Pregenerated sensors for SNRPE (Homo sapiens)
Ensembl gene IDs: ENSG00000182004Ensembl transcript IDs: ENST00000414487.7, ENST00000470492.5, ENST00000483099.5
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGGCAGAATTCCTAATCTGCCTCAAAATCTACAGGTCCAAGCTCTaGGAATACCAAGTGCTCAAGGCAACTGCGACCCTTCAGAAAACT | + |
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Preference number: 1 (lower is better) Translates to: QAEFLICLKIYRSKL*EYQVLKATATLQKT Trigger: AGTTTTCTGAAGGGTCGCAGTTGCCTTGAGCACTTGGTATTCGCAGAGCTTGGACCTGTAGATTTTGAGGCAGATTAGGAATTCTGCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR GCA 90 bp | ACCTCCCAATACTGGAAGCTTACCCATCAGGCAGAATTCCTAATCTaGCTCAAAATCTACAGGTCCAAGCTCTGCGAATACCAAGTGCTC | + |
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Preference number: 1 (lower is better) Translates to: TSQYWKLTHQAEFLI*LKIYRSKLCEYQVL Trigger: GAGCACTTGGTATTCGCAGAGCTTGGACCTGTAGATTTTGAGGCAGATTAGGAATTCTGCCTGATGGGTAAGCTTCCAGTATTGGGAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR CCA 90 bp | GAGCCAGACTTCTTGGTCCTTCCTCACCCGTCCTTAATAACAACATaGCCTTTAGCAGAACTTAAGGCAGGCCTTATTCATCTTTCAAGA | + |
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Preference number: 1 (lower is better) Translates to: EPDFLVLPHPSLITT*PLAELKAGLIHLSR Trigger: TCTTGAAAGATGAATAAGGCCTGCCTTAAGTTCTGCTAAAGGCCATGTTGTTATTAAGGACGGGTGAGGAAGGACCAAGAAGTCTGGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR GCA 90 bp | AACAGCAGATGCTCACTATCTAACAGGATTCTAACTAGAACCATGTaGGATACTGGGGGAAGGGAAACCTGTCCATATAAGAATTCAACC | + |
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Preference number: 1 (lower is better) Translates to: NSRCSLSNRILTRTM*DTGGRETCPYKNST Trigger: GGTTGAATTCTTATATGGACAGGTTTCCCTTCCCCCAGTATCGCACATGGTTCTAGTTAGAATCCTGTTAGATAGTGAGCATCTGCTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR GCA 90 bp | GTCTGTTTCACTGTATTGATTCAACAGTGTCTAGCTAACAGCAGATaGTCACTATCTAACAGGATTCTAACTAGAACCATGTGCGATACT | + |
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Preference number: 1 (lower is better) Translates to: VCFTVLIQQCLANSR*SLSNRILTRTMCDT Trigger: AGTATCGCACATGGTTCTAGTTAGAATCCTGTTAGATAGTGAGCATCTGCTGTTAGCTAGACACTGTTGAATCAATACAGTGAAACAGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR CAA 90 bp | AAAAGTCTCCTTCACAGGCATGTAGAAAAGCAGGAGCCAGACTTCTaGGTCCTTCCTCACCCGTCCTTAATAACAACATGGCCTTTAGCA | + |
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Preference number: 2 (lower is better) Translates to: KSLLHRHVEKQEPDF*VLPHPSLITTWPLA Trigger: TGCTAAAGGCCATGTTGTTATTAAGGACGGGTGAGGAAGGACCAAGAAGTCTGGCTCCTGCTTTTCTACATGCCTGTGAAGGAGACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR GCA 90 bp | AAGCAGGAGCCAGACTTCTTGGTCCTTCCTCACCCGTCCTTAATAACAACATGGGGCATTAAAACCACCTaGTTACCTGTCTGTTTCACT | + |
