Pregenerated sensors for SNRPF (Homo sapiens)
Ensembl gene IDs: ENSG00000139343Ensembl transcript IDs: ENST00000266735.9, ENST00000551316.1, ENST00000552085.1, ENST00000553192.5
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CCCCACAACACTGCAAATGTGCTCTTTCTGAAAGCCAGCTCTCACTaGGAAATAGGCGAGTTTCCCATACAAGTTCCTACCTGTGTCTCC | + |
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Preference number: 2 (lower is better) Translates to: PHNTANVLFLKASSH*EIGEFPIQVPTCVS Trigger: GGAGACACAGGTAGGAACTTGTATGGGAAACTCGCCTATTTCCAAGTGAGAGCTGGCTTTCAGAAAGAGCACATTTGCAGTGTTGTGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553192.5 |
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| 3UTR-3UTR TCA 90 bp | GGCTTAAAACTCAACCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTAAAGCATTAGTTCAGTaGGTAATCTTTCCCAATTGG | + |
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Preference number: 2 (lower is better) Translates to: GLKLNLEVMSQNIMGRLVKALVQ*VIFPNW Trigger: CCAATTGGGAAAGATTACTCACTGAACTAATGCTTT...AACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGGTTGAGTTTTAAGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| 3UTR-3UTR GCA 90 bp | CCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTTATTTGACATTAAGTGAACAAACCGTATaGCTTCAGCCTGAATGTCAG | + |
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Preference number: 2 (lower is better) Translates to: PRGYVSEHNGETGFYLTLSEQTV*LQPECQ Trigger: CTGACATTCAGGCTGAAGGCATACGGTTTGTTCACT...TAATGTCAAATAAAAACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| 3UTR-3UTR CCA 90 bp | GGCTTAAAACTCAACCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTGTAATCTTTCCCAATTaGTTCATCATTTCAGCTTTG | + |
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Preference number: 2 (lower is better) Translates to: GLKLNLEVMSQNIMGRLVVIFPN*FIISAL Trigger: CAAAGCTGAAATGATGAACCAATTGGGAAAGATTAC...AACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGGTTGAGTTTTAAGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| 3UTR-3UTR CAA 90 bp | CCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTTATTTGACATTAAGTTCCCAATTTCTGTaGTGCCCTGTCTGTACAATC | + |
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Preference number: 3 (lower is better) Translates to: PRGYVSEHNGETGFYLTLSSQFL*CPVCTI Trigger: GATTGTACAGACAGGGCACAACAGAAATTGGGAACT...TAATGTCAAATAAAAACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR TCA 90 bp | TTGGAAATAGGCGAGTTTCCCATACAAGTTCCTACCTGTGTCTCCCTCATCCTTGCCGCCCGTCCCTCGTaGCTACAGCAGGTACCGCAG | + |
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Preference number: 4 (lower is better) Translates to: LEIGEFPIQVPTCVSLILAARPS*LQQVPQ Trigger: CTGCGGTACCTGCTGTAGTCACGAGGGACGGGCGGC...AAGGATGAGGGAGACACAGGTAGGAACTTGTATGGGAAACTCGCCTATTTCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553192.5 |
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| CDS-3UTR GCA 90 bp | GAAATAGGCGAGTTTCCCATACAAGTTCCTACCTGTGTCTCCCTCATCCTTAGATTGCAGGCTACTCTCTaGCGACCAGGCCGCCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: EIGEFPIQVPTCVSLILRLQATL*RPGRRP Trigger: CGGGCGGCGGCCTGGTCGGCAGAGAGTAGCCTGCAA...TCTAAGGATGAGGGAGACACAGGTAGGAACTTGTATGGGAAACTCGCCTATTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553192.5 |
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| CDS-3UTR GCA 90 bp | GGCTTAAAACTCAACCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTGCAGGCTACTCTCTaGCGACCAGGCCGCCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: GLKLNLEVMSQNIMGRLVLQATL*RPGRRP Trigger: CGGGCGGCGGCCTGGTCGGCAGAGAGTAGCCTGCAA...AACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGGTTGAGTTTTAAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR TCA 90 bp | CCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTTATTTGACATTAGCCGCCCGTCCCTCGTaGCTACAGCAGGTACCGCAG | + |
