Pregenerated sensors for SNRNP40 (Homo sapiens)
Ensembl gene IDs: ENSG00000060688Ensembl transcript IDs: ENST00000373720.3, ENST00000463988.1, ENST00000474025.1, ENST00000489853.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCCATGGACTCCAAGTTCTACACCCAAGATCATTCAGCATGTTCATaGCCCAATTTTAGCATATTAGCCATGCAGCCTGTTATGTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: PMDSKFYTQDHSACS*PNFSILAMQPVMLP Trigger: TGGCAACATAACAGGCTGCATGGCTAATATGCTAAAATTGGGGCATGAACATGCTGAATGATCTTGGGTGTAGAACTTGGAGTCCATGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000463988.1 |
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| CDS TCA 90 bp | TGTTCAGGGACAAGACAGAGATCTGAGACTACAGTCCTAGATTCTTaGCTATCTCACCTAAAGCTTTCCCCATTACAACACATTCTAATC | + |
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Preference number: 5 (lower is better) Translates to: CSGTRQRSETTVLDS*LSHLKLSPLQHILI Trigger: GATTAGAATGTGTTGTAATGGGGAAAGCTTTAGGTGAGATAGTCAAGAATCTAGGACTGTAGTCTCAGATCTCTGTCTTGTCCCTGAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000474025.1 |
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| CDS CCA 90 bp | ACTCACTTTCCAACTAGTAAAATAATGGCTTCTGTATTTACCCCATaGACTCCAAGTTCTACACCCAAGATCATTCAGCATGTTCATGCC | + |
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Preference number: 5 (lower is better) Translates to: THFPTSKIMASVFTP*TPSSTPKIIQHVHA Trigger: GGCATGAACATGCTGAATGATCTTGGGTGTAGAACTTGGAGTCCATGGGGTAAATACAGAAGCCATTATTTTACTAGTTGGAAAGTGAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000463988.1 |
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| CDS TCA 90 bp | AGCCCAAAGGACTTACATTTATTTTGCCTAACTTGGAACTTCCCTTaGAAACATTTAAAGGAAAGGACATTATTAGCCTCTGGTTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: SPKDLHLFCLTWNFP*KHLKERTLLASGSW Trigger: CCAGGAACCAGAGGCTAATAATGTCCTTTCCTTTAAATGTTTTCAAGGGAAGTTCCAAGTTAGGCAAAATAAATGTAAGTCCTTTGGGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000489853.1 |
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| CDS GCA 72 bp | CTTTGTAGTGTTTTAACTTGTGCTGGCTCTGTCTCCTaGTCAGCAACAGCTTTGAAGATAACCCATATTCCC | + |
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Preference number: 6 (lower is better) Translates to: LCSVLTCAGSVS*SATALKITHIP Trigger: GGGAATATGGGTTATCTTCAAAGCTGTTGCTGAGCAGGAGACAGAGCCAGCACAAGTTAAAACACTACAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000489853.1 |
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| CDS CAA 72 bp | CTGAGGGGGCAGGAAGGAAAAATGTCACACACAATGTaGGTAATTTGCAACAGAATGCAGTTGGGTGTGATA | + |
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Preference number: 6 (lower is better) Translates to: LRGQEGKMSHTM*VICNRMQLGVI Trigger: TATCACACCCAACTGCATTCTGTTGCAAATTACCAACATTGTGTGTGACATTTTTCCTTCCTGCCCCCTCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000373720.3 |
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| CDS GCA 72 bp | TCCAAGTTCTACACCCAAGATCATTCAGCATGTTCATaGCCCAATTTTAGCATATTAGCCATGCAGCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: SKFYTQDHSACS*PNFSILAMQPV Trigger: AACAGGCTGCATGGCTAATATGCTAAAATTGGGGCATGAACATGCTGAATGATCTTGGGTGTAGAACTTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000463988.1 |
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| CDS TCA 72 bp | ACAAGACAGAGATCTGAGACTACAGTCCTAGATTCTTaGCTATCTCACCTAAAGCTTTCCCCATTACAACAC | + |
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Preference number: 6 (lower is better) Translates to: TRQRSETTVLDS*LSHLKLSPLQH Trigger: GTGTTGTAATGGGGAAAGCTTTAGGTGAGATAGTCAAGAATCTAGGACTGTAGTCTCAGATCTCTGTCTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000474025.1 |
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| CDS CAA 72 bp | TCTGATGGAATCTGTGAGCAATCTTTGACTTTTTCCTaGGATCCTGGGAGAGATTTCCTTTCCAAAGTTACC | + |
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Preference number: 6 (lower is better) Translates to: SDGICEQSLTFS*DPGRDFLSKVT Trigger: GGTAACTTTGGAAAGGAAATCTCTCCCAGGATCCAAGGAAAAAGTCAAAGATTGCTCACAGATTCCATCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000474025.1 |
