Pregenerated sensors for SNRPN (Homo sapiens)
Ensembl gene IDs: ENSG00000128739Ensembl transcript IDs: ENST00000346403.10, ENST00000390687.9, ENST00000400097.5, ENST00000400098.6, ENST00000400100.5, ENST00000553597.5, ENST00000554227.6, ENST00000584968.5, ENST00000642807.1, ENST00000645002.1
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCATGCTCTGCCGACGGGTaGGGGCGGAGTGCCCCGTCC | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQACSADG*GRSAPS Trigger: GGACGGGGCACTCCGCCCCCACCCGTCGGCAGAGCA...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR GCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCAGAGGTGGGGTTGCTCTaGCGACGGGTGGGGGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQAEVGLL*RRVGAE Trigger: CTCCGCCCCCACCCGTCGGCAGAGCAACCCCACCTC...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR GCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCAGCCTGGAGGTGGGGTTaGTCTGCCGACGGGTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQAAWRWG*SADGWG Trigger: CCCCCACCCGTCGGCAGAGCAACCCCACCTCCAGGC...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR TCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCAGCTCCATCGCGTCACTaGCCGCTCCTCAGACAGATG | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQAAPSRH*PLLRQM Trigger: CATCTGTCTGAGGAGCGGTCAGTGACGCGATGGAGC...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR CCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCACATAATGCCTGGAGGTaGGGTTGCTCTGCCGACGGG | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQAHNAWR*GCSADG Trigger: CCCGTCGGCAGAGCAACCCCACCTCCAGGCATTATG...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR CCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCAGGGCTCCAGCAATACTaGCAGTCGCAGCAACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQAGLQQY*QSQQQQ Trigger: CTGCTGTTGCTGCGACTGCCAGTATTGCTGGAGCCC...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR CCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCACATTCCTGGGGGAGGTaGACCTCTAATGCCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQAHSWGR*TSNAWW Trigger: CCACCAGGCATTAGAGGTCCACCTCCCCCAGGAATG...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR TCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCACGCCTCGGGTACAACTaGCACTCTTGGTTGCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQARLGYN*HSWLLS Trigger: ACTGAGCAACCAAGAGTGTCAGTTGTACCCGAGGCG...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR TCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCACTCTTGGTTGCTCAGTaGGGCAGTCCTTCTGCGTTT | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQALLVAQ*GSPSAF Trigger: AAACGCAGAAGGACTGCCTCACTGAGCAACCAAGAG...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR CCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCAAGTATGCTAAGGTCTTaGTGGACGCATTCCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQASMLRS*WTHSWG Trigger: CCCCCAGGAATGCGTCCACCAAGACCTTAGCATACT...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR CCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCAGCTTCAAAGAGTAGATaGAGCCTGGTTTTTGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQAASKSR*SLVFAW Trigger: CCAAGCAAAAACCAGGCTCCATCTACTCTTTGAAGC...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR GCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCAGCCAACAGTCATGATTaGTGTTCCACCAAATCCAAT | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQAANSHD*CSTKSN Trigger: ATTGGATTTGGTGGAACAGCAATCATGACTGTTGGC...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR CCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCAAGAGTAGATGGAGCCTaGTTTTTGCTTGGAATCAGA | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQARVDGA*FLLGIR Trigger: TCTGATTCCAAGCAAAAACCAGGCTCCATCTACTCT...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS-3UTR CCA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCAAGAAACAATGCAAGCTaGGCAGAAGCTTCAAAGAGT | + |