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Preference number: 4 (lower is better) Translates to: PRGYVSEHNGETGFYLTLAARPS*LQQVPQ Trigger: CTGCGGTACCTGCTGTAGTCACGAGGGACGGGCGGC...TAATGTCAAATAAAAACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR TCA 90 bp | CAACAATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACAGAGCCGCCCGTCCCTCGTaGCTACAGCAGGTACCGCAG | + |
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Preference number: 4 (lower is better) Translates to: QQYPKFILDGDSQQSRNRAARPS*LQQVPQ Trigger: CTGCGGTACCTGCTGTAGTCACGAGGGACGGGCGGC...TCTGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATTGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| CDS-3UTR GCA 90 bp | CAACAATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACAGATTGCAGGCTACTCTCTaGCGACCAGGCCGCCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: QQYPKFILDGDSQQSRNRLQATL*RPGRRP Trigger: CGGGCGGCGGCCTGGTCGGCAGAGAGTAGCCTGCAA...TCTGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATTGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| CDS-3UTR TCA 90 bp | AGTTTCCCATACAAGTTCCTACCTGTGTCTCCCTCATCCTTAGAACTGTCTTCCCAAATGTGCTCTTTCTaGAAGCCAGCTCTCACTTGG | + |
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Preference number: 4 (lower is better) Translates to: SFPYKFLPVSPSSLELSSQMCSF*KPALTW Trigger: CCAAGTGAGAGCTGGCTTTCAGAAAGAGCACATTTG...GGAAGACAGTTCTAAGGATGAGGGAGACACAGGTAGGAACTTGTATGGGAAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553192.5 |
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| CDS-3UTR GCA 90 bp | CCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTTATTTGACATTAACCACGGCCGAATGTTaGAGGCTACTCTCTGCCGAC | + |
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Preference number: 4 (lower is better) Translates to: PRGYVSEHNGETGFYLTLTTAEC*RLLSAD Trigger: GTCGGCAGAGAGTAGCCTGCAACATTCGGCCGTGGT...TAATGTCAAATAAAAACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR GCA 90 bp | CTCAACAATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACACCGAGATCATGCCATTaGACTCCAGCCTGGGCGACG | + |
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Preference number: 4 (lower is better) Translates to: LNNIQNSFLMETLSKVGTPRSCH*TPAWAT Trigger: CGTCGCCCAGGCTGGAGTGCAATGGCATGATCTCGG...TGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATTGTTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| CDS-3UTR GCA 90 bp | CTCAACAATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACAACCACGGCCGAATGTTaGAGGCTACTCTCTGCCGAC | + |
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Preference number: 4 (lower is better) Translates to: LNNIQNSFLMETLSKVGTTTAEC*RLLSAD Trigger: GTCGGCAGAGAGTAGCCTGCAACATTCGGCCGTGGT...TGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATTGTTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| 3UTR CAA 72 bp | ACTGCAAATGTGCTCTTTCTGAAAGCCAGCTCTCACTaGGAAATAGGCGAGTTTCCCATACAAGTTCCTACC | + |
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Preference number: 4 (lower is better) Translates to: TANVLFLKASSH*EIGEFPIQVPT Trigger: GGTAGGAACTTGTATGGGAAACTCGCCTATTTCCAAGTGAGAGCTGGCTTTCAGAAAGAGCACATTTGCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553192.5 |
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| CDS-3UTR GCA 90 bp | GGCTTAAAACTCAACCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTAGTGAACAAACCGTATaGCTTCAGCCTGAATGTCAG | + |
