Pregenerated sensors for SNHG8 (Homo sapiens)
Ensembl gene IDs: ENSG00000269893Ensembl transcript IDs: ENST00000602414.6, ENST00000602483.5, ENST00000602520.5, ENST00000602573.1, ENST00000602819.6, ENST00000652022.1, ENST00000654083.1, ENST00000665363.1, ENST00000667980.1
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCGAGGGCCCACGGCCCACGCACGCCGGGGTTCAGGGTCCAGGGCTaGACGTGGACGCCCGGCGACCTAATGAGCACTCAAGTCCGCGCA | + |
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Preference number: 5 (lower is better) Translates to: PRAHGPRTPGFRVQG*TWTPGDLMSTQVRA Trigger: TGCGCGGACTTGAGTGCTCATTAGGTCGCCGGGCGTCCACGTGCAGCCCTGGACCCTGAACCCCGGCGTGCGTGGGCCGTGGGCCCTCGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000652022.1 ENST00000654083.1 ENST00000665363.1 ENST00000667980.1 |
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| CDS CCA 90 bp | GCCCACGGCCCACGCACGCCGGGGTTCAGGGTCCAGGGCTGCACGTaGACGCCCGGCGACCTAATGAGCACTCAAGTCCGCGCATGCTTG | + |
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Preference number: 5 (lower is better) Translates to: AHGPRTPGFRVQGCT*TPGDLMSTQVRACL Trigger: CAAGCATGCGCGGACTTGAGTGCTCATTAGGTCGCCGGGCGTCCACGTGCAGCCCTGGACCCTGAACCCCGGCGTGCGTGGGCCGTGGGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000652022.1 ENST00000654083.1 ENST00000665363.1 ENST00000667980.1 |
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| CDS GCA 90 bp | CCGAGGGCCCACGGCCCACGCACGCCGGGGTTCAGGGTCCAGGGCTaGACGTGGACGCCCGGCGACCTAATGAGCATTTCACCTAATCCC | + |
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Preference number: 5 (lower is better) Translates to: PRAHGPRTPGFRVQG*TWTPGDLMSISPNP Trigger: GGGATTAGGTGAAATGCTCATTAGGTCGCCGGGCGTCCACGTGCAGCCCTGGACCCTGAACCCCGGCGTGCGTGGGCCGTGGGCCCTCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602414.6 |
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| CDS CCA 90 bp | GCCCACGGCCCACGCACGCCGGGGTTCAGGGTCCAGGGCTGCACGTaGACGCCCGGCGACCTAATGAGCATTTCACCTAATCCCGACGCT | + |
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Preference number: 5 (lower is better) Translates to: AHGPRTPGFRVQGCT*TPGDLMSISPNPDA Trigger: AGCGTCGGGATTAGGTGAAATGCTCATTAGGTCGCCGGGCGTCCACGTGCAGCCCTGGACCCTGAACCCCGGCGTGCGTGGGCCGTGGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602414.6 |
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| CDS CCA 90 bp | GGAGACAGCGGAGGACCACTCATGTGTGAACGGCCCGGAGAGAGCTaGGTGGTGTATGGGGTGACCTCCTGGGGGTATGGCTGTGGAGTC | + |
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Preference number: 5 (lower is better) Translates to: GDSGGPLMCERPGES*VVYGVTSWGYGCGV Trigger: GACTCCACAGCCATACCCCCAGGAGGTCACCCCATACACCACCCAGCTCTCTCCGGGCCGTTCACACATGAGTGGTCCTCCGCTGTCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 90 bp | GGTGCTAGGGCACAAGAGCGACAGAGTAGACTCAAGATGGCCACATaGCACAGACGGCTGAACAGGCTTCACCGGAGTCCCCGAGTGCAC | + |
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Preference number: 5 (lower is better) Translates to: GARAQERQSRLKMAT*HRRLNRLHRSPRVH Trigger: GTGCACTCGGGGACTCCGGTGAAGCCTGTTCAGCCGTCTGTGTCATGTGGCCATCTTGAGTCTACTCTGTCGCTCTTGTGCCCTAGCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000602414.6 ENST00000602819.6 ENST00000652022.1 ENST00000654083.1 ENST00000665363.1 ENST00000667980.1 |
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| CDS CCA 90 bp | TGTGAACGGCCCGGAGAGAGCTGGGTGGTGTATGGGGTGACCTCCTaGGGGTATGGCTGTGGAGTCAAGGATTCTCCTGGTGTTTATACC | + |
