Pregenerated sensors for SNRPA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000131876Ensembl transcript IDs: ENST00000558036.5, ENST00000559686.3, ENST00000560307.5, ENST00000560383.5, ENST00000560433.5, ENST00000561187.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCACTGCACCCAACCCATCAAATACTTTATCTTCAAAGAGCATTTAAAGAGATTGGCATTCCAGAGTCATaGCATCTAAATGGTTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: PLHPTHQILYLQRAFKEIGIPES*HLNGCE Trigger: CTCACAACCATTTAGATGCCATGACTCTGGAATGCC...AATCTCTTTAAATGCTCTTTGAAGATAAAGTATTTGATGGGTTGGGTGCAGTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559686.3 |
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| CDS-3UTR GCA 90 bp | GAGCCACTGCACCCAACCCATCAAATACTTTATCTTCAAAGAGCATTTAAAGAGCTCAGGCTCCCAAAGTaGTGGGATTACAGGCGTGAG | + |
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Preference number: 4 (lower is better) Translates to: EPLHPTHQILYLQRAFKELRLPK*WDYRRE Trigger: CTCACGCCTGTAATCCCAGCACTTTGGGAGCCTGAG...CTCTTTAAATGCTCTTTGAAGATAAAGTATTTGATGGGTTGGGTGCAGTGGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559686.3 |
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| CDS-3UTR GCA 90 bp | GGCATTCCAGAGTCATGGCATCTAAATGGTTGTGAGTTACACTCTGAGTGTAACTTTGTTCACCTGATCTaGGTTCTCTGCCAGGGATCT | + |
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Preference number: 4 (lower is better) Translates to: GIPESWHLNGCELHSECNFVHLI*VLCQGS Trigger: AGATCCCTGGCAGAGAACGCAGATCAGGTGAACAAA...GTTACACTCAGAGTGTAACTCACAACCATTTAGATGCCATGACTCTGGAATGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559686.3 |
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| CDS-3UTR TCA 90 bp | GCATTTAAAGAGATTTCATATATTAGATTTGATGTAAGGAGGCACTACTCTGGCCACCATTTGTTCACCTaGTCTGCGTTCTCTGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: AFKEISYIRFDVRRHYSGHHLFT*SAFSAR Trigger: CCTGGCAGAGAACGCAGATCAGGTGAACAAATGGTG...GCCAGAGTAGTGCCTCCTTACATCAAATCTAATATATGAAATCTCTTTAAATGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559686.3 |
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| CDS-3UTR CCA 90 bp | GCATTTAAAGAGATTTCATATATTAGATTTGATGTAAGGAGGCACTACTCTGGCGGCATTCCAGAGTCATaGCATCTAAATGGTTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: AFKEISYIRFDVRRHYSGGIPES*HLNGCE Trigger: CTCACAACCATTTAGATGCCATGACTCTGGAATGCC...GCCAGAGTAGTGCCTCCTTACATCAAATCTAATATATGAAATCTCTTTAAATGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559686.3 |
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| CDS GCA 90 bp | GGCAAAGCTGATGGGACTCTGGAGCAACCTATTCACACTGGGAACTaGAAGCCAGAATCTTGGTGTAAGTGGGCTTTCCTGCTAGCGCCA | + |
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Preference number: 5 (lower is better) Translates to: GKADGTLEQPIHTGN*KPESWCKWAFLLAP Trigger: TGGCGCTAGCAGGAAAGCCCACTTACACCAAGATTCTGGCTTGCAGTTCCCAGTGTGAATAGGTTGCTCCAGAGTCCCATCAGCTTTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560433.5 |
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| CDS CCA 90 bp | ACTCTGGAGCAACCTATTCACACTGGGAACTGCAAGCCAGAATCTTaGTGTAAGTGGGCTTTCCTGCTAGCGCCAGCTTCAGCGTCTAAG | + |
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Preference number: 5 (lower is better) Translates to: TLEQPIHTGNCKPES*CKWAFLLAPASASK Trigger: CTTAGACGCTGAAGCTGGCGCTAGCAGGAAAGCCCACTTACACCAAGATTCTGGCTTGCAGTTCCCAGTGTGAATAGGTTGCTCCAGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560433.5 |
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| CDS GCA 90 bp | GCAGACAATCCACTGTTAAGACTGCTCACCGTGGCCTCAGCACTTTaGGAACTTCGGAATAGCCAGCATTACATAAGAGAGCTCCAACTT | + |