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Preference number: 4 (lower is better) Translates to: GLKLNLEVMSQNIMGRLVSEQTV*LQPECQ Trigger: CTGACATTCAGGCTGAAGGCATACGGTTTGTTCACT...AACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGGTTGAGTTTTAAGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR GCA 90 bp | GAAATAGGCGAGTTTCCCATACAAGTTCCTACCTGTGTCTCCCTCATCCTTAGAATCTCCCCACAACACTaGAAATGTGCTCTTTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: EIGEFPIQVPTCVSLILRISPQH*KCALSE Trigger: TTCAGAAAGAGCACATTTGCAGTGTTGTGGGGAGAT...TCTAAGGATGAGGGAGACACAGGTAGGAACTTGTATGGGAAACTCGCCTATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553192.5 |
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| CDS-3UTR TCA 90 bp | GGCTTAAAACTCAACCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTCTTTCTTCTATACTTTaGGTTGTCCCACTTGGGGAT | + |
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Preference number: 4 (lower is better) Translates to: GLKLNLEVMSQNIMGRLVLSSIL*VVPLGD Trigger: ATCCCCAAGTGGGACAACTCAAAGTATAGAAGAAAG...AACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGGTTGAGTTTTAAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR GCA 90 bp | CTCAACAATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACAAATGAGCCGAGATCATaGCATTGCACTCCAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LNNIQNSFLMETLSKVGTNEPRS*HCTPAW Trigger: CCAGGCTGGAGTGCAATGGCATGATCTCGGCTCATT...TGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATTGTTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| CDS-3UTR GCA 90 bp | AATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACAGAAGAGCTGGGAGACAGAGGTTaGAATGAGCCGAGATCATGC | + |
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Preference number: 4 (lower is better) Translates to: NIQNSFLMETLSKVGTEELGDRG*NEPRSC Trigger: GCATGATCTCGGCTCATTGCAACCTCTGTCTCCCAG...CTCTTCTGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| CDS-3UTR TCA 90 bp | AGTTTCCCATACAAGTTCCTACCTGTGTCTCCCTCATCCTTAGAACTGTCTTCCTTCCCAAGATGTAGATaGAAATCTGCATGTTCATGT | + |
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Preference number: 4 (lower is better) Translates to: SFPYKFLPVSPSSLELSSFPRCR*KSACSC Trigger: ACATGAACATGCAGATTTTCATCTACATCTTGGGAA...GGAAGACAGTTCTAAGGATGAGGGAGACACAGGTAGGAACTTGTATGGGAAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553192.5 |
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| CDS-3UTR CCA 90 bp | CCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTTATTTGACATTACAGTTTCAAGAGAAATaGCCGCCAAACAGGACTATG | + |
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Preference number: 4 (lower is better) Translates to: PRGYVSEHNGETGFYLTLQFQEK*PPNRTM Trigger: CATAGTCCTGTTTGGCGGCCATTTCTCTTGAAACTG...TAATGTCAAATAAAAACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR TCA 90 bp | AAAACCACTCAACAATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTCCTGGGCGACGAGAGTaGAACTCCATTTTGTTTCAA | + |
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Preference number: 4 (lower is better) Translates to: KTTQQYPKFILDGDSQQSPGRRE*NSILFQ Trigger: TTGAAACAAAATGGAGTTTCACTCTCGTCGCCCAGG...ACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATTGTTGAGTGGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| CDS-3UTR CCA 90 bp | CCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTTATTTGACATTATTGAGTTGTCCCACTTaGGGATACACAAAGATAGTT | + |
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Preference number: 4 (lower is better) Translates to: PRGYVSEHNGETGFYLTLLSCPT*GYTKIV Trigger: AACTATCTTTGTGTATCCCCAAGTGGGACAACTCAA...TAATGTCAAATAAAAACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR TCA 90 bp | CCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTTATTTGACATTAAAAGCATTAGTTCAGTaGGTAATCTTTCCCAATTGG | + |