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Preference number: 5 (lower is better) Translates to: CERPGESWVVYGVTS*GYGCGVKDSPGVYT Trigger: GGTATAAACACCAGGAGAATCCTTGACTCCACAGCCATACCCCCAGGAGGTCACCCCATACACCACCCAGCTCTCTCCGGGCCGTTCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CCA 90 bp | GCCCGGAGAGAGCTGGGTGGTGTATGGGGTGACCTCCTGGGGGTATaGCTGTGGAGTCAAGGATTCTCCTGGTGTTTATACCAAAGTCTC | + |
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Preference number: 5 (lower is better) Translates to: ARRELGGVWGDLLGV*LWSQGFSWCLYQSL Trigger: GAGACTTTGGTATAAACACCAGGAGAATCCTTGACTCCACAGCCATACCCCCAGGAGGTCACCCCATACACCACCCAGCTCTCTCCGGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CCA 90 bp | AGAGAGCTGGGTGGTGTATGGGGTGACCTCCTGGGGGTATGGCTGTaGAGTCAAGGATTCTCCTGGTGTTTATACCAAAGTCTCAGCCTT | + |
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Preference number: 5 (lower is better) Translates to: RELGGVWGDLLGVWL*SQGFSWCLYQSLSL Trigger: AAGGCTGAGACTTTGGTATAAACACCAGGAGAATCCTTGACTCCACAGCCATACCCCCAGGAGGTCACCCCATACACCACCCAGCTCTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 90 bp | TGTTCAGCTCAGCTTCTTTCACCTAATCCCGACGCTTCCCGAATGTaGAAGGCCGAGGCCTTCGGCACACGCTCTCTTATAGAACTGATG | + |
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Preference number: 5 (lower is better) Translates to: CSAQLLSPNPDASRM*KAEAFGTRSLIELM Trigger: CATCAGTTCTATAAGAGAGCGTGTGCCGAAGGCCTCGGCCTTTCACATTCGGGAAGCGTCGGGATTAGGTGAAAGAAGCTGAGCTGAACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000602520.5 |
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| CDS TCA 90 bp | AAAGACAACTACGTACTTTCACCTAATCCCGACGCTTCCCGAATGTaGAAGGCCGAGGCCTTCGGCACACGCTCTCTTATAGAACTGATG | + |
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Preference number: 5 (lower is better) Translates to: KDNYVLSPNPDASRM*KAEAFGTRSLIELM Trigger: CATCAGTTCTATAAGAGAGCGTGTGCCGAAGGCCTCGGCCTTTCACATTCGGGAAGCGTCGGGATTAGGTGAAAGTACGTAGTTGTCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654083.1 ENST00000667980.1 |
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| CDS CCA 90 bp | AGAATTAACCAGCAACCAAACTGCTACAGGTTATTACTCACCATCTaGCTCAAACTGACGGTTCTCGGGGTGCTAGGGCACAAGAGCGAC | + |
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Preference number: 5 (lower is better) Translates to: RINQQPNCYRLLLTI*LKLTVLGVLGHKSD Trigger: GTCGCTCTTGTGCCCTAGCACCCCGAGAACCGTCAGTTTGAGCCAGATGGTGAGTAATAACCTGTAGCAGTTTGGTTGCTGGTTAATTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000602573.1 ENST00000665363.1 ENST00000667980.1 |
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| CDS TCA 90 bp | CGGAACACCCGTTTCCCCAACTACGATAAGTCCATTGCCGGATGCTaGATAAACTTCGCCCATTACCACTTGGATTTCTTGATAGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: RNTRFPNYDKSIAGC*INFAHYHLDFLIVC Trigger: GCAGACTATCAAGAAATCCAAGTGGTAATGGGCGAAGTTTATTCAGCATCCGGCAATGGACTTATCGTAGTTGGGGAAACGGGTGTTCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652022.1 ENST00000667980.1 |
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| CDS CCA 90 bp | TGTGCCAGATTCAGCAGCCATGTTTTGCCAGCCTGTTTACCACTCTaGAGAGAGAGGCCACAGAAAACAGCATCCAACTGTTACATAACA | + |