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Preference number: 5 (lower is better) Translates to: ADNPLLRLLTVASAL*ELRNSQHYIRELQL Trigger: AAGTTGGAGCTCTCTTATGTAATGCTGGCTATTCCGAAGTTCGCAAAGTGCTGAGGCCACGGTGAGCAGTCTTAACAGTGGATTGTCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000558036.5 ENST00000560383.5 ENST00000560433.5 |
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| CDS CCA 90 bp | CAACCTATTCACACTGGGAACTGCAAGCCAGAATCTTGGTGTAAGTaGGCTTTCCTGCTAGCGCCAGCTTCAGCGTCTAAGAACAACAAA | + |
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Preference number: 5 (lower is better) Translates to: QPIHTGNCKPESWCK*AFLLAPASASKNNK Trigger: TTTGTTGTTCTTAGACGCTGAAGCTGGCGCTAGCAGGAAAGCCCACTTACACCAAGATTCTGGCTTGCAGTTCCCAGTGTGAATAGGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560433.5 |
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| CDS CCA 90 bp | AGCCATGATTTGGAAAAGAAAACAATGGCAAAGCTGATGGGACTCTaGAGCAACCTATTCACACTGGGAACTGCAAGCCAGAATCTTGGT | + |
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Preference number: 5 (lower is better) Translates to: SHDLEKKTMAKLMGL*SNLFTLGTASQNLG Trigger: ACCAAGATTCTGGCTTGCAGTTCCCAGTGTGAATAGGTTGCTCCAGAGTCCCATCAGCTTTGCCATTGTTTTCTTTTCCAAATCATGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000560433.5 |
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| CDS CCA 72 bp | CACACTGGGAACTGCAAGCCAGAATCTTGGTGTAAGTaGGCTTTCCTGCTAGCGCCAGCTTCAGCGTCTAAG | + |
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Preference number: 6 (lower is better) Translates to: HTGNCKPESWCK*AFLLAPASASK Trigger: CTTAGACGCTGAAGCTGGCGCTAGCAGGAAAGCCCACTTACACCAAGATTCTGGCTTGCAGTTCCCAGTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560433.5 |
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| CDS GCA 72 bp | GATGGGACTCTGGAGCAACCTATTCACACTGGGAACTaGAAGCCAGAATCTTGGTGTAAGTGGGCTTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: DGTLEQPIHTGN*KPESWCKWAFL Trigger: CAGGAAAGCCCACTTACACCAAGATTCTGGCTTGCAGTTCCCAGTGTGAATAGGTTGCTCCAGAGTCCCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560433.5 |
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| CDS CCA 72 bp | CAACCTATTCACACTGGGAACTGCAAGCCAGAATCTTaGTGTAAGTGGGCTTTCCTGCTAGCGCCAGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: QPIHTGNCKPES*CKWAFLLAPAS Trigger: TGAAGCTGGCGCTAGCAGGAAAGCCCACTTACACCAAGATTCTGGCTTGCAGTTCCCAGTGTGAATAGGTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560433.5 |
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| CDS GCA 72 bp | CCACTGTTAAGACTGCTCACCGTGGCCTCAGCACTTTaGGAACTTCGGAATAGCCAGCATTACATAAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: PLLRLLTVASAL*ELRNSQHYIRE Trigger: CTCTCTTATGTAATGCTGGCTATTCCGAAGTTCGCAAAGTGCTGAGGCCACGGTGAGCAGTCTTAACAGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000558036.5 ENST00000560383.5 ENST00000560433.5 |
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| CDS TCA 72 bp | AAGACACAGTGGTCTTCTTTCTTTGGTAGAGCTCCCTaGAGAAAGTTCATTCTCCTAGCTCCAAGGAGGGGA | + |
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Preference number: 6 (lower is better) Translates to: KTQWSSFFGRAP*RKFILLAPRRG Trigger: TCCCCTCCTTGGAGCTAGGAGAATGAACTTTCTTCAGGGAGCTCTACCAAAGAAAGAAGACCACTGTGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558036.5 ENST00000560433.5 |
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| CDS CCA 72 bp | TGCTATGGCATTCTGGAGGACAGAGGGCAATGGAGATaGATGATTAACTTCAACCAAGTATCAGCTACCCAG | + |
