RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SNRPD2 (Homo sapiens)

Ensembl gene IDs: ENSG00000125743

Ensembl transcript IDs: ENST00000391932.7, ENST00000587579.1, ENST00000588301.5, ENST00000588599.5

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp ATTTCCAAATGCCCGCCGGCCGTGACTTCGGGGGCGCGGCCTCCGTaGAGCCAATCCGCTCCTCGCTTCGGAGACAGGCACCGCCCCTCT +
Preference number: 5 (lower is better)
Translates to: ISKCPPAVTSGARPP*SQSAPRFGDRHRPS
Trigger: AGAGGGGCGGTGCCTGTCTCCGAAGCGAGGAGCGGATTGGCTTCACGGAGGCCGCGCCCCCGAAGTCACGGCCGGCGGGCATTTGGAAAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000587579.1
ENST00000588301.5
CDS CCA 90 bp CAATCCGCTCCTCGCTTCGGAGACAGGCACCGCCCCTCTTCCCTCTaGGACGCGTTACTGACGTATCTACTGATCTTTCCGACCCTGCGC +
Preference number: 5 (lower is better)
Translates to: QSAPRFGDRHRPSSL*DALLTYLLIFPTLR
Trigger: GCGCAGGGTCGGAAAGATCAGTAGATACGTCAGTAACGCGTCCCAGAGGGAAGAGGGGCGGTGCCTGTCTCCGAAGCGAGGAGCGGATTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587579.1
CDS GCA 90 bp CCAGGGCGTTATCTGATAAAGCTGTCCCCTCTCCCGAAGTCACGATaGGTCAAAGGCCCCACGCCCGTTCTCAAACTCATCAGGAGAAAA +
Preference number: 5 (lower is better)
Translates to: PGRYLIKLSPLPKSR*VKGPTPVLKLIRRK
Trigger: TTTTCTCCTGATGAGTTTGAGAACGGGCGTGGGGCCTTTGACGCATCGTGACTTCGGGAGAGGGGACAGCTTTATCAGATAACGCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000588599.5
CDS CCA 90 bp TCTCTGCCTCCACCCACGTTCCCTGACAGTCTGTTCTCCACAGAGTaGTCTGAGGGGGTTGTGCTAAAACATGATGGTCACTACGCTCTC +
Preference number: 5 (lower is better)
Translates to: SLPPPTFPDSLFSTE*SEGVVLKHDGHYAL
Trigger: GAGAGCGTAGTGACCATCATGTTTTAGCACAACCCCCTCAGACCACTCTGTGGAGAACAGACTGTCAGGGAACGTGGGTGGAGGCAGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000391932.7
CDS TCA 72 bp TGCCCGCCGGCCGTGACTTCGGGGGCGCGGCCTCCGTaGAGCCAATCCGCTCCTCGCTTCGGAGACAGGCAC +
Preference number: 6 (lower is better)
Translates to: CPPAVTSGARPP*SQSAPRFGDRH
Trigger: GTGCCTGTCTCCGAAGCGAGGAGCGGATTGGCTTCACGGAGGCCGCGCCCCCGAAGTCACGGCCGGCGGGCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000587579.1
ENST00000588301.5
CDS TCA 72 bp GGAAATGACAAGCTATTTCCAAATGCCCGCCGGCCGTaGCTTCGGGGGCGCGGCCTCCGTGAAGCCAATCCG +
Preference number: 6 (lower is better)
Translates to: GNDKLFPNARRP*LRGRGLREANP
Trigger: CGGATTGGCTTCACGGAGGCCGCGCCCCCGAAGTCACGGCCGGCGGGCATTTGGAAATAGCTTGTCATTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000587579.1
ENST00000588301.5
CDS CCA 72 bp CCTCGCTTCGGAGACAGGCACCGCCCCTCTTCCCTCTaGGACGCGTTACTGACGTATCTACTGATCTTTCCG +
Preference number: 6 (lower is better)
Translates to: PRFGDRHRPSSL*DALLTYLLIFP
Trigger: CGGAAAGATCAGTAGATACGTCAGTAACGCGTCCCAGAGGGAAGAGGGGCGGTGCCTGTCTCCGAAGCGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587579.1
CDS GCA 72 bp TATCTGATAAAGCTGTCCCCTCTCCCGAAGTCACGATaGGTCAAAGGCCCCACGCCCGTTCTCAAACTCATC +
Preference number: 6 (lower is better)
Translates to: YLIKLSPLPKSR*VKGPTPVLKLI
Trigger: GATGAGTTTGAGAACGGGCGTGGGGCCTTTGACGCATCGTGACTTCGGGAGAGGGGACAGCTTTATCAGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000588599.5
CDS CCA 72 bp CCACCCACGTTCCCTGACAGTCTGTTCTCCACAGAGTaGTCTGAGGGGGTTGTGCTAAAACATGATGGTCAC +
Preference number: 6 (lower is better)
Translates to: PPTFPDSLFSTE*SEGVVLKHDGH
Trigger: GTGACCATCATGTTTTAGCACAACCCCCTCAGACCACTCTGTGGAGAACAGACTGTCAGGGAACGTGGGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000391932.7
CDS CCA 72 bp TGCGACCCACTTCCGTTGGCGCCGTTTCTTGAAGAATaGTACAGGTTGAAGGAGGGAAATGACAAGCTATTT +
Preference number: 6 (lower is better)
Translates to: CDPLPLAPFLEE*YRLKEGNDKLF
Trigger: AAATAGCTTGTCATTTCCCTCCTTCAACCTGTACCATTCTTCAAGAAACGGCGCCAACGGAAGTGGGTCGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000588301.5