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Preference number: 4 (lower is better) Translates to: IGITLIHSNLRSHQNQQARNNAS*AEASKS Trigger: ACTCTTTGAAGCTTCTGCCCAGCTTGCATTGTTTCT...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS GCA 90 bp | CTCCTCAGACAGATGCGTCAGGCATCTCCGGCGGCCGCTCCACTCTaGGCCAGACTCGCTGCAGCAGCGGCAGGCTTCGCACACATCCCC | + |
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Preference number: 5 (lower is better) Translates to: LLRQMRQASPAAAPL*ARLAAAAAGFAHIP Trigger: GGGGATGTGTGCGAAGCCTGCCGCTGCTGCAGCGAGTCTGGCGCAGAGTGGAGCGGCCGCCGGAGATGCCTGACGCATCTGTCTGAGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000346403.10 ENST00000584968.5 |
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| CDS CCA 90 bp | CACTTACATATGCTGGAGAAGTGCCCCACGTGGCTGCTAGCTGTGTaGAGACTTGATGGGAGTCCCAATTACCTTCGTCAAAGTATCAGG | + |
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Preference number: 5 (lower is better) Translates to: HLHMLEKCPTWLLAV*RLDGSPNYLRQSIR Trigger: CCTGATACTTTGACGAAGGTAATTGGGACTCCCATCAAGTCTCCACACAGCTAGCAGCCACGTGGGGCACTTCTCCAGCATATGTAAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000400097.5 ENST00000400098.6 ENST00000553597.5 |
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| CDS CCA 90 bp | CACTTACATATGCTGGAGAAGTGCCCCACGTGGCTGCTAGCTGTGTaGAGACTTGATGGGAGTCCCAATTACCTTCGTCAAAGTATCTCA | + |
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Preference number: 5 (lower is better) Translates to: HLHMLEKCPTWLLAV*RLDGSPNYLRQSIS Trigger: TGAGATACTTTGACGAAGGTAATTGGGACTCCCATCAAGTCTCCACACAGCTAGCAGCCACGTGGGGCACTTCTCCAGCATATGTAAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000400100.5 ENST00000642807.1 |
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| CDS TCA 90 bp | AAAGCTGAATTTGCAGCTTCAGTTCTGTTGATTCTGGGTCAGATCTaGTCCTCTCTCAACGTGTGTTCCTCAGACCAGTCCTGGCACTTG | + |
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Preference number: 5 (lower is better) Translates to: KAEFAASVLLILGQI*SSLNVCSSDQSWHL Trigger: CAAGTGCCAGGACTGGTCTGAGGAACACACGTTGAGAGAGGATCAGATCTGACCCAGAATCAACAGAACTGAAGCTGCAAATTCAGCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553597.5 |
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| CDS-3UTR CAA 90 bp | ATAGGCATCACCCTCATCCACAGTAACTTAAGATCTCATCAAAATCAACAGGCACAGTATGCTAAGGTCTaGGTGGACGCATTCCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: IGITLIHSNLRSHQNQQAQYAKV*VDAFLG Trigger: CCCCAGGAATGCGTCCACCAAGACCTTAGCATACTG...TGCCTGTTGATTTTGATGAGATCTTAAGTTACTGTGGATGAGGGTGATGCCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390687.9 |
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| CDS TCA 90 bp | ACATCTGAAGCCTTCACAAAGCTGAATTTGCAGCTTCAGTTCTGTTaGTTCTGGGTCAGATCTGATCCTCTCTCAACGTGTGTTCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: TSEAFTKLNLQLQFC*FWVRSDPLSTCVPQ Trigger: CTGAGGAACACACGTTGAGAGAGGATCAGATCTGACCCAGAATCAACAGAACTGAAGCTGCAAATTCAGCTTTGTGAAGGCTTCAGATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553597.5 |
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| CDS CCA 90 bp | CGATCCCATGTTCCCCGCCATCCTAAGGCAGATGATTTCATAGAATaGTGGAAAGGCCTTTTGAAGATTCAGTTACAGTACCAGCTATTT | + |
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Preference number: 5 (lower is better) Translates to: RSHVPRHPKADDFIE*WKGLLKIQLQYQLF Trigger: AAATAGCTGGTACTGTAACTGAATCTTCAAAAGGCCTTTCCACCATTCTATGAAATCATCTGCCTTAGGATGGCGGGGAACATGGGATCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000642807.1 |
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| CDS TCA 90 bp | AGAGGAGATTCTGGTGGAAGAGTATGTTCAGGGAATGTTGCCTTCTaGGTTCCACTTACATATGCCACAAGAATATGTCCATTCCATCTT | + |
