Pregenerated sensors for SNHG4 (Homo sapiens)
Ensembl gene IDs: ENSG00000281398Ensembl transcript IDs: ENST00000505522.6, ENST00000506188.5, ENST00000507197.5, ENST00000507692.5, ENST00000513259.5, ENST00000648842.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ATCTGCCACAGCCAGCCTCTCTTCCAAAGTCCCTGCCTCTGGCCCTaGGAGATCGAGGCTCTCGGAGTCAGGCTCTATGGGACTCCGCGC | + |
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Preference number: 5 (lower is better) Translates to: ICHSQPLFQSPCLWP*EIEALGVRLYGTPR Trigger: GCGCGGAGTCCCATAGAGCCTGACTCCGAGAGCCTCGATCTCCCAGGGCCAGAGGCAGGGACTTTGGAAGAGAGGCTGGCTGTGGCAGAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507692.5 |
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| CDS CCA 90 bp | ATCTGCCACAGCCAGCCTCTCTTCCAAAGTCCCTGCCTCTGGCCCTaGGAGATCGAGGCTCTCGGAGTCAGGCTCTATGGGACTCCTCAC | + |
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Preference number: 5 (lower is better) Translates to: ICHSQPLFQSPCLWP*EIEALGVRLYGTPH Trigger: GTGAGGAGTCCCATAGAGCCTGACTCCGAGAGCCTCGATCTCCCAGGGCCAGAGGCAGGGACTTTGGAAGAGAGGCTGGCTGTGGCAGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513259.5 |
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| CDS GCA 90 bp | TTGTTTTATGCAACATTCAGGGAGGTCCTGCCATGTGCCAAGCACTaGGATTGGGATCTGAAAACTGCACATGCAGACTGTCACCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: LFYATFREVLPCAKH*DWDLKTAHADCHLP Trigger: TGGCAGGTGACAGTCTGCATGTGCAGTTTTCAGATCCCAATCGCAGTGCTTGGCACATGGCAGGACCTCCCTGAATGTTGCATAAAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000506188.5 |
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| CDS TCA 90 bp | TTGCCTTATGTCCAACCCATCACTTGCTGGGGTAGTCAGCCTAGTTaGACAGGTTTAGACAACCCTAGAGTTCTCTCCAGGAGAATTAAT | + |
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Preference number: 5 (lower is better) Translates to: LPYVQPITCWGSQPS*TGLDNPRVLSRRIN Trigger: ATTAATTCTCCTGGAGAGAACTCTAGGGTTGTCTAAACCTGTTCAACTAGGCTGACTACCCCAGCAAGTGATGGGTTGGACATAAGGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505522.6 |
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| CDS TCA 90 bp | GGGAGTACACAAATCAGAAGGAGGTCAAGTGTCTGGGAAATTAAATaGCGGCACCTGGAAGAACAGATCATTGTTGGGGTAAGAAATGGA | + |
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Preference number: 5 (lower is better) Translates to: GSTQIRRRSSVWEIK*RHLEEQIIVGVRNG Trigger: TCCATTTCTTACCCCAACAATGATCTGTTCTTCCAGGTGCCGTCATTTAATTTCCCAGACACTTGACCTCCTTCTGATTTGTGTACTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505522.6 |
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| CDS GCA 90 bp | ATCTTCAACGGGATCCTGGCTCTTTACAGCAAGTTTGCTGATCCCTaGTCTAGAACAGCAGTGCATAATAAACTTTCTGAATTGGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: IFNGILALYSKFADP*SRTAVHNKLSELVE Trigger: TTCCACCAATTCAGAAAGTTTATTATGCACTGCTGTTCTAGAGCAGGGATCAGCAAACTTGCTGTAAAGAGCCAGGATCCCGTTGAAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000506188.5 ENST00000507197.5 |
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| CDS GCA 90 bp | TACCAACTCAGACTGAGATTGTGGCTGAGTTTGATAAGTGCAGACTaGTATTCTTTCTTAAGACCTCTCCCTTTGGAGCACATTAAAAGT | + |
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Preference number: 5 (lower is better) Translates to: YQLRLRLWLSLISAD*YSFLRPLPLEHIKS Trigger: ACTTTTAATGTGCTCCAAAGGGAGAGGTCTTAAGAAAGAATAGCAGTCTGCACTTATCAAACTCAGCCACAATCTCAGTCTGAGTTGGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648842.1 |
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| CDS CCA 90 bp | CTGATCCCTGCTCTAGAACAGCAGTGCATAATAAACTTTCTGAATTaGTGGAAATGTTCTCTAATATTGGAGTTGTCCAATAGGGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: LIPALEQQCIINFLN*WKCSLILELSNRVV Trigger: GACTACCCTATTGGACAACTCCAATATTAGAGAACATTTCCACCAATTCAGAAAGTTTATTATGCACTGCTGTTCTAGAGCAGGGATCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000506188.5 ENST00000507197.5 ENST00000513259.5 ENST00000648842.1 |
