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Pregenerated sensors for SNRNP27 (Homo sapiens)

Ensembl gene IDs: ENSG00000124380

Ensembl transcript IDs: ENST00000244227.8, ENST00000409116.5

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp GGGTTAAAGAAAGAACTGCATACATATTCTGATCTCATAGGTGGGATCAACCCACGGGAGCGTCTTCGGTaGGGGGATCGCGAGCGGCTC +
Preference number: 4 (lower is better)
Translates to: GLKKELHTYSDLIGGINPRERLR*GDRERL
Trigger: GAGCCGCTCGCGATCCCCGCACCGAAGACGCTCCCG...TGGGTTGATCCCACCTATGAGATCAGAATATGTATGCAGTTCTTTCTTTAACCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR CCA 90 bp GGGTTAAAGAAAGAACTGCATACATATTCTGATCTCATAGGTGGGATCAACCCACGACTGCGACCCATTTaGAGTCCCGCTTCCCGGAAA +
Preference number: 4 (lower is better)
Translates to: GLKKELHTYSDLIGGINPRLRPI*SPASRK
Trigger: TTTCCGGGAAGCGGGACTCCAAATGGGTCGCAGTCG...TGGGTTGATCCCACCTATGAGATCAGAATATGTATGCAGTTCTTTCTTTAACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR CCA 90 bp TGGCAAGTCATGGGAGGCAAGCCAATGTTTACCAATAAAACATTAGTTAATAAACGACTGCGACCCATTTaGAGTCCCGCTTCCCGGAAA +
Preference number: 4 (lower is better)
Translates to: WQVMGGKPMFTNKTLVNKRLRPI*SPASRK
Trigger: TTTCCGGGAAGCGGGACTCCAAATGGGTCGCAGTCG...TTTATTAACTAATGTTTTATTGGTAAACATTGGCTTGCCTCCCATGACTTGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR CCA 90 bp TGGCAAGTCATGGGAGGCAAGCCAATGTTTACCAATAAAACATTAGTTAATAAAGGATCTATGTCGTCTTaGAGATCGGGAGCGTCTTCG +
Preference number: 4 (lower is better)
Translates to: WQVMGGKPMFTNKTLVNKGSMSS*RSGASS
Trigger: CGAAGACGCTCCCGATCTCCAAGACGACATAGATCC...TTTATTAACTAATGTTTTATTGGTAAACATTGGCTTGCCTCCCATGACTTGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR GCA 90 bp GGGTTAAAGAAAGAACTGCATACATATTCTGATCTCATAGGTGGGATCAACCCATCTTCCTCAGTAATCTaGCGTTCTTTGCTCTTTGTT +
Preference number: 4 (lower is better)
Translates to: GLKKELHTYSDLIGGINPSSSVI*RSLLFV
Trigger: AACAAAGAGCAAAGAACGGCAGATTACTGAGGAAGA...TGGGTTGATCCCACCTATGAGATCAGAATATGTATGCAGTTCTTTCTTTAACCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR GCA 90 bp TGGCAAGTCATGGGAGGCAAGCCAATGTTTACCAATAAAACATTAGTTAATAAATCTTCCTCAGTAATCTaGCGTTCTTTGCTCTTTGTT +
Preference number: 4 (lower is better)
Translates to: WQVMGGKPMFTNKTLVNKSSSVI*RSLLFV
Trigger: AACAAAGAGCAAAGAACGGCAGATTACTGAGGAAGA...TTTATTAACTAATGTTTTATTGGTAAACATTGGCTTGCCTCCCATGACTTGCCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR CCA 90 bp TGGCAAGTCATGGGAGGCAAGCCAATGTTTACCAATAAAACATTAGTTAATAAATATAATGGCAAGTCATaGGAGGCAAGCCAATGTTTA +
Preference number: 4 (lower is better)
Translates to: WQVMGGKPMFTNKTLVNKYNGKS*EASQCL
Trigger: TAAACATTGGCTTGCCTCCCATGACTTGCCATTATA...TTTATTAACTAATGTTTTATTGGTAAACATTGGCTTGCCTCCCATGACTTGCCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR CAA 90 bp GGGTTAAAGAAAGAACTGCATACATATTCTGATCTCATAGGTGGGATCAACCCAGCGACTGCGACCCATTaGGAGTCCCGCTTCCCGGAA +
Preference number: 5 (lower is better)
Translates to: GLKKELHTYSDLIGGINPATATH*ESRFPE
Trigger: TTCCGGGAAGCGGGACTCCAAATGGGTCGCAGTCGC...TGGGTTGATCCCACCTATGAGATCAGAATATGTATGCAGTTCTTTCTTTAACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR CAA 90 bp GGGTTAAAGAAAGAACTGCATACATATTCTGATCTCATAGGTGGGATCAACCCATGGATCTATGTCGTCTaGGAGATCGGGAGCGTCTTC +
Preference number: 5 (lower is better)
Translates to: GLKKELHTYSDLIGGINPWIYVV*EIGSVF
Trigger: GAAGACGCTCCCGATCTCCAAGACGACATAGATCCA...TGGGTTGATCCCACCTATGAGATCAGAATATGTATGCAGTTCTTTCTTTAACCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR CAA 90 bp TGGCAAGTCATGGGAGGCAAGCCAATGTTTACCAATAAAACATTAGTTAATAAATGGATCTATGTCGTCTaGGAGATCGGGAGCGTCTTC +
Preference number: 5 (lower is better)
Translates to: WQVMGGKPMFTNKTLVNKWIYVV*EIGSVF
Trigger: GAAGACGCTCCCGATCTCCAAGACGACATAGATCCA...TTTATTAACTAATGTTTTATTGGTAAACATTGGCTTGCCTCCCATGACTTGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR CAA 90 bp GGGTTAAAGAAAGAACTGCATACATATTCTGATCTCATAGGTGGGATCAACCCAATTCATGTACTGCTTTaGTGGAGTCAAAGGAGGCAA +
Preference number: 5 (lower is better)
Translates to: GLKKELHTYSDLIGGINPIHVLL*WSQRRQ
Trigger: TTGCCTCCTTTGACTCCACAAAAGCAGTACATGAAT...TGGGTTGATCCCACCTATGAGATCAGAATATGTATGCAGTTCTTTCTTTAACCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000409116.5
CDS-3UTR CAA 90 bp GGGTTAAAGAAAGAACTGCATACATATTCTGATCTCATAGGTGGGATCAACCCAGTAATCTGCCGTTCTTaGCTCTTTGTTTCTTTTGTT +
Preference number: 5 (lower is better)
Translates to: GLKKELHTYSDLIGGINPVICRS*LFVSFV
Trigger: AACAAAAGAAACAAAGAGCAAAGAACGGCAGATTAC...TGGGTTGATCCCACCTATGAGATCAGAATATGTATGCAGTTCTTTCTTTAACCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5
CDS-3UTR CAA 90 bp TGGCAAGTCATGGGAGGCAAGCCAATGTTTACCAATAAAACATTAGTTAATAAAGTAATCTGCCGTTCTTaGCTCTTTGTTTCTTTTGTT +
Preference number: 5 (lower is better)
Translates to: WQVMGGKPMFTNKTLVNKVICRS*LFVSFV
Trigger: AACAAAAGAAACAAAGAGCAAAGAACGGCAGATTAC...TTTATTAACTAATGTTTTATTGGTAAACATTGGCTTGCCTCCCATGACTTGCCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000244227.8
ENST00000409116.5