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Preference number: 5 (lower is better) Translates to: RGDSGGRVCSGNVAF*VPLTYATRICPFHL Trigger: AAGATGGAATGGACATATTCTTGTGGCATATGTAAGTGGAACTCAGAAGGCAACATTCCCTGAACATACTCTTCCACCAGAATCTCCTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000645002.1 |
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| CDS GCA 72 bp | ATCTCCGGCGGCCGCTCCACTCTGCGCCAGACTCGCTaGAGCAGCGGCAGGCTTCGCACACATCCCCGCCTG | + |
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Preference number: 6 (lower is better) Translates to: ISGGRSTLRQTR*SSGRLRTHPRL Trigger: CAGGCGGGGATGTGTGCGAAGCCTGCCGCTGCTGCAGCGAGTCTGGCGCAGAGTGGAGCGGCCGCCGGAGAT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000346403.10 ENST00000584968.5 |
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| CDS GCA 72 bp | CAGATGCGTCAGGCATCTCCGGCGGCCGCTCCACTCTaGGCCAGACTCGCTGCAGCAGCGGCAGGCTTCGCA | + |
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Preference number: 6 (lower is better) Translates to: QMRQASPAAAPL*ARLAAAAAGFA Trigger: TGCGAAGCCTGCCGCTGCTGCAGCGAGTCTGGCGCAGAGTGGAGCGGCCGCCGGAGATGCCTGACGCATCTG 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000346403.10 ENST00000554227.6 ENST00000584968.5 |
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| CDS CCA 72 bp | GGCTCTCCAGCTGTGAACCTGGAGAAGTGCCCCACGTaGCTGCTAGCTGTGTGGAGACTTGATGGGAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: GSPAVNLEKCPT*LLAVWRLDGSP Trigger: GGGACTCCCATCAAGTCTCCACACAGCTAGCAGCCACGTGGGGCACTTCTCCAGGTTCACAGCTGGAGAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000645002.1 |
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| CDS CCA 72 bp | GAGTTCCACTTACATATGCTGGAGAAGTGCCCCACGTaGCTGCTAGCTGTGTGGAGACTTGATGGGAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: EFHLHMLEKCPT*LLAVWRLDGSP Trigger: GGGACTCCCATCAAGTCTCCACACAGCTAGCAGCCACGTGGGGCACTTCTCCAGCATATGTAAGTGGAACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000400097.5 ENST00000400098.6 ENST00000400100.5 ENST00000553597.5 ENST00000642807.1 |
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| CDS CCA 72 bp | ATGCTGGAGAAGTGCCCCACGTGGCTGCTAGCTGTGTaGAGACTTGATGGGAGTCCCAATTACCTTCGTCAA | + |
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Preference number: 6 (lower is better) Translates to: MLEKCPTWLLAV*RLDGSPNYLRQ Trigger: TTGACGAAGGTAATTGGGACTCCCATCAAGTCTCCACACAGCTAGCAGCCACGTGGGGCACTTCTCCAGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000400097.5 ENST00000400098.6 ENST00000400100.5 ENST00000553597.5 ENST00000642807.1 |
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| CDS CCA 72 bp | AACCTGGAGAAGTGCCCCACGTGGCTGCTAGCTGTGTaGAGACTTGATGGGAGTCCCAATTACCTTCGTCAA | + |
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Preference number: 6 (lower is better) Translates to: NLEKCPTWLLAV*RLDGSPNYLRQ Trigger: TTGACGAAGGTAATTGGGACTCCCATCAAGTCTCCACACAGCTAGCAGCCACGTGGGGCACTTCTCCAGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000645002.1 |
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| CDS TCA 72 bp | TCTGGTGGAAGAGTATGTTCAGGGAATGTTGCCTTCTaGGTTCCACTTACATATGCTGGAGAAGTGCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: SGGRVCSGNVAF*VPLTYAGEVPH Trigger: GTGGGGCACTTCTCCAGCATATGTAAGTGGAACTCAGAAGGCAACATTCCCTGAACATACTCTTCCACCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000400097.5 ENST00000400098.6 ENST00000400100.5 ENST00000553597.5 ENST00000642807.1 |
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| CDS TCA 72 bp | TTTGCAGCTTCAGTTCTGTTGATTCTGGGTCAGATCTaGTCCTCTCTCAACGTGTGTTCCTCAGACCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: FAASVLLILGQI*SSLNVCSSDQS Trigger: GGACTGGTCTGAGGAACACACGTTGAGAGAGGATCAGATCTGACCCAGAATCAACAGAACTGAAGCTGCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553597.5 |
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| CDS CAA 72 bp | TCTCTCAACGTGTGTTCCTCAGACCAGTCCTGGCACTaGTTCGAAATGCAGATTCTTCTGCCGCAAACCAAA | + |