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Preference number: 2 (lower is better) Translates to: KQEPDFLVLPHPSLITTWGIKTT*LPVCFT Trigger: AGTGAAACAGACAGGTAAGCAGGTGGTTTTAATGCC...CCATGTTGTTATTAAGGACGGGTGAGGAAGGACCAAGAAGTCTGGCTCCTGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR CCA 90 bp | GCATGGTTCAAAGCTGGATACACTTCTGCATTCACCTACAAATCTCCTCTATCTTCCACCTCCCAATACTaGAAGCTTACCCATCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: AWFKAGYTSAFTYKSPLSSTSQY*KLTHQA Trigger: TGCCTGATGGGTAAGCTTCCAGTATTGGGAGGTGGA...AGATAGAGGAGATTTGTAGGTGAATGCAGAAGTGTATCCAGCTTTGAACCATGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR GCA 90 bp | TCTAACAGGATTCTAACTAGAACCATGTGCGATACTGGGGGAAGGGAAACCTGTTTTGCCTACCAGCTATaGTTGTGGTCCTTTTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: SNRILTRTMCDTGGRETCFAYQL*LWSFSD Trigger: ATCTGAAAAGGACCACAAGCATAGCTGGTAGGCAAA...ACAGGTTTCCCTTCCCCCAGTATCGCACATGGTTCTAGTTAGAATCCTGTTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR GCA 90 bp | GAAACTCTGGTATTCCAGCATCCAGAACTACAAGTGATGAAGACTTTTGTTAGTTACAGGTCCAAGCTCTaGGAATACCAAGTGCTCAAG | + |
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Preference number: 2 (lower is better) Translates to: ETLVFQHPELQVMKTFVSYRSKL*EYQVLK Trigger: CTTGAGCACTTGGTATTCGCAGAGCTTGGACCTGTA...ACTAACAAAAGTCTTCATCACTTGTAGTTCTGGATGCTGGAATACCAGAGTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR GCA 90 bp | GAGGAATATAGATGGAATGCATGGTTCAAAGCTGGATACACTTCTGCATTCACCCTAGCTAACAGCAGATaGTCACTATCTAACAGGATT | + |
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Preference number: 2 (lower is better) Translates to: EEYRWNAWFKAGYTSAFTLANSR*SLSNRI Trigger: AATCCTGTTAGATAGTGAGCATCTGCTGTTAGCTAG...GGTGAATGCAGAAGTGTATCCAGCTTTGAACCATGCATTCCATCTATATTCCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR TCA 90 bp | GCACTTCATTCTTTCCCTATATCCAAATACTTCTCACATTCTGATCTTAGCGATACAAAGACCTCACAGTaGCTCAATGAGAGTGTTGAG | + |
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Preference number: 2 (lower is better) Translates to: ALHSFPISKYFSHSDLSDTKTSQ*LNESVE Trigger: CTCAACACTCTCATTGAGTCACTGTGAGGTCTTTGT...ATCGCTAAGATCAGAATGTGAGAAGTATTTGGATATAGGGAAAGAATGAAGTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR GCA 90 bp | CTTCTGCATTCACCTACAAATCTCCTCTATCTCGGAAAGGATTTCTTTTATTCATTCTGCCTAACAATTTaGCTACCAGCTATGCTTGTG | + |
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Preference number: 2 (lower is better) Translates to: LLHSPTNLLYLGKDFFYSFCLTI*LPAMLV Trigger: CACAAGCATAGCTGGTAGGCAAATTGTTAGGCAGAA...TGAATAAAAGAAATCCTTTCCGAGATAGAGGAGATTTGTAGGTGAATGCAGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR CCA 90 bp | GAGGAATATAGATGGAATGCATGGTTCAAAGCTGGATACACTTCTGCATTCACCAATACCAGCAACGAATaGTGTTACTGTGTAAAAAGT | + |
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Preference number: 2 (lower is better) Translates to: EEYRWNAWFKAGYTSAFTNTSNE*CYCVKS Trigger: ACTTTTTACACAGTAACACCATTCGTTGCTGGTATT...GGTGAATGCAGAAGTGTATCCAGCTTTGAACCATGCATTCCATCTATATTCCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR CAA 90 bp | AAGCTGGATACACTTCTGCATTCACCTACAAATCTCCTCTATCTCGGAAAGGATCAGGAGCCAGACTTCTaGGTCCTTCCTCACCCGTCC | + |
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Preference number: 3 (lower is better) Translates to: KLDTLLHSPTNLLYLGKDQEPDF*VLPHPS Trigger: GGACGGGTGAGGAAGGACCAAGAAGTCTGGCTCCTG...ATCCTTTCCGAGATAGAGGAGATTTGTAGGTGAATGCAGAAGTGTATCCAGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR GCA 72 bp | TTCCTAATCTGCCTCAAAATCTACAGGTCCAAGCTCTaGGAATACCAAGTGCTCAAGGCAACTGCGACCCTT | + |
