Pregenerated sensors for SNURF (Homo sapiens)
Ensembl gene IDs: ENSG00000273173Ensembl transcript IDs: ENST00000577949.5, ENST00000580062.5
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TGGCAGTCGCAGCAACAGCAGCAGCTGCTACAGTGCCTCTTCCCTGTGGAGTCATCCTCGGACAGGGCCTaGCAATCCAGCAGGGGCCTG | + |
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Preference number: 2 (lower is better) Translates to: WQSQQQQQLLQCLFPVESSSDRA*QSSRGL Trigger: CAGGCCCCTGCTGGATTGGCAGGCCCTGTCCGAGGA...TGACTCCACAGGGAAGAGGCACTGTAGCAGCTGCTGCTGTTGCTGCGACTGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580062.5 |
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| 3UTR-3UTR GCA 90 bp | GTCGCAGCAACAGCAGCAGCTGCTACAGTGCCTCTTCCCTGTGGAGTCATTACCGCATCTTGCTACTCTTaGCAACAGTCTGGTTTTTGC | + |
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Preference number: 2 (lower is better) Translates to: VAATAAAATVPLPCGVITASCYS*QQSGFC Trigger: GCAAAAACCAGACTGTTGGCAAGAGTAGCAAGATGC...GGTAATGACTCCACAGGGAAGAGGCACTGTAGCAGCTGCTGCTGTTGCTGCGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000580062.5 |
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| 3UTR-3UTR CCA 90 bp | TGGCAGTCGCAGCAACAGCAGCAGCTGCTACAGTGCCTCTTCCCTGTGGAGTCACTCTTGCCAACAGTCTaGTTTTTGCTTGGAATCAGA | + |
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Preference number: 2 (lower is better) Translates to: WQSQQQQQLLQCLFPVESLLPTV*FLLGIR Trigger: TCTGATTCCAAGCAAAAACCAGACTGTTGGCAAGAG...TGACTCCACAGGGAAGAGGCACTGTAGCAGCTGCTGCTGTTGCTGCGACTGCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000580062.5 |
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| 3UTR-3UTR CAA 90 bp | AATACTGGCAGTCGCAGCAACAGCAGCAGCTGCTACAGTGCCTCTTCCCTGTGGGAAGATTCGGCCATCTaGCAGGATACATCTCATTCT | + |
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Preference number: 3 (lower is better) Translates to: NTGSRSNSSSCYSASSLWEDSAI*QDTSHS Trigger: AGAATGAGATGTATCCTGCAAGATGGCCGAATCTTC...CCACAGGGAAGAGGCACTGTAGCAGCTGCTGCTGTTGCTGCGACTGCCAGTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580062.5 |
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| CDS-3UTR GCA 90 bp | AATACTGGCAGTCGCAGCAACAGCAGCAGCTGCTACAGTGCCTCTTCCCTGTGGTCCTCGGACAGGGCCTaGCAATCCAGCAGGGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: NTGSRSNSSSCYSASSLWSSDRA*QSSRGL Trigger: CAGGCCCCTGCTGGATTGGCAGGCCCTGTCCGAGGA...CCACAGGGAAGAGGCACTGTAGCAGCTGCTGCTGTTGCTGCGACTGCCAGTATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580062.5 |
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| CDS-3UTR GCA 90 bp | TGGCAGTCGCAGCAACAGCAGCAGCTGCTACAGTGCCTCTTCCCTGTGGAGTCACAGCAGCTGCTACAGTaGCTCTTCCCTGTGGAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: WQSQQQQQLLQCLFPVESQQLLQ*LFPVES Trigger: TGACTCCACAGGGAAGAGGCACTGTAGCAGCTGCTG...TGACTCCACAGGGAAGAGGCACTGTAGCAGCTGCTGCTGTTGCTGCGACTGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580062.5 |
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| CDS-3UTR GCA 90 bp | AATACTGGCAGTCGCAGCAACAGCAGCAGCTGCTACAGTGCCTCTTCCCTGTGGTGTGGAGTCATTACCTaGTGGGATGGTCCCCCAACT | + |
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Preference number: 4 (lower is better) Translates to: NTGSRSNSSSCYSASSLWCGVIT*WDGPPT Trigger: AGTTGGGGGACCATCCCAGCAGGTAATGACTCCACA...CCACAGGGAAGAGGCACTGTAGCAGCTGCTGCTGTTGCTGCGACTGCCAGTATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000580062.5 |