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Preference number: 6 (lower is better) Translates to: CYGILEDRGQWR*MINFNQVSATQ Trigger: CTGGGTAGCTGATACTTGGTTGAAGTTAATCATCCATCTCCATTGCCCTCTGTCCTCCAGAATGCCATAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560307.5 |
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| CDS CAA 90 bp | AATTGCTTTCCTACAGGAATCTCAAAGTGGCTGCTGAGCCATGATTaGGAAAAGAAAACAATGGCAAAGCTGATGGGACTCTGGAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: NCFPTGISKWLLSHD*EKKTMAKLMGLWSN Trigger: GTTGCTCCAGAGTCCCATCAGCTTTGCCATTGTTTTCTTTTCCAAATCATGGCTCAGCAGCCACTTTGAGATTCCTGTAGGAAAGCAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000560433.5 |
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| CDS TCA 72 bp | ATGGCATTCTGGAGGACAGAGGGCAATGGAGATGGATaGTTAACTTCAACCAAGTATCAGCTACCCAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: MAFWRTEGNGDG*LTSTKYQLPRK Trigger: TTTTCTGGGTAGCTGATACTTGGTTGAAGTTAATCATCCATCTCCATTGCCCTCTGTCCTCCAGAATGCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560307.5 |
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| CDS GCA 72 bp | CCTAATAAAGGGAAAAATCATCCTAACACACGGAGCTaGACGAAAGTAGGTTACATTAAGTTCTCCGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: PNKGKNHPNTRS*TKVGYIKFSAG Trigger: CCCAGCGGAGAACTTAATGTAACCTACTTTCGTGCAGCTCCGTGTGTTAGGATGATTTTTCCCTTTATTAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000558036.5 ENST00000560433.5 |
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| CDS GCA 72 bp | GAGTTAATGGAAATAGGAATACCACATGCATTTAGATaGATTCCTCAGAAGACATGGAAGCGAACTCTCCTA | + |
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Preference number: 6 (lower is better) Translates to: ELMEIGIPHAFR*IPQKTWKRTLL Trigger: TAGGAGAGTTCGCTTCCATGTCTTCTGAGGAATGCATCTAAATGCATGTGGTATTCCTATTTCCATTAACTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000558036.5 ENST00000560433.5 |
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| CDS CCA 72 bp | GAGATAAGAAATTGCTTTCCTACAGGAATCTCAAAGTaGCTGCTGAGCCATGATTTGGAAAAGAAAACAATG | + |
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Preference number: 6 (lower is better) Translates to: EIRNCFPTGISK*LLSHDLEKKTM Trigger: CATTGTTTTCTTTTCCAAATCATGGCTCAGCAGCCACTTTGAGATTCCTGTAGGAAAGCAATTTCTTATCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000560433.5 |
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| CDS CAA 72 bp | TTTCTACCGATGAATACATGGGAGCTTCTTAAAATCTaGGCATTAACAGCTTCTGTCTCAATAGCAGGAGAT | + |
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Preference number: 6 (lower is better) Translates to: FLPMNTWELLKI*ALTASVSIAGD Trigger: ATCTCCTGCTATTGAGACAGAAGCTGTTAATGCCAAGATTTTAAGAAGCTCCCATGTATTCATCGGTAGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560433.5 |
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| CDS GCA 72 bp | AAGAAAAAGAAACATGTAGGTTTAACCAGTAGCACGTaGTACAACTTCTTCAGGAAACACTGCAACATTTAC | + |
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Preference number: 6 (lower is better) Translates to: KKKKHVGLTSST*YNFFRKHCNIY Trigger: GTAAATGTTGCAGTGTTTCCTGAAGAAGTTGTAGCACGTGCTACTGGTTAAACCTACATGTTTCTTTTTCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000561187.1 |
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| CDS TCA 72 bp | TTCAACCAGTGTAGTATCTTATCTTTGTTAACAAACTaGTACAAGAACTCTCTCCTTCAGAAACACCATCCA | + |
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Preference number: 6 (lower is better) Translates to: FNQCSILSLLTN*YKNSLLQKHHP Trigger: TGGATGGTGTTTCTGAAGGAGAGAGTTCTTGTATCAGTTTGTTAACAAAGATAAGATACTACACTGGTTGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000558036.5 ENST00000560433.5 |
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