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Preference number: 3 (lower is better) Translates to: FLICLKIYRSKL*EYQVLKATATL Trigger: AAGGGTCGCAGTTGCCTTGAGCACTTGGTATTCGCAGAGCTTGGACCTGTAGATTTTGAGGCAGATTAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR CAA 90 bp | AAGCAGGAGCCAGACTTCTTGGTCCTTCCTCACCCGTCCTTAATAACAACATGGGTCTGTTTCACTGTATaGATTCAACAGTGTCTAGCT | + |
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Preference number: 3 (lower is better) Translates to: KQEPDFLVLPHPSLITTWVCFTV*IQQCLA Trigger: AGCTAGACACTGTTGAATCAATACAGTGAAACAGAC...CCATGTTGTTATTAAGGACGGGTGAGGAAGGACCAAGAAGTCTGGCTCCTGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR GCA 72 bp | TACTGGAAGCTTACCCATCAGGCAGAATTCCTAATCTaGCTCAAAATCTACAGGTCCAAGCTCTGCGAATAC | + |
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Preference number: 3 (lower is better) Translates to: YWKLTHQAEFLI*LKIYRSKLCEY Trigger: GTATTCGCAGAGCTTGGACCTGTAGATTTTGAGGCAGATTAGGAATTCTGCCTGATGGGTAAGCTTCCAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR-3UTR CAA 90 bp | AGGATTCTAACTAGAACCATGTGCGATACTGGGGGAAGGGAAACCTGTCCATATATTCTGCCTAACAATTaGCCTACCAGCTATGCTTGT | + |
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Preference number: 3 (lower is better) Translates to: RILTRTMCDTGGRETCPYILPNN*PTSYAC Trigger: ACAAGCATAGCTGGTAGGCAAATTGTTAGGCAGAAT...ATATGGACAGGTTTCCCTTCCCCCAGTATCGCACATGGTTCTAGTTAGAATCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR GCA 72 bp | TCAAAATCTACAGGTCCAAGCTCTGCGAATACCAAGTaGTCAAGGCAACTGCGACCCTTCAGAAAACTAAAT | + |
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Preference number: 3 (lower is better) Translates to: SKSTGPSSANTK*SRQLRPFRKLN Trigger: ATTTAGTTTTCTGAAGGGTCGCAGTTGCCTTGAGCACTTGGTATTCGCAGAGCTTGGACCTGTAGATTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR GCA 72 bp | TGCTCACTATCTAACAGGATTCTAACTAGAACCATGTaGGATACTGGGGGAAGGGAAACCTGTCCATATAAG | + |
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Preference number: 3 (lower is better) Translates to: CSLSNRILTRTM*DTGGRETCPYK Trigger: CTTATATGGACAGGTTTCCCTTCCCCCAGTATCGCACATGGTTCTAGTTAGAATCCTGTTAGATAGTGAGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR CCA 72 bp | TTCTTGGTCCTTCCTCACCCGTCCTTAATAACAACATaGCCTTTAGCAGAACTTAAGGCAGGCCTTATTCAT | + |
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Preference number: 3 (lower is better) Translates to: FLVLPHPSLITT*PLAELKAGLIH Trigger: ATGAATAAGGCCTGCCTTAAGTTCTGCTAAAGGCCATGTTGTTATTAAGGACGGGTGAGGAAGGACCAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| 3UTR CAA 72 bp | CTTCACAGGCATGTAGAAAAGCAGGAGCCAGACTTCTaGGTCCTTCCTCACCCGTCCTTAATAACAACATGG | + |