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| CDS-3UTR GCA 90 bp | ATTAATGTGTCACTGATAATTAAGAGAACCCCCAACACCCCATTCTTTAATGATCGCTCCTCAGACAGATaGGTCAGGCATCTCCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: INVSLIIKRTPNTPFFNDRSSDR*VRHLRR Trigger: CCGCCGGAGATGCCTGACGCATCTGTCTGAGGAGCG...ATCATTAAAGAATGGGGTGTTGGGGGTTCTCTTAATTATCAGTGACACATTAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000577949.5 |
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| CDS-3UTR TCA 90 bp | ATTCTTGATCATTGCTGCATTAGCTCTAACCTGGTTTTTGCTTGGAATCAGATTTGGAATACAGAAACATaGCGAAAGTGTCAGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: ILDHCCISSNLVFAWNQIWNTET*RKCQGR Trigger: TCTGCCCTGACACTTTCGTCATGTTTCTGTATTCCA...AATCTGATTCCAAGCAAAAACCAGGTTAGAGCTAATGCAGCAATGATCAAGAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000577949.5 |
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| CDS-3UTR CCA 90 bp | ATTCTTGATCATTGCTGCATTAGCTCTAACCTGGTTTTTGCTTGGAATCAGATTGCATTAGCTCTAACCTaGTTTTTGCTTGGAATCAGA | + |
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Preference number: 4 (lower is better) Translates to: ILDHCCISSNLVFAWNQIALALT*FLLGIR Trigger: TCTGATTCCAAGCAAAAACCAGGTTAGAGCTAATGC...AATCTGATTCCAAGCAAAAACCAGGTTAGAGCTAATGCAGCAATGATCAAGAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000577949.5 |
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| CDS-3UTR TCA 90 bp | ATTAATGTGTCACTGATAATTAAGAGAACCCCCAACACCCCATTCTTTAATGATCAAAAGAAAACTACCTaGAAAGCATGCGCTACAATA | + |
|
Preference number: 4 (lower is better) Translates to: INVSLIIKRTPNTPFFNDQKKTT*KACATI Trigger: TATTGTAGCGCATGCTTTTCAGGTAGTTTTCTTTTG...ATCATTAAAGAATGGGGTGTTGGGGGTTCTCTTAATTATCAGTGACACATTAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000577949.5 |
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| CDS-3UTR GCA 90 bp | ATTCTTGATCATTGCTGCATTAGCTCTAACCTGGTTTTTGCTTGGAATCAGATTTTTATTCTTGATCATTaGTGCATTAGCTCTAACCTG | + |
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Preference number: 4 (lower is better) Translates to: ILDHCCISSNLVFAWNQIFILDH*CISSNL Trigger: CAGGTTAGAGCTAATGCAGCAATGATCAAGAATAAA...AATCTGATTCCAAGCAAAAACCAGGTTAGAGCTAATGCAGCAATGATCAAGAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000577949.5 |
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| CDS-3UTR CAA 90 bp | CGCAGCAACAGCAGCAGCTGCTACAGTGCCTCTTCCCTGTGGAGTCATTACCTGGGTGTAAGCGATCCCTaGCCCGCTCCATCGCGTCAC | + |
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Preference number: 5 (lower is better) Translates to: RSNSSSCYSASSLWSHYLGVSDP*PAPSRH Trigger: GTGACGCGATGGAGCGGGCAAGGGATCGCTTACACC...CAGGTAATGACTCCACAGGGAAGAGGCACTGTAGCAGCTGCTGCTGTTGCTGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580062.5 |
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| CDS-3UTR CAA 90 bp | CGCAGCAACAGCAGCAGCTGCTACAGTGCCTCTTCCCTGTGGAGTCATTACCTGGAAGATTCGGCCATCTaGCAGGATACATCTCATTCT | + |
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Preference number: 5 (lower is better) Translates to: RSNSSSCYSASSLWSHYLEDSAI*QDTSHS Trigger: AGAATGAGATGTATCCTGCAAGATGGCCGAATCTTC...CAGGTAATGACTCCACAGGGAAGAGGCACTGTAGCAGCTGCTGCTGTTGCTGCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580062.5 |
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| CDS-3UTR CAA 90 bp | TTCTTGATCATTGCTGCATTAGCTCTAACCTGGTTTTTGCTTGGAATCAGATTCGGTGTAAGCGATCCCTaGCCCGCTCCATCGCGTCAC | + |
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Preference number: 5 (lower is better) Translates to: FLIIAALALTWFLLGIRFGVSDP*PAPSRH Trigger: GTGACGCGATGGAGCGGGCAAGGGATCGCTTACACC...GAATCTGATTCCAAGCAAAAACCAGGTTAGAGCTAATGCAGCAATGATCAAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000577949.5 |
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