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| CDS CCA 90 bp | GGCTGTGTTTGCACTAGAGCTGCAAAAATAGTTGCAAAAACCACATaGCTGAACAAGCATAATATTATATTACCTGGCTCTTTACAGCAA | + |
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Preference number: 5 (lower is better) Translates to: GCVCTRAAKIVAKTT*LNKHNIILPGSLQQ Trigger: TTGCTGTAAAGAGCCAGGTAATATAATATTATGCTTGTTCAGCCATGTGGTTTTTGCAACTATTTTTGCAGCTCTAGTGCAAACACAGCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000648842.1 |
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| CDS GCA 90 bp | ATAATATTATATTACCTGGCTCTTTACAGCAAGTTTGCTGATCCCTaGTCTAGAACAGCAGTGCATAATAAACTTTCTGAATTGGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: IILYYLALYSKFADP*SRTAVHNKLSELVE Trigger: TTCCACCAATTCAGAAAGTTTATTATGCACTGCTGTTCTAGAGCAGGGATCAGCAAACTTGCTGTAAAGAGCCAGGTAATATAATATTAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648842.1 |
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| CDS CCA 72 bp | TGCCACAGCCAGCCTCTCTTCCAAAGTCCCTGCCTCTaGCCCTGGGAGATCGAGGCTCTCGGAGTCAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: CHSQPLFQSPCL*PWEIEALGVRL Trigger: GAGCCTGACTCCGAGAGCCTCGATCTCCCAGGGCCAGAGGCAGGGACTTTGGAAGAGAGGCTGGCTGTGGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507692.5 ENST00000513259.5 |
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| CDS CCA 72 bp | AGCCAGCCTCTCTTCCAAAGTCCCTGCCTCTGGCCCTaGGAGATCGAGGCTCTCGGAGTCAGGCTCTATGGG | + |
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Preference number: 6 (lower is better) Translates to: SQPLFQSPCLWP*EIEALGVRLYG Trigger: CCCATAGAGCCTGACTCCGAGAGCCTCGATCTCCCAGGGCCAGAGGCAGGGACTTTGGAAGAGAGGCTGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507692.5 ENST00000513259.5 |
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| CDS CCA 72 bp | AGGATAGAATGCCATGGGGTTAGAGGTAGCAGAGGCTaGGACAGAACTTGTCTGTTCTGCCCCCTTTCACCC | + |
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Preference number: 6 (lower is better) Translates to: RIECHGVRGSRG*DRTCLFCPLSP Trigger: GGGTGAAAGGGGGCAGAACAGACAAGTTCTGTCCCAGCCTCTGCTACCTCTAACCCCATGGCATTCTATCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000505522.6 |
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| CDS TCA 72 bp | GTCCAACCCATCACTTGCTGGGGTAGTCAGCCTAGTTaGACAGGTTTAGACAACCCTAGAGTTCTCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: VQPITCWGSQPS*TGLDNPRVLSR Trigger: CCTGGAGAGAACTCTAGGGTTGTCTAAACCTGTTCAACTAGGCTGACTACCCCAGCAAGTGATGGGTTGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505522.6 |
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| CDS CAA 90 bp | TGTCACTCTGGTGAAGCACAGATTCTAACTCAGAGGCTCTTTGCCTaGAGGGGCATCTTCCCTCTCCTTCAACTCATCAGAACCCTTAGT | + |
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Preference number: 6 (lower is better) Translates to: CHSGEAQILTQRLFA*RGIFPLLQLIRTLS Trigger: ACTAAGGGTTCTGATGAGTTGAAGGAGAGGGAAGATGCCCCTCAAGGCAAAGAGCCTCTGAGTTAGAATCTGTGCTTCACCAGAGTGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505522.6 |
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| CDS CCA 72 bp | GAAGCTGTCATGGCCAACAGGAGCCTAAGTGTAATGTaGTATCTTCAACGGGATCCTGGCTCTTTACAGCAA | + |
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Preference number: 6 (lower is better) Translates to: EAVMANRSLSVM*YLQRDPGSLQQ Trigger: TTGCTGTAAAGAGCCAGGATCCCGTTGAAGATACCACATTACACTTAGGCTCCTGTTGGCCATGACAGCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000506188.5 ENST00000507197.5 |
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| CDS CCA 72 bp | GAAGCTGTCATGGCCAACAGGAGCCTAAGTGTAATGTaGTATCTTCAACGGGATCGTTACTTATCTTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: EAVMANRSLSVM*YLQRDRYLSWC Trigger: ACACCAAGATAAGTAACGATCCCGTTGAAGATACCACATTACACTTAGGCTCCTGTTGGCCATGACAGCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505522.6 |