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Preference number: 4 (lower is better) Translates to: LHRHVEKQEPDF*VLPHPSLITTW Trigger: CCATGTTGTTATTAAGGACGGGTGAGGAAGGACCAAGAAGTCTGGCTCCTGCTTTTCTACATGCCTGTGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR TCA 90 bp | CTCCACCTCCCAATACTGGAAGCTTACCCATCAGGCAGAATTCCTAATCTGCCTACAAAGACCTCACAGTaGCTCAATGAGAGTGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: LHLPILEAYPSGRIPNLPTKTSQ*LNESVE Trigger: CTCAACACTCTCATTGAGTCACTGTGAGGTCTTTGT...AGGCAGATTAGGAATTCTGCCTGATGGGTAAGCTTCCAGTATTGGGAGGTGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR GCA 90 bp | AAGCAGGAGCCAGACTTCTTGGTCCTTCCTCACCCGTCCTTAATAACAACATGGTTCTGCCTAACAATTTaGCTACCAGCTATGCTTGTG | + |
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Preference number: 4 (lower is better) Translates to: KQEPDFLVLPHPSLITTWFCLTI*LPAMLV Trigger: CACAAGCATAGCTGGTAGGCAAATTGTTAGGCAGAA...CCATGTTGTTATTAAGGACGGGTGAGGAAGGACCAAGAAGTCTGGCTCCTGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR CCA 90 bp | GGTTCAAAGCTGGATACACTTCTGCATTCACCTACAAATCTCCTCTATCTCGGATCCACCTCCCAATACTaGAAGCTTACCCATCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: GSKLDTLLHSPTNLLYLGSTSQY*KLTHQA Trigger: TGCCTGATGGGTAAGCTTCCAGTATTGGGAGGTGGA...TCCGAGATAGAGGAGATTTGTAGGTGAATGCAGAAGTGTATCCAGCTTTGAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR GCA 90 bp | CTAACTAGAACCATGTGCGATACTGGGGGAAGGGAAACCTGTCCATATAAGAATCTAACTAGAACCATGTaGGATACTGGGGGAAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: LTRTMCDTGGRETCPYKNLTRTM*DTGGRE Trigger: TTCCCTTCCCCCAGTATCGCACATGGTTCTAGTTAG...ATTCTTATATGGACAGGTTTCCCTTCCCCCAGTATCGCACATGGTTCTAGTTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR GCA 90 bp | TCTGCCTCAAAATCTACAGGTCCAAGCTCTGCGAATACCAAGTGCTCAAGGCAAGGCATTAAAACCACCTaGTTACCTGTCTGTTTCACT | + |
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Preference number: 4 (lower is better) Translates to: SASKSTGPSSANTKCSRQGIKTT*LPVCFT Trigger: AGTGAAACAGACAGGTAAGCAGGTGGTTTTAATGCC...TTGCCTTGAGCACTTGGTATTCGCAGAGCTTGGACCTGTAGATTTTGAGGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR GCA 90 bp | TGGTCCTTTTCAGATTACCAATCTCAGTCTCTTTCCTGTAAACTCTTAACTGATTCTGCGAATACCAAGTaGTCAAGGCAACTGCGACCC | + |
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Preference number: 4 (lower is better) Translates to: WSFSDYQSQSLSCKLLTDSANTK*SRQLRP Trigger: GGGTCGCAGTTGCCTTGAGCACTTGGTATTCGCAGA...ATCAGTTAAGAGTTTACAGGAAAGAGACTGAGATTGGTAATCTGAAAAGGACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR GCA 90 bp | TCTAACAGGATTCTAACTAGAACCATGTGCGATACTGGGGGAAGGGAAACCTGTCTAGCTAACAGCAGATaGTCACTATCTAACAGGATT | + |
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Preference number: 4 (lower is better) Translates to: SNRILTRTMCDTGGRETCLANSR*SLSNRI Trigger: AATCCTGTTAGATAGTGAGCATCTGCTGTTAGCTAG...ACAGGTTTCCCTTCCCCCAGTATCGCACATGGTTCTAGTTAGAATCCTGTTAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR CCA 90 bp | CTAACTAGAACCATGTGCGATACTGGGGGAAGGGAAACCTGTCCATATAAGAATCAGGAGGAATATAGATaGAATGCATGGTTCAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: LTRTMCDTGGRETCPYKNQEEYR*NAWFKA Trigger: AGCTTTGAACCATGCATTCCATCTATATTCCTCCTG...ATTCTTATATGGACAGGTTTCCCTTCCCCCAGTATCGCACATGGTTCTAGTTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR GCA 90 bp | CTGCGACCCTTCAGAAAACTAAATACCAGCAACGAATGGTGTTACTGTGTAAAAAGCTGGATACACTTCTaGATTCACCTACAAATCTCC | + |