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Preference number: 5 (lower is better) Translates to: CARFSSHVLPACLPL*RERPQKTASNCYIT Trigger: TGTTATGTAACAGTTGGATGCTGTTTTCTGTGGCCTCTCTCTCCAGAGTGGTAAACAGGCTGGCAAAACATGGCTGCTGAATCTGGCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CCA 90 bp | CATGGAGCTCTAGTCTTCTGTGAAAAAGAGGAAGTAACTAGGAGATaGGTTGTGTCATGCATTCTAGGTCAGAGGTTCTCAACTGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: HGALVFCEKEEVTRR*VVSCILGQRFSTGG Trigger: GCCCCCAGTTGAGAACCTCTGACCTAGAATGCATGACACAACCCATCTCCTAGTTACTTCCTCTTTTTCACAGAAGACTAGAGCTCCATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 90 bp | CGGAACACCCGTTTCCCCAACTACGATAAGTCCATTGCCGGATGCTaGATAAACTTCGCCCATTACCACTTGGATTTCTTGATAGTCTTA | + |
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Preference number: 5 (lower is better) Translates to: RNTRFPNYDKSIAGC*INFAHYHLDFLIVL Trigger: TAAGACTATCAAGAAATCCAAGTGGTAATGGGCGAAGTTTATTCAGCATCCGGCAATGGACTTATCGTAGTTGGGGAAACGGGTGTTCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000602414.6 ENST00000602483.5 ENST00000602520.5 ENST00000602573.1 ENST00000602819.6 ENST00000654083.1 ENST00000665363.1 |
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| CDS GCA 90 bp | AAAGGTTTTGTGAAGAACGTTATAAGGGTCGGTTTACAGGGAGAATaGTTTGTGCTGGAAACCTCCATGAACACAAACGCGTGGACAGCT | + |
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Preference number: 5 (lower is better) Translates to: KGFVKNVIRVGLQGE*FVLETSMNTNAWTA Trigger: AGCTGTCCACGCGTTTGTGTTCATGGAGGTTTCCAGCACAAAGCATTCTCCCTGTAAACCGACCCTTATAACGTTCTTCACAAAACCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 90 bp | ATGTTGCGATGGTTATCTGGAATGCCACTAATCAGATGTTTGGTCTaGGTAGGACGAGCCTATTCAAGAACACTACAACAAGCAGCCATT | + |
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Preference number: 5 (lower is better) Translates to: MLRWLSGMPLIRCLV*VGRAYSRTLQQAAI Trigger: AATGGCTGCTTGTTGTAGTGTTCTTGAATAGGCTCGTCCTACTCAGACCAAACATCTGATTAGTGGCATTCCAGATAACCATCGCAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CCA 90 bp | ACAGCACTAGGAGCTATGCTGTTAGGGTTGGAGATTATCATACTCTaGTACCAGAGGAGTTTGAGGAAGAAATTGGAGTTCAACAGATTG | + |
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Preference number: 5 (lower is better) Translates to: TALGAMLLGLEIIIL*YQRSLRKKLEFNRL Trigger: CAATCTGTTGAACTCCAATTTCTTCCTCAAACTCCTCTGGTACCAGAGTATGATAATCTCCAACCCTAACAGCATAGCTCCTAGTGCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 90 bp | AGTAAAGCCTCAAGGACATCTGCCTGTCACAATATATTCTCAAAGTaGTCTGATATTTGGAAACAAGTATCCTTGTTGAGTACCAAGTGC | + |
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Preference number: 5 (lower is better) Translates to: SKASRTSACHNIFSK*SDIWKQVSLLSTKC Trigger: GCACTTGGTACTCAACAAGGATACTTGTTTCCAAATATCAGATCACTTTGAGAATATATTGTGACAGGCAGATGTCCTTGAGGCTTTACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 90 bp | CCCTGCTTTAGGTGGGTTTGGTATCAGAATCATCATACTTTAGTATaGTGGCTGAAAAATGGGCTGAGAACTATCCATCTGGTAAATATT | + |
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Preference number: 5 (lower is better) Translates to: PCFRWVWYQNHHTLV*WLKNGLRTIHLVNI Trigger: AATATTTACCAGATGGATAGTTCTCAGCCCATTTTTCAGCCATCATACTAAAGTATGATGATTCTGATACCAAACCCACCTAAAGCAGGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 90 bp | GGTGGCTATATAAGCCAAATCATCTTTATTGCACTGTTTAGTTTTTaGGCGCTGACAGTTAATCATATATACGAGATGGTCAGAGCCCTA | + |
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Preference number: 5 (lower is better) Translates to: GGYISQIIFIALFSF*ALTVNHIYEMVRAL Trigger: TAGGGCTCTGACCATCTCGTATATATGATTAACTGTCAGCGCTCAAAAACTAAACAGTGCAATAAAGATGATTTGGCTTATATAGCCACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS GCA 90 bp | GAGGTTAGCATGAACTTACAAATTGTTTTAAGTAATCCTCTTGAATaGCAGTCATTAAAGGACTTTGCCCTTCTACATCAAATTACATCC | + |