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Preference number: 6 (lower is better) Translates to: SLNVCSSDQSWH*FEMQILLPQTK Trigger: TTTGGTTTGCGGCAGAAGAATCTGCATTTCGAACAAGTGCCAGGACTGGTCTGAGGAACACACGTTGAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553597.5 |
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| CDS CAA 90 bp | AAATCTGTAGAGGAGATTCTGGTGGAAGAGTATGTTCAGGGAATGTaGCCTTCTGAGTTCCACTTACATATGCTGGAGAAGTGCCCCACG | + |
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Preference number: 6 (lower is better) Translates to: KSVEEILVEEYVQGM*PSEFHLHMLEKCPT Trigger: CGTGGGGCACTTCTCCAGCATATGTAAGTGGAACTCAGAAGGCAACATTCCCTGAACATACTCTTCCACCAGAATCTCCTCTACAGATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000400097.5 ENST00000400098.6 ENST00000400100.5 ENST00000553597.5 ENST00000642807.1 |
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| CDS GCA 72 bp | TGTGTTCCTCAGACCAGTCCTGGCACTTGTTCGAAATaGAGATTCTTCTGCCGCAAACCAAACCATAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: CVPQTSPGTCSK*RFFCRKPNHKR Trigger: TCTCTTATGGTTTGGTTTGCGGCAGAAGAATCTGCATTTCGAACAAGTGCCAGGACTGGTCTGAGGAACACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553597.5 |
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| CDS CAA 72 bp | AGCATTTGCAGGGAGATGTTTAGGCCGTCCTTCATATaGATCCTCCTGACAAGTCACTACTCTTGGTTGCTC | + |
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Preference number: 6 (lower is better) Translates to: SICREMFRPSFI*ILLTSHYSWLL Trigger: GAGCAACCAAGAGTAGTGACTTGTCAGGAGGATCAATATGAAGGACGGCCTAAACATCTCCCTGCAAATGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000554227.6 ENST00000584968.5 |
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| CDS TCA 72 bp | GCCTTCACAAAGCTGAATTTGCAGCTTCAGTTCTGTTaGTTCTGGGTCAGATCTGATCCTCTCTCAACGTGT | + |
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Preference number: 6 (lower is better) Translates to: AFTKLNLQLQFC*FWVRSDPLSTC Trigger: ACACGTTGAGAGAGGATCAGATCTGACCCAGAATCAACAGAACTGAAGCTGCAAATTCAGCTTTGTGAAGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553597.5 |
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| CDS CCA 72 bp | CCCCGCCATCCTAAGGCAGATGATTTCATAGAATGGTaGAAAGGCCTTTTGAAGATTCAGTTACAGTACCAG | + |
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Preference number: 6 (lower is better) Translates to: PRHPKADDFIEW*KGLLKIQLQYQ Trigger: CTGGTACTGTAACTGAATCTTCAAAAGGCCTTTCCACCATTCTATGAAATCATCTGCCTTAGGATGGCGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000642807.1 |
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| CDS CAA 72 bp | GAGGAGATTCTGGTGGAAGAGTATGTTCAGGGAATGTaGCCTTCTGAGTTCCACTTACATATGCTGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: EEILVEEYVQGM*PSEFHLHMLEK Trigger: CTTCTCCAGCATATGTAAGTGGAACTCAGAAGGCAACATTCCCTGAACATACTCTTCCACCAGAATCTCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000400097.5 ENST00000400098.6 ENST00000400100.5 ENST00000553597.5 ENST00000642807.1 |
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| CDS GCA 72 bp | AGGAGATTCTGGTGGAAGAGTATGTTCAGGGAATGTTaGCTTCTGAGTTCCACTTACATATGCTGGAGAAGT | + |
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Preference number: 6 (lower is better) Translates to: RRFWWKSMFREC*LLSSTYICWRS Trigger: ACTTCTCCAGCATATGTAAGTGGAACTCAGAAGGCAACATTCCCTGAACATACTCTTCCACCAGAATCTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000400097.5 ENST00000400098.6 ENST00000400100.5 ENST00000553597.5 ENST00000642807.1 |
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| CDS CAA 72 bp | CCCAATTACCTTCGTCAAAGTATCAGGAAGGTGTCATaGATCAGCGACCACAGTTACTGTAGAGAAAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: PNYLRQSIRKVS*ISDHSYCREKP Trigger: AGGCTTTTCTCTACAGTAACTGTGGTCGCTGATCAATGACACCTTCCTGATACTTTGACGAAGGTAATTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400098.6 |
