGCCCTTCCCTACCGCGGGTAAGAGCCTAGAAGATAATCCACTCCCACCCCACTTGGGACAGACGTaGGGCCCCAGCAAACAAACC +
Preference number: 5 (lower is better)
Translates to: LMPFPTAGKSLEDNPLPPHLGQT*GPSKQT
Trigger: GGTTTGTTTGCTGGGGCCCAACGTCTGTCCCAAGTG...GGGTGGGAGTGGATTATCTTCTAGGCTCTTACCCGCGGTAGGGAAGGGCATCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp AAGCCCCGAGTCAGGATATATATACACAGCAGAAATGGGGCCTCAGACTCTCAGCTCTCACCCCACCACTaGGGACAGACGTTGGGCCCC +
Preference number: 5 (lower is better)
Translates to: KPRVRIYIHSRNGASDSQLSPHH*GQTLGP
Trigger: GGGGCCCAACGTCTGTCCCAAGTGGTGGGGTGAGAG...CTGAGAGTCTGAGGCCCCATTTCTGCTGTGTATATATATCCTGACTCGGGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp CAATCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCATCTCCAGGAAGTTACTaGGCGGCCCGTAAGCGTCGG +
Preference number: 5 (lower is better)
Translates to: QSFHDRESKQRAPTSHLASPGSY*AARKRR
Trigger: CCGACGCTTACGGGCCGCCAAGTAACTTCCTGGAGA...TGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGATTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp TCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCACCAGGAAGGAAGACAGTGTaGATGCCCTTCCCTACCGCG +
Preference number: 5 (lower is better)
Translates to: SFHDRESKQRAPTSHLAPGRKTV*MPFPTA
Trigger: CGCGGTAGGGAAGGGCATCAACACTGTCTTCCTTCC...TGGTGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp GGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAGGGTGCCCAGCAATTTaGTTAATAAACTGCTCGAGG +
Preference number: 5 (lower is better)
Translates to: GTREHNARQSIRPGDGQPGCPAI*LINCSR
Trigger: CCTCGAGCAGTTTATTAACAAAATTGCTGGGCACCC...TGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp CCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCGTAGTTCCTGTCAATaGCCTCCTCTTGCAGGAACA +
Preference number: 5 (lower is better)
Translates to: PGSTMPDSLSGQEMGSQLRSSCQ*PPLAGT
Trigger: TGTTCCTGCAAGAGGAGGCAATTGACAGGAACTACG...AAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp TCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGCCACCAAACCCATACAACAGACTGCTaGGACTCTAGGAGGATTACT +
Preference number: 5 (lower is better)
Translates to: SGSYLAVVSCPHPSSHQTHTTDC*DSRRIT
Trigger: AGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTATG...GGTTTGGTGGCTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp GGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGGGGTGCCCAGCAATTTaGTTAATAAACTGCTCGAGG +
Preference number: 5 (lower is better)
Translates to: GSTMPDSLSGQEMGSQLQGCPAI*LINCSR
Trigger: CCTCGAGCAGTTTATTAACAAAATTGCTGGGCACCC...CTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp GTCAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGGGTGCCCAGCAATTTaGTTAATAAACTGCTCGAGG +
Preference number: 5 (lower is better)
Translates to: VRYQGAQCQTVYQARRWAGCPAI*LINCSR
Trigger: CCTCGAGCAGTTTATTAACAAAATTGCTGGGCACCC...TGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp GCAGCAACAACAACATTGGCGAGGTGGGAAAGGGAGCAGAGCCTCTCATTAGGGCGTAGTTCCTGTCAATaGCCTCCTCTTGCAGGAACA +