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Preference number: 5 (lower is better) Translates to: EVSMNLQIVLSNPLE*QSLKDFALLHQITS Trigger: GGATGTAATTTGATGTAGAAGGGCAAAGTCCTTTAATGACTGGCATTCAAGAGGATTACTTAAAACAATTTGTAAGTTCATGCTAACCTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS GCA 72 bp | CACGGCCCACGCACGCCGGGGTTCAGGGTCCAGGGCTaGACGTGGACGCCCGGCGACTTTCACCTAATCCCG | + |
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Preference number: 6 (lower is better) Translates to: HGPRTPGFRVQG*TWTPGDFHLIP Trigger: CGGGATTAGGTGAAAGTCGCCGGGCGTCCACGTGCAGCCCTGGACCCTGAACCCCGGCGTGCGTGGGCCGTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602819.6 |
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| CDS GCA 72 bp | CACGGCCCACGCACGCCGGGGTTCAGGGTCCAGGGCTaGACGTGGACGCCCGGCGACCTAATGAGCACTCAA | + |
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Preference number: 6 (lower is better) Translates to: HGPRTPGFRVQG*TWTPGDLMSTQ Trigger: TTGAGTGCTCATTAGGTCGCCGGGCGTCCACGTGCAGCCCTGGACCCTGAACCCCGGCGTGCGTGGGCCGTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000652022.1 ENST00000654083.1 ENST00000665363.1 ENST00000667980.1 |
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| CDS CCA 72 bp | CCACGCACGCCGGGGTTCAGGGTCCAGGGCTGCACGTaGACGCCCGGCGACCTAATGAGCACTCAAGTCCGC | + |
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Preference number: 6 (lower is better) Translates to: PRTPGFRVQGCT*TPGDLMSTQVR Trigger: GCGGACTTGAGTGCTCATTAGGTCGCCGGGCGTCCACGTGCAGCCCTGGACCCTGAACCCCGGCGTGCGTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000652022.1 ENST00000654083.1 ENST00000665363.1 ENST00000667980.1 |
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| CDS GCA 72 bp | CACGGCCCACGCACGCCGGGGTTCAGGGTCCAGGGCTaGACGTGGACGCCCGGCGACCTAATGAGCATTTCA | + |
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Preference number: 6 (lower is better) Translates to: HGPRTPGFRVQG*TWTPGDLMSIS Trigger: TGAAATGCTCATTAGGTCGCCGGGCGTCCACGTGCAGCCCTGGACCCTGAACCCCGGCGTGCGTGGGCCGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602414.6 |
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| CDS CCA 72 bp | CCACGCACGCCGGGGTTCAGGGTCCAGGGCTGCACGTaGACGCCCGGCGACTTTCACCTAATCCCGACGCTT | + |
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Preference number: 6 (lower is better) Translates to: PRTPGFRVQGCT*TPGDFHLIPTL Trigger: AAGCGTCGGGATTAGGTGAAAGTCGCCGGGCGTCCACGTGCAGCCCTGGACCCTGAACCCCGGCGTGCGTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602819.6 |
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| CDS CCA 72 bp | CCACGCACGCCGGGGTTCAGGGTCCAGGGCTGCACGTaGACGCCCGGCGACCTAATGAGCATTTCACCTAAT | + |
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Preference number: 6 (lower is better) Translates to: PRTPGFRVQGCT*TPGDLMSISPN Trigger: ATTAGGTGAAATGCTCATTAGGTCGCCGGGCGTCCACGTGCAGCCCTGGACCCTGAACCCCGGCGTGCGTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602414.6 |
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| CDS CCA 72 bp | CCCGGAGAGAGCTGGGTGGTGTATGGGGTGACCTCCTaGGGGTATGGCTGTGGAGTCAAGGATTCTCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: PGESWVVYGVTS*GYGCGVKDSPG Trigger: ACCAGGAGAATCCTTGACTCCACAGCCATACCCCCAGGAGGTCACCCCATACACCACCCAGCTCTCTCCGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 72 bp | AGAGTAGACTCAAGATGGCCACATGACACAGACGGCTaGACAGGCTTCACCGGAGTCCCCGAGTGCACGGAA | + |