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Preference number: 4 (lower is better) Translates to: LRPFRKLNTSNEWCYCVKSWIHF*IHLQIS Trigger: GGAGATTTGTAGGTGAATGCAGAAGTGTATCCAGCT...TTTTACACAGTAACACCATTCGTTGCTGGTATTTAGTTTTCTGAAGGGTCGCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR GCA 90 bp | CTGACCCCATTAAATAATGTACCCAACATATTTAGGTTAGAAACTCTGGTATTCTACAGGTCCAAGCTCTaGGAATACCAAGTGCTCAAG | + |
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Preference number: 4 (lower is better) Translates to: LTPLNNVPNIFRLETLVFYRSKL*EYQVLK Trigger: CTTGAGCACTTGGTATTCGCAGAGCTTGGACCTGTA...GAATACCAGAGTTTCTAACCTAAATATGTTGGGTACATTATTTAATGGGGTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR CCA 90 bp | AGATGGAATGCATGGTTCAAAGCTGGATACACTTCTGCATTCACCTACAAATCTTACCAGCTATGCTTGTaGTCCTTTTCAGATTACCAA | + |
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Preference number: 4 (lower is better) Translates to: RWNAWFKAGYTSAFTYKSYQLCL*SFSDYQ Trigger: TTGGTAATCTGAAAAGGACCACAAGCATAGCTGGTA...AGATTTGTAGGTGAATGCAGAAGTGTATCCAGCTTTGAACCATGCATTCCATCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR GCA 90 bp | GCACTTCATTCTTTCCCTATATCCAAATACTTCTCACATTCTGATCTTAGCGATTTTGCCTACCAGCTATaGTTGTGGTCCTTTTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: ALHSFPISKYFSHSDLSDFAYQL*LWSFSD Trigger: ATCTGAAAAGGACCACAAGCATAGCTGGTAGGCAAA...ATCGCTAAGATCAGAATGTGAGAAGTATTTGGATATAGGGAAAGAATGAAGTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR CCA 90 bp | AGATGGAATGCATGGTTCAAAGCTGGATACACTTCTGCATTCACCTACAAATCTTATAGATGGAATGCATaGTTCAAAGCTGGATACACT | + |
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Preference number: 4 (lower is better) Translates to: RWNAWFKAGYTSAFTYKSYRWNA*FKAGYT Trigger: AGTGTATCCAGCTTTGAACCATGCATTCCATCTATA...AGATTTGTAGGTGAATGCAGAAGTGTATCCAGCTTTGAACCATGCATTCCATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR CCA 90 bp | CTGACCCCATTAAATAATGTACCCAACATATTTAGGTTAGAAACTCTGGTATTCAATACCAGCAACGAATaGTGTTACTGTGTAAAAAGT | + |
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Preference number: 4 (lower is better) Translates to: LTPLNNVPNIFRLETLVFNTSNE*CYCVKS Trigger: ACTTTTTACACAGTAACACCATTCGTTGCTGGTATT...GAATACCAGAGTTTCTAACCTAAATATGTTGGGTACATTATTTAATGGGGTCAG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS CCA 90 bp | CAACTACCCGCGCTTTCTTCCAGTCTTGGTAGCCCCGGGGGCTCATaGGATGTGGATCCGTACTCCACTATCCCAGGCCTGCCCTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: QLPALSSSLGSPGGS*DVDPYSTIPGLPSA Trigger: GGCTGAGGGCAGGCCTGGGATAGTGGAGTACGGATCCACATCCCATGAGCCCCCGGGGCTACCAAGACTGGAAGAAAGCGCGGGTAGTTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS-3UTR CAA 90 bp | CTCCACCTCCCAATACTGGAAGCTTACCCATCAGGCAGAATTCCTAATCTGCCTCAGGAGCCAGACTTCTaGGTCCTTCCTCACCCGTCC | + |
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Preference number: 5 (lower is better) Translates to: LHLPILEAYPSGRIPNLPQEPDF*VLPHPS Trigger: GGACGGGTGAGGAAGGACCAAGAAGTCTGGCTCCTG...AGGCAGATTAGGAATTCTGCCTGATGGGTAAGCTTCCAGTATTGGGAGGTGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS GCA 90 bp | GACGCTATTCCCGTCTCACCTTTGTTTACTAAACGCGAGGTCTGGTaGTTACGCAAACAACAAGTGCCCAGCTGGGCATTCGTTACGGGT | + |