Preference number: 5 (lower is better)
Translates to: AATTTLARWEREQSLSLGRSSCQ*PPLAGT
Trigger: TGTTCCTGCAAGAGGAGGCAATTGACAGGAACTACG...CCCTAATGAGAGGCTCTGCTCCCTTTCCCACCTCGCCAATGTTGTTGTTGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp GTCAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCACAGGACTCCTTTAGCTaGAAGATAGGTAGGTTTGTC +
Preference number: 5 (lower is better)
Translates to: VRYQGAQCQTVYQARRWAQDSFS*KIGRFV
Trigger: GACAAACCTACCTATCTTCAAGCTAAAGGAGTCCTG...TGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp AGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGGTGGTACTACAATCTaGCTATCTCTCTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: REHNARQSIRPGDGQPTSGGTTI*LSLSSS
Trigger: TGAGCTGGAGAGAGATAGCAAGATTGTAGTACCACC...TGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp CTCCCACCCTTCAGGGAGTTACCTGGCAGTGGTGAGTTGCCCCCACCCCTCAAGGAGTTGAATATGACATaGTCTGACAGAAGAATGAAC +
Preference number: 5 (lower is better)
Translates to: LPPFRELPGSGELPPPLKELNMT*SDRRMN
Trigger: GTTCATTCTTCTGTCAGACAATGTCATATTCAACTC...CTTGAGGGGTGGGGGCAACTCACCACTGCCAGGTAACTCCCTGAAGGGTGGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp AACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGCAGGCAGTTCAATTCTCCAGGAAGTTACTaGGCGGCCCGTAAGCGTCGG +
Preference number: 5 (lower is better)
Translates to: NFWGKCWSCMRNKCRQFNSPGSY*AARKRR
Trigger: CCGACGCTTACGGGCCGCCAAGTAACTTCCTGGAGA...ATTGAACTGCCTGCACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp TCAGAGAAGAGGATCCTAGCAGAGTGCCCACATGGTGTAGTCAGGTACCAGGGAGGTGGTACTACAATCTaGCTATCTCTCTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: SEKRILAECPHGVVRYQGGGTTI*LSLSSS
Trigger: TGAGCTGGAGAGAGATAGCAAGATTGTAGTACCACC...TCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAGGATCCTCTTCTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp AGGATCCTAGCAGAGTGCCCACATGGTGTAGTCAGGTACCAGGGAGCACAATGCCATACAACAGACTGCTaGGACTCTAGGAGGATTACT +
Preference number: 5 (lower is better)
Translates to: RILAECPHGVVRYQGAQCHTTDC*DSRRIT
Trigger: AGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTATG...GCATTGTGCTCCCTGGTACCTGACTACACCATGTGGGCACTCTGCTAGGATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp GTCAGGTACCAGGGAGCACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAAGAAGAATGAACAGTTaGCTGAATAAAAGCCCCGAG +
Preference number: 5 (lower is better)
Translates to: VRYQGAQCQTVYQARRWARRMNS*LNKSPE
Trigger: CTCGGGGCTTTTATTCAGCAAACTGTTCATTCTTCT...TGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGTGCTCCCTGGTACCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS GCA 90 bp ATGATGGGCCCAGAAAACCCACACACCCTGCTCCATACAACAGACTaGTTGGACTCTAGGAGGATTACTGCCATGGAAAGCAACAAGCTT +
Preference number: 5 (lower is better)
Translates to: MMGPENPHTLLHTTD*LDSRRITAMESNKL
Trigger: AAGCTTGTTGCTTTCCATGGCAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTGTATGGAGCAGGGTGTGTGGGTTTTCTGGGCCCATCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490561.6