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| CDS CAA 72 bp | GTATCTTCAACGGGATCCTGGCTCTTTACAGCAAGTTaGCTGATCCCTGCTCTAGAACAGCAGTGCATAATA | + |
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Preference number: 6 (lower is better) Translates to: VSSTGSWLFTAS*LIPALEQQCII Trigger: TATTATGCACTGCTGTTCTAGAGCAGGGATCAGCAAACTTGCTGTAAAGAGCCAGGATCCCGTTGAAGATAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000506188.5 ENST00000507197.5 |
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| CDS GCA 72 bp | GGGATCCTGGCTCTTTACAGCAAGTTTGCTGATCCCTaGTCTAGAACAGCAGTGCATAATAAACTTTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: GILALYSKFADP*SRTAVHNKLSE Trigger: TTCAGAAAGTTTATTATGCACTGCTGTTCTAGAGCAGGGATCAGCAAACTTGCTGTAAAGAGCCAGGATCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000506188.5 ENST00000507197.5 |
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| CDS CAA 90 bp | TGTAATGTGGTATCTTCAACGGGATCCTGGCTCTTTACAGCAAGTTaGCTGATCCCTGCTCTAGAACAGCAGTGCATAATAAACTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: CNVVSSTGSWLFTAS*LIPALEQQCIINFL Trigger: CAGAAAGTTTATTATGCACTGCTGTTCTAGAGCAGGGATCAGCAAACTTGCTGTAAAGAGCCAGGATCCCGTTGAAGATACCACATTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000506188.5 ENST00000507197.5 |
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| CDS CCA 72 bp | CTTTGGAAGCTGGTGAATACATTTCAAGACACAACATaGCACCTGTGTCTAGCTCTATGGTACAACATGGTA | + |
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Preference number: 6 (lower is better) Translates to: LWKLVNTFQDTT*HLCLALWYNMV Trigger: TACCATGTTGTACCATAGAGCTAGACACAGGTGCCATGTTGTGTCTTGAAATGTATTCACCAGCTTCCAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505522.6 |
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| CDS CCA 72 bp | GAGCCATTTCGGTTTTACCAACTCAGACTGAGATTGTaGCTGAGTTTGATAAGTGCAGACTGCTATTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: EPFRFYQLRLRL*LSLISADCYSF Trigger: GAAAGAATAGCAGTCTGCACTTATCAAACTCAGCCACAATCTCAGTCTGAGTTGGTAAAACCGAAATGGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648842.1 |
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| CDS CAA 72 bp | CGGTTTTACCAACTCAGACTGAGATTGTGGCTGAGTTaGATAAGTGCAGACTGCTATTCTTTCTTAAGACCT | + |
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Preference number: 6 (lower is better) Translates to: RFYQLRLRLWLS*ISADCYSFLRP Trigger: AGGTCTTAAGAAAGAATAGCAGTCTGCACTTATCAAACTCAGCCACAATCTCAGTCTGAGTTGGTAAAACCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648842.1 |
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| CDS GCA 72 bp | TATTACCTGGCTCTTTACAGCAAGTTTGCTGATCCCTaGTCTAGAACAGCAGTGCATAATAAACTTTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: YYLALYSKFADP*SRTAVHNKLSE Trigger: TTCAGAAAGTTTATTATGCACTGCTGTTCTAGAGCAGGGATCAGCAAACTTGCTGTAAAGAGCCAGGTAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648842.1 |
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| CDS CAA 72 bp | TTTCTGAATTGGTGGAAATGTTCTCTAATATTGGAGTaGTCCAATAGGGTAGTCAGCAGCCAGATTGTTACT | + |
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Preference number: 6 (lower is better) Translates to: FLNWWKCSLILE*SNRVVSSQIVT Trigger: AGTAACAATCTGGCTGCTGACTACCCTATTGGACAACTCCAATATTAGAGAACATTTCCACCAATTCAGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000506188.5 ENST00000507197.5 ENST00000513259.5 ENST00000648842.1 |
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| CDS CAA 72 bp | ATAAACTTTCTGAATTGGTGGAAATGTTCTCTAATATaGGAGTTGTCCAATAGGGTAGTCAGCAGCCAGATT | + |
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Preference number: 6 (lower is better) Translates to: INFLNWWKCSLI*ELSNRVVSSQI Trigger: AATCTGGCTGCTGACTACCCTATTGGACAACTCCAATATTAGAGAACATTTCCACCAATTCAGAAAGTTTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000506188.5 ENST00000507197.5 ENST00000513259.5 ENST00000648842.1 |
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