Pregenerated sensors for SNHG31 (Homo sapiens)

Ensembl gene IDs: ENSG00000229267

Ensembl transcript IDs: ENST00000420134.1, ENST00000607412.1, ENST00000655899.1, ENST00000664818.1, ENST00000670391.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	AACAGGAAGCATAACTGGGAGGCCTCAGGAAACTTATaGTCATGGAGGAAGGCGAAGGAAAAGCAAGGCACA	+
Preference number: 6 (lower is better) Translates to: NRKHNWEASGNL*SWRKAKEKQGT Trigger: TGTGCCTTGCTTTTCCTTCGCCTTCCTCCATGATCATAAGTTTCCTGAGGCCTCCCAGTTATGCTTCCTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670391.1
CDS CAA 72 bp	TCCCCAATTGCTTTGGCATTTTCCAATCTCGCTACTTaGGACATCATGCTGGATGCTGTAGAACCTACAGAG	+
Preference number: 6 (lower is better) Translates to: SPIALAFSNLAT*DIMLDAVEPTE Trigger: CTCTGTAGGTTCTACAGCATCCAGCATGATGTCCAAAGTAGCGAGATTGGAAAATGCCAAAGCAATTGGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000420134.1 ENST00000655899.1
CDS CAA 72 bp	TGCATAGAGGTGTTCATAGTATTCTCTGATGGTTGTTaGTATTTCTATGGGGTCAGCGGTACTATCCCCCTT	+
Preference number: 6 (lower is better) Translates to: CIEVFIVFSDGC*YFYGVSGTIPL Trigger: AAGGGGGATAGTACCGCTGACCCCATAGAAATACAAACAACCATCAGAGAATACTATGAACACCTCTATGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000655899.1 ENST00000664818.1 ENST00000670391.1
CDS CAA 72 bp	TTTTATACTAAGAAGTTCTATACCTGGGCAAAAGCATaGCCATTCATTGAGCACTGCCCATATGACATGCTT	+
Preference number: 6 (lower is better) Translates to: FYTKKFYTWAKA*PFIEHCPYDML Trigger: AAGCATGTCATATGGGCAGTGCTCAATGAATGGCAATGCTTTTGCCCAGGTATAGAACTTCTTAGTATAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000607412.1 ENST00000655899.1 ENST00000664818.1 ENST00000670391.1
CDS CAA 72 bp	TTTTGTGTCTCTATCTCCTTCAGTTCAGCTCTGATCTaGGTTATTTCTTATCTTCTGCTAGCTTTGGGGTTT	+
Preference number: 6 (lower is better) Translates to: FCVSISFSSALI*VISYLLLALGF Trigger: AAACCCCAAAGCTAGCAGAAGATAAGAAATAACCAAGATCAGAGCTGAACTGAAGGAGATAGAGACACAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000607412.1 ENST00000655899.1 ENST00000664818.1 ENST00000670391.1
CDS TCA 72 bp	TATTATATTATTTCTCTAAGGCCTAGAAGTGGGATTTaGATCCAGGACTGTCTGACTCCTGCCTGTTTATTT	+
Preference number: 6 (lower is better) Translates to: YYIISLRPRSGI*IQDCLTPACLF Trigger: AAATAAACAGGCAGGAGTCAGACAGTCCTGGATTCAAATCCCACTTCTAGGCCTTAGAGAAATAATATAATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000607412.1 ENST00000655899.1 ENST00000664818.1 ENST00000670391.1
CDS TCA 72 bp	TCTGTAGATATCTATCAGGTCTACTTGATCCAGAGCTaGATTCCGGTCCTGAATATCTTTGTTAATTTTCTG	+
Preference number: 6 (lower is better) Translates to: SVDIYQVYLIQS*IPVLNIFVNFL Trigger: CAGAAAATTAACAAAGATATTCAGGACCGGAATTCAGCTCTGGATCAAGTAGACCTGATAGATATCTACAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000607412.1 ENST00000655899.1 ENST00000664818.1 ENST00000670391.1
CDS CAA 72 bp	TGGTCTGAGAGACTGTTTGTTATGATTTCAGTTCTTTaGCATTTACTGAGGAGTGTTTTACTTCCGATTATG	+
Preference number: 6 (lower is better) Translates to: WSERLFVMISVL*HLLRSVLLPIM Trigger: CATAATCGGAAGTAAAACACTCCTCAGTAAATGCAAAAGAACTGAAATCATAACAAACAGTCTCTCAGACCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000607412.1 ENST00000655899.1 ENST00000664818.1 ENST00000670391.1

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