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Preference number: 4 (lower is better) Translates to: PRGYVSEHNGETGFYLTLKALVQ*VIFPNW Trigger: CCAATTGGGAAAGATTACTCACTGAACTAATGCTTT...TAATGTCAAATAAAAACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR TCA 90 bp | CTCAACAATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACATTCCCAAGATGTAGATaGAAATCTGCATGTTCATGT | + |
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Preference number: 4 (lower is better) Translates to: LNNIQNSFLMETLSKVGTFPRCR*KSACSC Trigger: ACATGAACATGCAGATTTTCATCTACATCTTGGGAA...TGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATTGTTGAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| 3UTR CAA 72 bp | GCTAAACACTTTCTTCTATACTTTGAGTTGTCCCACTaGGGGATACACAAAGATAGTTTACTGATAAAACTA | + |
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Preference number: 4 (lower is better) Translates to: AKHFLLYFELSH*GIHKDSLLIKL Trigger: TAGTTTTATCAGTAAACTATCTTTGTGTATCCCCAAGTGGGACAACTCAAAGTATAGAAGAAAGTGTTTAGC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR CAA 90 bp | GAAATAGGCGAGTTTCCCATACAAGTTCCTACCTGTGTCTCCCTCATCCTTAGAAACCACGGCCGAATGTaGCAGGCTACTCTCTGCCGA | + |
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Preference number: 5 (lower is better) Translates to: EIGEFPIQVPTCVSLILRNHGRM*QATLCR Trigger: TCGGCAGAGAGTAGCCTGCAACATTCGGCCGTGGTT...TCTAAGGATGAGGGAGACACAGGTAGGAACTTGTATGGGAAACTCGCCTATTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553192.5 |
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| CDS-3UTR CAA 90 bp | GGCTTAAAACTCAACCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTAACCACGGCCGAATGTaGCAGGCTACTCTCTGCCGA | + |
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Preference number: 5 (lower is better) Translates to: GLKLNLEVMSQNIMGRLVNHGRM*QATLCR Trigger: TCGGCAGAGAGTAGCCTGCAACATTCGGCCGTGGTT...AACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGGTTGAGTTTTAAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR CAA 90 bp | AGTTTCCCATACAAGTTCCTACCTGTGTCTCCCTCATCCTTAGAACTGTCTTCCAAAGCCAGCTCTCACTaGGAAATAGGCGAGTTTCCC | + |
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Preference number: 5 (lower is better) Translates to: SFPYKFLPVSPSSLELSSKASSH*EIGEFP Trigger: GGGAAACTCGCCTATTTCCAAGTGAGAGCTGGCTTT...GGAAGACAGTTCTAAGGATGAGGGAGACACAGGTAGGAACTTGTATGGGAAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553192.5 |
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| CDS-3UTR CAA 90 bp | AATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACAGAAGAGGCCGAGATCATGCCATaGCACTCCAGCCTGGGCGAC | + |
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Preference number: 5 (lower is better) Translates to: NIQNSFLMETLSKVGTEEAEIMP*HSSLGD Trigger: GTCGCCCAGGCTGGAGTGCAATGGCATGATCTCGGC...CTCTTCTGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| CDS-3UTR CAA 90 bp | CTCAACAATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACAAACCACGGCCGAATGTaGCAGGCTACTCTCTGCCGA | + |
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Preference number: 5 (lower is better) Translates to: LNNIQNSFLMETLSKVGTNHGRM*QATLCR Trigger: TCGGCAGAGAGTAGCCTGCAACATTCGGCCGTGGTT...TGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATTGTTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| CDS-3UTR CAA 90 bp | GGCTTAAAACTCAACCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTTGAGTTGTCCCACTaGGGGATACACAAAGATAGT | + |