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Preference number: 6 (lower is better) Translates to: RVDSRWPHDTDG*TGFTGVPECTE Trigger: TTCCGTGCACTCGGGGACTCCGGTGAAGCCTGTTCAGCCGTCTGTGTCATGTGGCCATCTTGAGTCTACTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000602414.6 ENST00000602819.6 ENST00000652022.1 ENST00000654083.1 ENST00000665363.1 ENST00000667980.1 |
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| CDS TCA 72 bp | GCACAAGAGCGACAGAGTAGACTCAAGATGGCCACATaGCACAGACGGCTGAACAGGCTTCACCGGAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: AQERQSRLKMAT*HRRLNRLHRSP Trigger: GGGACTCCGGTGAAGCCTGTTCAGCCGTCTGTGTCATGTGGCCATCTTGAGTCTACTCTGTCGCTCTTGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000602414.6 ENST00000602819.6 ENST00000652022.1 ENST00000654083.1 ENST00000665363.1 ENST00000667980.1 |
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| CDS CCA 72 bp | TGCTTTGTGCTGGAAACCTCCATGAACACAAACGCGTaGACAGCTGCCAGGGAGACAGCGGAGGACCACTCA | + |
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Preference number: 6 (lower is better) Translates to: CFVLETSMNTNA*TAARETAEDHS Trigger: TGAGTGGTCCTCCGCTGTCTCCCTGGCAGCTGTCCACGCGTTTGTGTTCATGGAGGTTTCCAGCACAAAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CCA 72 bp | GAGCTGGGTGGTGTATGGGGTGACCTCCTGGGGGTATaGCTGTGGAGTCAAGGATTCTCCTGGTGTTTATAC | + |
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Preference number: 6 (lower is better) Translates to: ELGGVWGDLLGV*LWSQGFSWCLY Trigger: GTATAAACACCAGGAGAATCCTTGACTCCACAGCCATACCCCCAGGAGGTCACCCCATACACCACCCAGCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 72 bp | CAGCTTCTTTCACCTAATCCCGACGCTTCCCGAATGTaGAAGGCCGAGGCCTTCGGCACACGCTCTCTTATA | + |
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Preference number: 6 (lower is better) Translates to: QLLSPNPDASRM*KAEAFGTRSLI Trigger: TATAAGAGAGCGTGTGCCGAAGGCCTCGGCCTTTCACATTCGGGAAGCGTCGGGATTAGGTGAAAGAAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000602520.5 |
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| CDS TCA 72 bp | TACGTACTTTCACCTAATCCCGACGCTTCCCGAATGTaGAAGGCCGAGGCCTTCGGCACACGCTCTCTTATA | + |
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Preference number: 6 (lower is better) Translates to: YVLSPNPDASRM*KAEAFGTRSLI Trigger: TATAAGAGAGCGTGTGCCGAAGGCCTCGGCCTTTCACATTCGGGAAGCGTCGGGATTAGGTGAAAGTACGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654083.1 ENST00000667980.1 |
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| CDS TCA 72 bp | GTTTACAGGGAGAATGCTTTGTGCTGGAAACCTCCATaGACACAAACGCGTGGACAGCTGCCAGGGAGACAG | + |
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Preference number: 6 (lower is better) Translates to: VYRENALCWKPP*TQTRGQLPGRQ Trigger: CTGTCTCCCTGGCAGCTGTCCACGCGTTTGTGTTCATGGAGGTTTCCAGCACAAAGCATTCTCCCTGTAAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CCA 72 bp | CAGCAACCAAACTGCTACAGGTTATTACTCACCATCTaGCTCAAACTGACGGTTCTCGGGGTGCTAGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: QQPNCYRLLLTI*LKLTVLGVLGH Trigger: GTGCCCTAGCACCCCGAGAACCGTCAGTTTGAGCCAGATGGTGAGTAATAACCTGTAGCAGTTTGGTTGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000602573.1 ENST00000665363.1 ENST00000667980.1 |
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| CDS CCA 72 bp | TTCAGCAGCCATGTTTTGCCAGCCTGTTTACCACTCTaGAGAGAGAGGCCACAGAAAACAGCATCCAACTGT | + |