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| CDS CAA 90 bp | TCTGGTGGCTCTCTGAAGGATGAGCCCAAAGGACTTACATTTATTTaGCCTAACTTGGAACTTCCCTTGAAAACATTTAAAGGAAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: SGGSLKDEPKGLTFI*PNLELPLKTFKGKD Trigger: GTCCTTTCCTTTAAATGTTTTCAAGGGAAGTTCCAAGTTAGGCAAAATAAATGTAAGTCCTTTGGGCTCATCCTTCAGAGAGCCACCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000489853.1 |
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| CDS CCA 72 bp | CCAACTAGTAAAATAATGGCTTCTGTATTTACCCCATaGACTCCAAGTTCTACACCCAAGATCATTCAGCAT | + |
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Preference number: 6 (lower is better) Translates to: PTSKIMASVFTP*TPSSTPKIIQH Trigger: ATGCTGAATGATCTTGGGTGTAGAACTTGGAGTCCATGGGGTAAATACAGAAGCCATTATTTTACTAGTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000463988.1 |
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| CDS CAA 90 bp | GAGCCCAAAGGACTTACATTTATTTTGCCTAACTTGGAACTTCCCTaGAAAACATTTAAAGGAAAGGACATTATTAGCCTCTGGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: EPKGLTFILPNLELP*KTFKGKDIISLWFL Trigger: CAGGAACCAGAGGCTAATAATGTCCTTTCCTTTAAATGTTTTCAAGGGAAGTTCCAAGTTAGGCAAAATAAATGTAAGTCCTTTGGGCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000489853.1 |
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| CDS CCA 72 bp | GTACGAGGACTTTGTGGACATGAACACATCTATAATTaGGATCCTATATCACTAACTCCTGGATATCCTAAT | + |
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Preference number: 6 (lower is better) Translates to: VRGLCGHEHIYN*DPISLTPGYPN Trigger: ATTAGGATATCCAGGAGTTAGTGATATAGGATCCCAATTATAGATGTGTTCATGTCCACAAAGTCCTCGTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000489853.1 |
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| CDS CAA 72 bp | GCAGGAAGGAAAAATGTCACACACAATGTTGGTAATTaGCAACAGAATGCAGTTGGGTGTGATACTAATTTC | + |
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Preference number: 6 (lower is better) Translates to: AGRKNVTHNVGN*QQNAVGCDTNF Trigger: GAAATTAGTATCACACCCAACTGCATTCTGTTGCAAATTACCAACATTGTGTGTGACATTTTTCCTTCCTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373720.3 |
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| CDS GCA 72 bp | CAGGAAGGAAAAATGTCACACACAATGTTGGTAATTTaGAACAGAATGCAGTTGGGTGTGATACTAATTTCA | + |
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Preference number: 6 (lower is better) Translates to: QEGKMSHTMLVI*NRMQLGVILIS Trigger: TGAAATTAGTATCACACCCAACTGCATTCTGTTGCAAATTACCAACATTGTGTGTGACATTTTTCCTTCCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373720.3 |
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| CDS CAA 72 bp | GATGAGCCCAAAGGACTTACATTTATTTTGCCTAACTaGGAACTTCCCTTGAAAACATTTAAAGGAAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: DEPKGLTFILPN*ELPLKTFKGKD Trigger: GTCCTTTCCTTTAAATGTTTTCAAGGGAAGTTCCAAGTTAGGCAAAATAAATGTAAGTCCTTTGGGCTCATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000489853.1 |
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| CDS CAA 90 bp | TCTCTGAAGGATGAGCCCAAAGGACTTACATTTATTTTGCCTAACTaGGAACTTCCCTTGAAAACATTTAAAGGAAAGGACATTATTAGC | + |
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Preference number: 6 (lower is better) Translates to: SLKDEPKGLTFILPN*ELPLKTFKGKDIIS Trigger: GCTAATAATGTCCTTTCCTTTAAATGTTTTCAAGGGAAGTTCCAAGTTAGGCAAAATAAATGTAAGTCCTTTGGGCTCATCCTTCAGAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000489853.1 |
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| CDS GCA 72 bp | ATACTAATTTCAAAAAGATATTTTGCAAGATTTCTCTaGCAGCTTAGTCACATCCAGCAAAGCTTCAATGTG | + |
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Preference number: 6 (lower is better) Translates to: ILISKRYFARFL*QLSHIQQSFNV Trigger: CACATTGAAGCTTTGCTGGATGTGACTAAGCTGGCAGAGAAATCTTGCAAAATATCTTTTTGAAATTAGTAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373720.3 |
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