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Preference number: 5 (lower is better) Translates to: DAIPVSPLFTKREVW*LRKQQVPSWAFVTG Trigger: ACCCGTAACGAATGCCCAGCTGGGCACTTGTTGTTTGCGTAAGCACCAGACCTCGCGTTTAGTAAACAAAGGTGAGACGGGAATAGCGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS CCA 90 bp | GACGACGCTATTCCCGTCTCACCTTTGTTTACTAAACGCGAGGTCTaGTGCTTACGCAAACAACAAGTGCCCAGCTGGGCATTCGTTACG | + |
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Preference number: 5 (lower is better) Translates to: DDAIPVSPLFTKREV*CLRKQQVPSWAFVT Trigger: CGTAACGAATGCCCAGCTGGGCACTTGTTGTTTGCGTAAGCACCAGACCTCGCGTTTAGTAAACAAAGGTGAGACGGGAATAGCGTCGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS CCA 90 bp | ACTAAACGCGAGGTCTGGTGCTTACGCAAACAACAAGTGCCCAGCTaGGCATTCGTTACGGGTCTTCTAAAGACTAAAGAACATCCATTC | + |
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Preference number: 5 (lower is better) Translates to: TKREVWCLRKQQVPS*AFVTGLLKTKEHPF Trigger: GAATGGATGTTCTTTAGTCTTTAGAAGACCCGTAACGAATGCCCAGCTGGGCACTTGTTGTTTGCGTAAGCACCAGACCTCGCGTTTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS-3UTR CAA 90 bp | AAGCAGGAGCCAGACTTCTTGGTCCTTCCTCACCCGTCCTTAATAACAACATGGGACTCAATGAGAGTGTaGAGCAATACTGACCCCATT | + |
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Preference number: 5 (lower is better) Translates to: KQEPDFLVLPHPSLITTWDSMRV*SNTDPI Trigger: AATGGGGTCAGTATTGCTCAACACTCTCATTGAGTC...CCATGTTGTTATTAAGGACGGGTGAGGAAGGACCAAGAAGTCTGGCTCCTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR CAA 90 bp | TCTAACAGGATTCTAACTAGAACCATGTGCGATACTGGGGGAAGGGAAACCTGTGCCTACCAGCTATGCTaGTGGTCCTTTTCAGATTAC | + |
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Preference number: 5 (lower is better) Translates to: SNRILTRTMCDTGGRETCAYQLC*WSFSDY Trigger: GTAATCTGAAAAGGACCACAAGCATAGCTGGTAGGC...ACAGGTTTCCCTTCCCCCAGTATCGCACATGGTTCTAGTTAGAATCCTGTTAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR CAA 90 bp | CTCCACCTCCCAATACTGGAAGCTTACCCATCAGGCAGAATTCCTAATCTGCCTATTCTGCCTAACAATTaGCCTACCAGCTATGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: LHLPILEAYPSGRIPNLPILPNN*PTSYAC Trigger: ACAAGCATAGCTGGTAGGCAAATTGTTAGGCAGAAT...AGGCAGATTAGGAATTCTGCCTGATGGGTAAGCTTCCAGTATTGGGAGGTGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS-3UTR CAA 90 bp | TCTAACAGGATTCTAACTAGAACCATGTGCGATACTGGGGGAAGGGAAACCTGTGTCTGTTTCACTGTATaGATTCAACAGTGTCTAGCT | + |
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Preference number: 5 (lower is better) Translates to: SNRILTRTMCDTGGRETCVCFTV*IQQCLA Trigger: AGCTAGACACTGTTGAATCAATACAGTGAAACAGAC...ACAGGTTTCCCTTCCCCCAGTATCGCACATGGTTCTAGTTAGAATCCTGTTAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414487.7 |