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Preference number: 6 (lower is better) Translates to: FSSHVLPACLPL*RERPQKTASNC Trigger: ACAGTTGGATGCTGTTTTCTGTGGCCTCTCTCTCCAGAGTGGTAAACAGGCTGGCAAAACATGGCTGCTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CAA 90 bp | TGCCTCTCAGGTATGGCAACAGCACTAGGAGCTATGCTGTTAGGGTaGGAGATTATCATACTCTGGTACCAGAGGAGTTTGAGGAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: CLSGMATALGAMLLG*EIIILWYQRSLRKK Trigger: TTTCTTCCTCAAACTCCTCTGGTACCAGAGTATGATAATCTCCAACCCTAACAGCATAGCTCCTAGTGCTGTTGCCATACCTGAGAGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS GCA 72 bp | GTGAAGAACGTTATAAGGGTCGGTTTACAGGGAGAATaGTTTGTGCTGGAAACCTCCATGAACACAAACGCG | + |
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Preference number: 6 (lower is better) Translates to: VKNVIRVGLQGE*FVLETSMNTNA Trigger: CGCGTTTGTGTTCATGGAGGTTTCCAGCACAAAGCATTCTCCCTGTAAACCGACCCTTATAACGTTCTTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CAA 72 bp | GGTATGGCAACAGCACTAGGAGCTATGCTGTTAGGGTaGGAGATTATCATACTCTGGTACCAGAGGAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: GMATALGAMLLG*EIIILWYQRSL Trigger: CAAACTCCTCTGGTACCAGAGTATGATAATCTCCAACCCTAACAGCATAGCTCCTAGTGCTGTTGCCATACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 72 bp | CGTTTCCCCAACTACGATAAGTCCATTGCCGGATGCTaGATAAACTTCGCCCATTACCACTTGGATTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: RFPNYDKSIAGC*INFAHYHLDFL Trigger: CAAGAAATCCAAGTGGTAATGGGCGAAGTTTATTCAGCATCCGGCAATGGACTTATCGTAGTTGGGGAAACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 9 transcripts: ENST00000602414.6 ENST00000602483.5 ENST00000602520.5 ENST00000602573.1 ENST00000602819.6 ENST00000652022.1 ENST00000654083.1 ENST00000665363.1 ENST00000667980.1 |
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| CDS GCA 72 bp | TTGTTACATGCGTGCTTCCCCACTTTAACAGTTAGATaGCGGCACAAAATAGGTAGAGCTGATGAAACCAGG | + |
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Preference number: 6 (lower is better) Translates to: LLHACFPTLTVR*RHKIGRADETR Trigger: CCTGGTTTCATCAGCTCTACCTATTTTGTGCCGGCATCTAACTGTTAAAGTGGGGAAGCACGCATGTAACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CCA 72 bp | GGAGCTATGCTGTTAGGGTTGGAGATTATCATACTCTaGTACCAGAGGAGTTTGAGGAAGAAATTGGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: GAMLLGLEIIIL*YQRSLRKKLEF Trigger: GAACTCCAATTTCTTCCTCAAACTCCTCTGGTACCAGAGTATGATAATCTCCAACCCTAACAGCATAGCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CCA 72 bp | CTAGTCTTCTGTGAAAAAGAGGAAGTAACTAGGAGATaGGTTGTGTCATGCATTCTAGGTCAGAGGTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LVFCEKEEVTRR*VVSCILGQRFS Trigger: TGAGAACCTCTGACCTAGAATGCATGACACAACCCATCTCCTAGTTACTTCCTCTTTTTCACAGAAGACTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CAA 72 bp | ACTTTCTCACAGGCTGCCCTTATAATTAAACTAGTGTaGGGGCAAGCAACATCTGTTTCAAGTAGATCAGGG | + |
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Preference number: 6 (lower is better) Translates to: TFSQAALIIKLV*GQATSVSSRSG Trigger: CCCTGATCTACTTGAAACAGATGTTGCTTGCCCCAACACTAGTTTAATTATAAGGGCAGCCTGTGAGAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CAA 72 bp | AAGTGTGTGGCTGAGATGAGGTGGAGAATACACTCATaGCAGATGAGTAAGTCAGGGAACTACAAAGGAAAA | + |
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Preference number: 6 (lower is better) Translates to: KCVAEMRWRIHS*QMSKSGNYKGK Trigger: TTTTCCTTTGTAGTTCCCTGACTTACTCATCTGCAATGAGTGTATTCTCCACCTCATCTCAGCCACACACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 72 bp | TGGTTATCTGGAATGCCACTAATCAGATGTTTGGTCTaGGTAGGACGAGCCTATTCAAGAACACTACAACAA | + |