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Preference number: 5 (lower is better) Translates to: GLKLNLEVMSQNIMGRLVFELSH*GIHKDS Trigger: ACTATCTTTGTGTATCCCCAAGTGGGACAACTCAAA...AACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGGTTGAGTTTTAAGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS-3UTR CAA 90 bp | AATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACAGAAGAGCTGCACCACTTCTTTTaGTCAGTGTTCTGGAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: NIQNSFLMETLSKVGTEELHHFF*SVFWRS Trigger: GGACCTCCAGAACACTGACAAAAAGAAGTGGTGCAG...CTCTTCTGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| CDS-3UTR CAA 90 bp | CCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTTATTTGACATTACTTCTATACTTTGAGTaGTCCCACTTGGGGATACAC | + |
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Preference number: 5 (lower is better) Translates to: PRGYVSEHNGETGFYLTLLLYFE*SHLGIH Trigger: GTGTATCCCCAAGTGGGACAACTCAAAGTATAGAAG...TAATGTCAAATAAAAACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS CCA 90 bp | TTTACAGAAACTCGTTTGACAGACATACAGTCAGTTCAATTCCTTTaGCAGATCTGTCTTTCCCCTGAAGGAATGAATTTCCTCAATAGC | + |
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Preference number: 5 (lower is better) Translates to: FTETRLTDIQSVQFL*QICLSPEGMNFLNS Trigger: GCTATTGAGGAAATTCATTCCTTCAGGGGAAAGACAGATCTGCCAAAGGAATTGAACTGACTGTATGTCTGTCAAACGAGTTTCTGTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551316.1 |
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| CDS-3UTR CAA 90 bp | CCTCGAGGTTATGTCTCAGAACATAATGGGGAGACTGGTTTTTATTTGACATTAACTTTCTTCTATACTTaGAGTTGTCCCACTTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: PRGYVSEHNGETGFYLTLTFFYT*SCPTWG Trigger: TCCCCAAGTGGGACAACTCAAAGTATAGAAGAAAGT...TAATGTCAAATAAAAACCAGTCTCCCCATTATGTTCTGAGACATAACCTCGAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS TCA 90 bp | AAAACCCACCAAAACACATGGCTGAATCATTTACAGAAACTCGTTTaGCAGACATACAGTCAGTTCAATTCCTTTGGCAGATCTGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: KTHQNTWLNHLQKLV*QTYSQFNSFGRSVF Trigger: AAAGACAGATCTGCCAAAGGAATTGAACTGACTGTATGTCTGTCAAACGAGTTTCTGTAAATGATTCAGCCATGTGTTTTGGTGGGTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000551316.1 |
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| CDS-3UTR CAA 90 bp | AATATCCAAAATTCATTCTTGATGGAGACTCTCAGCAAAGTAGGAACAGAAGAGATCCAAAATTCATTCTaGATGGAGACTCTCAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: NIQNSFLMETLSKVGTEEIQNSF*METLSK Trigger: TTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGAT...CTCTTCTGTTCCTACTTTGCTGAGAGTCTCCATCAAGAATGAATTTTGGATATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000552085.1 |
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| CDS GCA 72 bp | CATCGTAACCACGGCCGAATGTTGCAGGCTACTCTCTaGCGACCAGGCCGCCGCCCGTCCCTCGTGACTACA | + |
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Preference number: 6 (lower is better) Translates to: HRNHGRMLQATL*RPGRRPSLVTT Trigger: TGTAGTCACGAGGGACGGGCGGCGGCCTGGTCGGCAGAGAGTAGCCTGCAACATTCGGCCGTGGTTACGATG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000266735.9 ENST00000551316.1 ENST00000552085.1 ENST00000553192.5 |
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| CDS CCA 72 bp | GGTACCGCAGGTCCCGAGCCGCAGTTTCAAGAGAAATaGCCGCCAAACAGGACTATGACCTTTCACCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: GTAGPEPQFQEK*PPNRTMTFHLP Trigger: TGGGAGGTGAAAGGTCATAGTCCTGTTTGGCGGCCATTTCTCTTGAAACTGCGGCTCGGGACCTGCGGTACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000266735.9 |
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| CDS CAA 90 bp | AAAAACCCACCAAAACACATGGCTGAATCATTTACAGAAACTCGTTaGACAGACATACAGTCAGTTCAATTCCTTTGGCAGATCTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: KNPPKHMAESFTETR*TDIQSVQFLWQICL Trigger: AAGACAGATCTGCCAAAGGAATTGAACTGACTGTATGTCTGTCAAACGAGTTTCTGTAAATGATTCAGCCATGTGTTTTGGTGGGTTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000551316.1 |
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