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| CDS CAA 72 bp | GAGGAGATTCTGGTGGAAGAGTATGTTCAGGGAATGTaGCCTTCTGAGTTCCACTTACATATGCCACAAGAA | + |
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Preference number: 6 (lower is better) Translates to: EEILVEEYVQGM*PSEFHLHMPQE Trigger: TTCTTGTGGCATATGTAAGTGGAACTCAGAAGGCAACATTCCCTGAACATACTCTTCCACCAGAATCTCCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000645002.1 |
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| CDS TCA 72 bp | CCAATTACCTTCGTCAAAGTATCAGGAAGGTGTCATTaGTCAGCGACCACAGTTACTGTAGAGAAAAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: PITFVKVSGRCH*SATTVTVEKSL Trigger: AAGGCTTTTCTCTACAGTAACTGTGGTCGCTGATCAATGACACCTTCCTGATACTTTGACGAAGGTAATTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400098.6 |
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| CDS TCA 72 bp | CATCTGCAGGACAGTCCTTCACCACTGGTGGAATCATaGCCAAAAACTCCTGTATTTTCTCACATCATGAAA | + |
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Preference number: 6 (lower is better) Translates to: HLQDSPSPLVES*PKTPVFSHIMK Trigger: TTTCATGATGTGAGAAAATACAGGAGTTTTTGGTCATGATTCCACCAGTGGTGAAGGACTGTCCTGCAGATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554227.6 |
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| CDS TCA 72 bp | TCTGGTGGAAGAGTATGTTCAGGGAATGTTGCCTTCTaGGTTCCACTTACATATGCCACAAGAATATGTCCA | + |
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Preference number: 6 (lower is better) Translates to: SGGRVCSGNVAF*VPLTYATRICP Trigger: TGGACATATTCTTGTGGCATATGTAAGTGGAACTCAGAAGGCAACATTCCCTGAACATACTCTTCCACCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000645002.1 |
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| CDS CCA 72 bp | TTACAGTACCAGCTATTTGGTAATACTTTACAGGACTaGGGTAAGGCTTTTCAGGAGGCTGTATACTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: LQYQLFGNTLQD*GKAFQEAVYCL Trigger: CAGACAGTATACAGCCTCCTGAAAAGCCTTACCCCAGTCCTGTAAAGTATTACCAAATAGCTGGTACTGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000642807.1 |
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| CDS CAA 90 bp | AAATCTGTAGAGGAGATTCTGGTGGAAGAGTATGTTCAGGGAATGTaGCCTTCTGAGTTCCACTTACATATGCCACAAGAATATGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: KSVEEILVEEYVQGM*PSEFHLHMPQEYVH Trigger: ATGGACATATTCTTGTGGCATATGTAAGTGGAACTCAGAAGGCAACATTCCCTGAACATACTCTTCCACCAGAATCTCCTCTACAGATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000645002.1 |
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| CDS CAA 90 bp | CGCCATCCTAAGGCAGATGATTTCATAGAATGGTGGAAAGGCCTTTaGAAGATTCAGTTACAGTACCAGCTATTTGGTAATACTTTACAG | + |
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Preference number: 6 (lower is better) Translates to: RHPKADDFIEWWKGL*KIQLQYQLFGNTLQ Trigger: CTGTAAAGTATTACCAAATAGCTGGTACTGTAACTGAATCTTCAAAAGGCCTTTCCACCATTCTATGAAATCATCTGCCTTAGGATGGCG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000642807.1 |
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| CDS TCA 72 bp | AAAAAGCAATATGAAATGTTACCAGGAAGGTGTCATTaGTCAGCGACCACAGTTACTGTAGAGAAAAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: KKQYEMLPGRCH*SATTVTVEKSL Trigger: AAGGCTTTTCTCTACAGTAACTGTGGTCGCTGATCAATGACACCTTCCTGGTAACATTTCATATTGCTTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000400100.5 |
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| CDS CAA 72 bp | AAGGCAGATGATTTCATAGAATGGTGGAAAGGCCTTTaGAAGATTCAGTTACAGTACCAGCTATTTGGTAAT | + |
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Preference number: 6 (lower is better) Translates to: KADDFIEWWKGL*KIQLQYQLFGN Trigger: ATTACCAAATAGCTGGTACTGTAACTGAATCTTCAAAAGGCCTTTCCACCATTCTATGAAATCATCTGCCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000642807.1 |
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