CDS-3UTR CAA 90 bp TCTTTCCATGATAGGGAGTCTAAGCAAAGAGCCCCCACCTCTCACCTGGCACCATCAGACTCTCAGCACTaGTGCACAATGAAAGAGGAA +
Preference number: 5 (lower is better)
Translates to: SFHDRESKQRAPTSHLAPSDSQH*CTMKEE
Trigger: TTCCTCTTTCATTGTGCACAAGTGCTGAGAGTCTGA...TGGTGCCAGGTGAGAGGTGGGGGCTCTTTGCTTAGACTCCCTATCATGGAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS TCA 90 bp TCAATTGCCTCCTCTTGCAGGAACATGTGTAGGCAGCGTTCATTCTaGGCCAGTGGGTGCCCAGCAATTTTGTTAATAAACTGCTCGAGG +
Preference number: 5 (lower is better)
Translates to: SIASSCRNMCRQRSF*ASGCPAILLINCSR
Trigger: CCTCGAGCAGTTTATTAACAAAATTGCTGGGCACCCACTGGCTCAGAATGAACGCTGCCTACACATGTTCCTGCAAGAGGAGGCAATTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000483560.1
ENST00000622259.4
ENST00000622277.4
CDS-3UTR CAA 90 bp ACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGATCAAACAGGACTCCTTTAGCTaGAAGATAGGTAGGTTTGTC +
Preference number: 5 (lower is better)
Translates to: TMPDSLSGQEMGSQLQIKQDSFS*KIGRFV
Trigger: GACAAACCTACCTATCTTCAAGCTAAAGGAGTCCTG...TTTGATCTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp CAGCAGCTGGAGAGCTGTCTCAGGGAACTTCAACATTTAGATGGGTTCCAAATCGGTGGTACTACAATCTaGCTATCTCTCTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: QQLESCLRELQHLDGFQIGGTTI*LSLSSS
Trigger: TGAGCTGGAGAGAGATAGCAAGATTGTAGTACCACC...GATTTGGAACCCATCTAAATGTTGAAGTTCCCTGAGACAGCTCTCCAGCTGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp CAGCAGCTGGAGAGCTGTCTCAGGGAACTTCAACATTTAGATGGGTTCCAAATCGGGAAAATGCTGGAGTaGCATGAGAAACAAGTGCAG +
Preference number: 5 (lower is better)
Translates to: QQLESCLRELQHLDGFQIGKMLE*HEKQVQ
Trigger: CTGCACTTGTTTCTCATGCAACTCCAGCATTTTCCC...GATTTGGAACCCATCTAAATGTTGAAGTTCCCTGAGACAGCTCTCCAGCTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp ACAATGCCAGACAGTCTATCAGGCCAGGAGATGGGCAGCCAACTTCAGATCAAATCAGACTCTCAGCACTaGTGCACAATGAAAGAGGAA +
Preference number: 5 (lower is better)
Translates to: TMPDSLSGQEMGSQLQIKSDSQH*CTMKEE
Trigger: TTCCTCTTTCATTGTGCACAAGTGCTGAGAGTCTGA...TTTGATCTGAAGTTGGCTGCCCATCTCCTGGCCTGATAGACTGTCTGGCATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp CCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGTCAGAACACTTGGGACAGACGTaGGGCCCCAGCAAACAAACC +
Preference number: 5 (lower is better)
Translates to: PNPMSKYNPNLSDQGQSEHLGQT*GPSKQT
Trigger: GGTTTGTTTGCTGGGGCCCAACGTCTGTCCCAAGTG...TTCTGACTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp AACTTCTGGGGAAAATGCTGGAGTTGCATGAGAAACAAGTGCAGGCAGTTCAATCCCTGCTCAGTGTTCTaGGTTAAACCTAAGAGTAAG +
Preference number: 5 (lower is better)
Translates to: NFWGKCWSCMRNKCRQFNPCSVF*VKPKSK
Trigger: CTTACTCTTAGGTTTAACCAAGAACACTGAGCAGGG...ATTGAACTGCCTGCACTTGTTTCTCATGCAACTCCAGCATTTTCCCCAGAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS GCA 90 bp TTTCCGAAGGAGAGCCTTAATCAAACAGACACCTATTCATCTTCCTaGCCGTACATTTTTCTCAAAGGACATTTCACAATCTCCGACTCG +
Preference number: 5 (lower is better)