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Preference number: 6 (lower is better) Translates to: WLSGMPLIRCLV*VGRAYSRTLQQ Trigger: TTGTTGTAGTGTTCTTGAATAGGCTCGTCCTACTCAGACCAAACATCTGATTAGTGGCATTCCAGATAACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS GCA 72 bp | CTAGCAAACCTAAAAGGCAGCAAGCAGCCTGCAGTTTaGTCAATCCTTAAGAATACATGGTTCATACAACAT | + |
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Preference number: 6 (lower is better) Translates to: LANLKGSKQPAV*SILKNTWFIQH Trigger: ATGTTGTATGAACCATGTATTCTTAAGGATTGAGCAAACTGCAGGCTGCTTGCTGCCTTTTAGGTTTGCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS GCA 72 bp | CTAATACATACAGCAGTTATAACATATGCCAGGCACTaGATTAGGCAGCTTTGCACATCACTGACAATTTGC | + |
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Preference number: 6 (lower is better) Translates to: LIHTAVITYARH*IRQLCTSLTIC Trigger: GCAAATTGTCAGTGATGTGCAAAGCTGCCTAATGCAGTGCCTGGCATATGTTATAACTGCTGTATGTATTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS CAA 90 bp | TTACATTGTAAGTGTGTGGCTGAGATGAGGTGGAGAATACACTCATaGCAGATGAGTAAGTCAGGGAACTACAAAGGAAAAGTTATTGGA | + |
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Preference number: 6 (lower is better) Translates to: LHCKCVAEMRWRIHS*QMSKSGNYKGKVIG Trigger: TCCAATAACTTTTCCTTTGTAGTTCCCTGACTTACTCATCTGCAATGAGTGTATTCTCCACCTCATCTCAGCCACACACTTACAATGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 72 bp | AGGTGGGTTTGGTATCAGAATCATCATACTTTAGTATaGTGGCTGAAAAATGGGCTGAGAACTATCCATCTG | + |
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Preference number: 6 (lower is better) Translates to: RWVWYQNHHTLV*WLKNGLRTIHL Trigger: CAGATGGATAGTTCTCAGCCCATTTTTCAGCCATCATACTAAAGTATGATGATTCTGATACCAAACCCACCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 72 bp | AAATCATCTTTATTGCACTGTTTAGTTTTTGAGCGCTaGCAGTTAATCATATATACGAGATGGTCAGAGCCC | + |
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Preference number: 6 (lower is better) Translates to: KSSLLHCLVFER*QLIIYTRWSEP Trigger: GGGCTCTGACCATCTCGTATATATGATTAACTGTCAGCGCTCAAAAACTAAACAGTGCAATAAAGATGATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 72 bp | TCAAGGACATCTGCCTGTCACAATATATTCTCAAAGTaGTCTGATATTTGGAAACAAGTATCCTTGTTGAGT | + |
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Preference number: 6 (lower is better) Translates to: SRTSACHNIFSK*SDIWKQVSLLS Trigger: ACTCAACAAGGATACTTGTTTCCAAATATCAGATCACTTTGAGAATATATTGTGACAGGCAGATGTCCTTGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 72 bp | CAAGAAATCTTCATATTCTCTGTAGCCTTTGTCAAGTaGGGAAATCAGTGGTTAAAGAATTCCACTATAAAC | + |
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Preference number: 6 (lower is better) Translates to: QEIFIFSVAFVK*GNQWLKNSTIN Trigger: GTTTATAGTGGAATTCTTTAACCACTGATTTCCTCACTTGACAAAGGCTACAGAGAATATGAAGATTTCTTG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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| CDS TCA 72 bp | ATAAGCCAAATCATCTTTATTGCACTGTTTAGTTTTTaGGCGCTGACAGTTAATCATATATACGAGATGGTC | + |
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Preference number: 6 (lower is better) Translates to: ISQIIFIALFSF*ALTVNHIYEMV Trigger: GACCATCTCGTATATATGATTAACTGTCAGCGCTCAAAAACTAAACAGTGCAATAAAGATGATTTGGCTTAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654083.1 |
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