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| CDS CCA 72 bp | CTTCCAGTCTTGGTAGCCCCGGGGGCTCATGGGATGTaGATCCGTACTCCACTATCCCAGGCCTGCCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LPVLVAPGAHGM*IRTPLSQACPQ Trigger: CTGAGGGCAGGCCTGGGATAGTGGAGTACGGATCCACATCCCATGAGCCCCCGGGGCTACCAAGACTGGAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS CCA 72 bp | GCGCTTTCTTCCAGTCTTGGTAGCCCCGGGGGCTCATaGGATGTGGATCCGTACTCCACTATCCCAGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: ALSSSLGSPGGS*DVDPYSTIPGL Trigger: CAGGCCTGGGATAGTGGAGTACGGATCCACATCCCATGAGCCCCCGGGGCTACCAAGACTGGAAGAAAGCGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS CAA 72 bp | GTTTTCACTCCGCACCTGAAGTTCTCTTCCCTCCTTTaGCCGCGTCCATTCCTGCATTCCCCACGGCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: VFTPHLKFSSLL*PRPFLHSPRQG Trigger: CCCCTGCCGTGGGGAATGCAGGAATGGACGCGGCAAAAGGAGGGAAGAGAACTTCAGGTGCGGAGTGAAAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS GCA 72 bp | CACCTGAATCCGCGATCTCTCCTAGTCCTGACATCCTaGGTAGGATACGATGGGCTGCACCATAACCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: HLNPRSLLVLTS*VGYDGLHHNLL Trigger: CAGAAGGTTATGGTGCAGCCCATCGTATCCTACGCAGGATGTCAGGACTAGGAGAGATCGCGGATTCAGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470492.5 |
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| CDS GCA 72 bp | CCGTATTCTGACCCGAACCTCCTAGTCCTGACATCCTaGGTAGGATACGATGGGCTGCACCATAACCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: PYSDPNLLVLTS*VGYDGLHHNLL Trigger: CAGAAGGTTATGGTGCAGCCCATCGTATCCTACGCAGGATGTCAGGACTAGGAGGTTCGGGTCAGAATACGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS GCA 72 bp | CCCGTCTCACCTTTGTTTACTAAACGCGAGGTCTGGTaGTTACGCAAACAACAAGTGCCCAGCTGGGCATTC | + |
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Preference number: 6 (lower is better) Translates to: PVSPLFTKREVW*LRKQQVPSWAF Trigger: GAATGCCCAGCTGGGCACTTGTTGTTTGCGTAAGCACCAGACCTCGCGTTTAGTAAACAAAGGTGAGACGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS CCA 72 bp | ATTCCCGTCTCACCTTTGTTTACTAAACGCGAGGTCTaGTGCTTACGCAAACAACAAGTGCCCAGCTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: IPVSPLFTKREV*CLRKQQVPSWA Trigger: TGCCCAGCTGGGCACTTGTTGTTTGCGTAAGCACCAGACCTCGCGTTTAGTAAACAAAGGTGAGACGGGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS CAA 90 bp | CTCTGCTTCCTGAAACAACCGGACGACGCTATTCCCGTCTCACCTTaGTTTACTAAACGCGAGGTCTGGTGCTTACGCAAACAACAAGTG | + |
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Preference number: 6 (lower is better) Translates to: LCFLKQPDDAIPVSP*FTKREVWCLRKQQV Trigger: CACTTGTTGTTTGCGTAAGCACCAGACCTCGCGTTTAGTAAACAAAGGTGAGACGGGAATAGCGTCGTCCGGTTGTTTCAGGAAGCAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS CAA 72 bp | CTGAAACAACCGGACGACGCTATTCCCGTCTCACCTTaGTTTACTAAACGCGAGGTCTGGTGCTTACGCAAA | + |
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Preference number: 6 (lower is better) Translates to: LKQPDDAIPVSP*FTKREVWCLRK Trigger: TTTGCGTAAGCACCAGACCTCGCGTTTAGTAAACAAAGGTGAGACGGGAATAGCGTCGTCCGGTTGTTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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| CDS CCA 72 bp | GAGGTCTGGTGCTTACGCAAACAACAAGTGCCCAGCTaGGCATTCGTTACGGGTCTTCTAAAGACTAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: EVWCLRKQQVPS*AFVTGLLKTKE Trigger: TTCTTTAGTCTTTAGAAGACCCGTAACGAATGCCCAGCTGGGCACTTGTTGTTTGCGTAAGCACCAGACCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483099.5 |
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