Translates to: FPKESLNQTDTYSSS*PYIFLKGHFTISDS
Trigger: CGAGTCGGAGATTGTGAAATGTCCTTTGAGAAAAATGTACGGGCAGGAAGATGAATAGGTGTCTGTTTGATTAAGGCTCTCCTTCGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000622277.4
CDS-3UTR CAA 90 bp AATCCTAATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTCCCTGCTCAGTGTTCTaGGTTAAACCTAAGAGTAAG +
Preference number: 5 (lower is better)
Translates to: NPNLSDQGQSESAILFHSPCSVF*VKPKSK
Trigger: CTTACTCTTAGGTTTAACCAAGAACACTGAGCAGGG...ACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATTAGGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp AATCTCTCTGATCAGGGTCAGTCAGAATCAGCAATCCTTTTCCACAGTGCCCTGGAGTTGAATATGACATaGTCTGACAGAAGAATGAAC +
Preference number: 5 (lower is better)
Translates to: NLSDQGQSESAILFHSALELNMT*SDRRMN
Trigger: GTTCATTCTTCTGTCAGACAATGTCATATTCAACTC...CAGGGCACTGTGGAAAAGGATTGCTGATTCTGACTGACCCTGATCAGAGAGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS TCA 90 bp CAAAGGACATTTCACAATCTCCGACTCGATGTTATGCAACCATACTaGAAAGAACTTCTTTCGATTCTCTCTTCAGGCTGTCCCAAGGAA +
Preference number: 5 (lower is better)
Translates to: QRTFHNLRLDVMQPY*KELLSILSSGCPKE
Trigger: TTCCTTGGGACAGCCTGAAGAGAGAATCGAAAGAAGTTCTTTTCAGTATGGTTGCATAACATCGAGTCGGAGATTGTGAAATGTCCTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622277.4
CDS-3UTR CAA 90 bp CCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGTCAGAAGGGAAAATGCTGGAGTaGCATGAGAAACAAGTGCAG +
Preference number: 5 (lower is better)
Translates to: PNPMSKYNPNLSDQGQSEGKMLE*HEKQVQ
Trigger: CTGCACTTGTTTCTCATGCAACTCCAGCATTTTCCC...TTCTGACTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS-3UTR CAA 90 bp TGGGTTCCAAATCCTATGTCAAAATACAATCCTAATCTCTCTGATCAGGGTCAGAGAAGAATGAACAGTTaGCTGAATAAAAGCCCCGAG +
Preference number: 5 (lower is better)
Translates to: WVPNPMSKYNPNLSDQGQRRMNS*LNKSPE
Trigger: CTCGGGGCTTTTATTCAGCAAACTGTTCATTCTTCT...CTGACCCTGATCAGAGAGATTAGGATTGTATTTTGACATAGGATTTGGAACCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000374274.8
ENST00000622277.4
CDS GCA 72 bp CTGCGGCTTCGAGTTAAGGCGCCGGGTATCAGCTACTaGCGTGTCCGACATCTTTCCGAAGGAGAGCCTGGG +
Preference number: 6 (lower is better)
Translates to: LRLRVKAPGISY*RVRHLSEGEPG
Trigger: CCCAGGCTCTCCTTCGGAAAGATGTCGGACACGGCAGTAGCTGATACCCGGCGCCTTAACTCGAAGCCGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000465030.1
ENST00000622259.4
CDS CAA 90 bp GGGGCTCCTACTGGCGCACCTTCCCCGGGACGTAGTTCCTGTCAATaGCCTCCTCTTGCAGGAACATGTGTAGGCAGCGTTCATTCTGAG +
Preference number: 6 (lower is better)
Translates to: GAPTGAPSPGRSSCQ*PPLAGTCVGSVHSE
Trigger: CTCAGAATGAACGCTGCCTACACATGTTCCTGCAAGAGGAGGCAATTGACAGGAACTACGTCCCGGGGAAGGTGCGCCAGTAGGAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000465030.1
ENST00000622277.4
CDS CCA 72 bp CTGAGGATTAAAGATGTCGATCTCCAGGAAGTTACTTaGCGGCCCGTAAGCGTCGGTCAGGTCCTGCGGCTT +
Preference number: 6 (lower is better)
Translates to: LRIKDVDLQEVT*RPVSVGQVLRL
