Pregenerated sensors for SNORD17 (Homo sapiens)
Ensembl gene IDs: ENSG00000212232Ensembl transcript IDs: ENST00000390930.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS TCA 90 bp | ACCACTCATCTTTGTGAGATGGGTCTCAGAGGGCCCCGTCCCTGCTaGCACCAACCATTCTTACCGGTAGCCTGCCAACACACAAGCAGT | + |
Preference number: 5 (lower is better) Translates to: TTHLCEMGLRGPRPC*HQPFLPVACQHTSS Trigger: ACTGCTTGTGTGTTGGCAGGCTACCGGTAAGAATGGTTGGTGTCAGCAGGGACGGGGCCCTCTGAGACCCATCTCACAAAGATGAGTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390930.1 |
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CDS GCA 90 bp | CTTACCGGTAGCCTGCCAACACACAAGCAGTTCACAGTAGAACACTaGAGACTGCAGGGCATTTTCAGGCTACATAGCCTCAAGTTCCTA | + |
Preference number: 5 (lower is better) Translates to: LTGSLPTHKQFTVEH*RLQGIFRLHSLKFL Trigger: TAGGAACTTGAGGCTATGTAGCCTGAAAATGCCCTGCAGTCTGCAGTGTTCTACTGTGAACTGCTTGTGTGTTGGCAGGCTACCGGTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390930.1 |
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CDS TCA 72 bp | CTTTGTGAGATGGGTCTCAGAGGGCCCCGTCCCTGCTaGCACCAACCATTCTTACCGGTAGCCTGCCAACAC | + |
Preference number: 6 (lower is better) Translates to: LCEMGLRGPRPC*HQPFLPVACQH Trigger: GTGTTGGCAGGCTACCGGTAAGAATGGTTGGTGTCAGCAGGGACGGGGCCCTCTGAGACCCATCTCACAAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390930.1 |
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CDS GCA 72 bp | AGCCTGCCAACACACAAGCAGTTCACAGTAGAACACTaGAGACTGCAGGGCATTTTCAGGCTACATAGCCTC | + |
Preference number: 6 (lower is better) Translates to: SLPTHKQFTVEH*RLQGIFRLHSL Trigger: GAGGCTATGTAGCCTGAAAATGCCCTGCAGTCTGCAGTGTTCTACTGTGAACTGCTTGTGTGTTGGCAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390930.1 |