Trigger: AAGCCGCAGGACCTGACCGACGCTTACGGGCCGCCAAGTAACTTCCTGGAGATCGACATCTTTAATCCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000465030.1
ENST00000490561.6
ENST00000622259.4
ENST00000622277.4
CDS CCA 72 bp AGGGAGCTGCCGCTTCAAGGCTTTCCCAGGCAGTGGTaGTACTACAATCTTGCTATCTCTCTCCAGCTCATT +
Preference number: 6 (lower is better)
Translates to: RELPLQGFPRQW*YYNLAISLQLI
Trigger: AATGAGCTGGAGAGAGATAGCAAGATTGTAGTACCACCACTGCCTGGGAAAGCCTTGAAGCGGCAGCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000483560.1
ENST00000622259.4
ENST00000622277.4
CDS CAA 90 bp AATCCTTTTCCACAGTGCCCTTCCCCGGGACGTAGTTCCTGTCAATaGCCTCCTCTTGCAGGAACATGTGTAGGCAGCGTTCATTCTGAG +
Preference number: 6 (lower is better)
Translates to: NPFPQCPSPGRSSCQ*PPLAGTCVGSVHSE
Trigger: CTCAGAATGAACGCTGCCTACACATGTTCCTGCAAGAGGAGGCAATTGACAGGAACTACGTCCCGGGGAAGGGCACTGTGGAAAAGGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000483560.1
CDS CAA 90 bp GACAACACTGTGAGAAAGACTTCCCCGGGACGTAGTTCCTGTCAATaGCCTCCTCTTGCAGGAACATGTGTAGGCAGCGTTCATTCTGAG +
Preference number: 6 (lower is better)
Translates to: DNTVRKTSPGRSSCQ*PPLAGTCVGSVHSE
Trigger: CTCAGAATGAACGCTGCCTACACATGTTCCTGCAAGAGGAGGCAATTGACAGGAACTACGTCCCGGGGAAGTCTTTCTCACAGTGTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000622259.4
CDS TCA 72 bp TCCTCTTGCAGGAACATGTGTAGGCAGCGTTCATTCTaGGCCAGTGGGTGCCCAGCAATTCTTGCTATCTCT +
Preference number: 6 (lower is better)
Translates to: SSCRNMCRQRSF*ASGCPAILAIS
Trigger: AGAGATAGCAAGAATTGCTGGGCACCCACTGGCTCAGAATGAACGCTGCCTACACATGTTCCTGCAAGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000465030.1
CDS CCA 72 bp CAACAGACTGCTTGGACTCTAGGAGGATTACTGCCATaGAAAGCAACAAGCTTGCTATCTCTCTCCAGCTCA +
Preference number: 6 (lower is better)
Translates to: QQTAWTLGGLLP*KATSLLSLSSS
Trigger: TGAGCTGGAGAGAGATAGCAAGCTTGTTGCTTTCCATGGCAGTAATCCTCCTAGAGTCCAAGCAGTCTGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490561.6
CDS TCA 72 bp TCCTCTTGCAGGAACATGTGTAGGCAGCGTTCATTCTaGGCCAGTGGGTGCCCAGCAATTTTGTTAATAAAC +
Preference number: 6 (lower is better)
Translates to: SSCRNMCRQRSF*ASGCPAILLIN
Trigger: GTTTATTAACAAAATTGCTGGGCACCCACTGGCTCAGAATGAACGCTGCCTACACATGTTCCTGCAAGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000483560.1
ENST00000622259.4
ENST00000622277.4
CDS GCA 72 bp TGCCCAGCAATTTTGTTAATAAACTGCTCGAGGCCCTaGCTCCTTTCTTCGATGAAAGACTCCTCAAAGATC +
Preference number: 6 (lower is better)
Translates to: CPAILLINCSRP*LLSSMKDSSKI
Trigger: GATCTTTGAGGAGTCTTTCATCGAAGAAAGGAGGCAGGGCCTCGAGCAGTTTATTAACAAAATTGCTGGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000276105.3
ENST00000374274.8
ENST00000483560.1
ENST00000622259.4
ENST00000622277.4
CDS TCA 72 bp TTTCACAATCTCCGACTCGATGTTATGCAACCATACTaGAAAGAACTTCTTTCGATTCTCTCTTCAGGCTGT +
Preference number: 6 (lower is better)
Translates to: FHNLRLDVMQPY*KELLSILSSGC
Trigger: ACAGCCTGAAGAGAGAATCGAAAGAAGTTCTTTTCAGTATGGTTGCATAACATCGAGTCGGAGATTGTGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622277.4